| mature miRNA: GGGCCCATATATCAGTGGCAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29623955|gb|CB628966.1|CB628966 OSIIEb04N14.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb04N14 3', mRNA sequence GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): AGGGGTAAACCCCAGAAAACCATGACGACCAGTGGCGGGAAGCTATCCTTGGGAACACAATGGATGGTGGACAGAACCGTCGCTGTTTAATGAACAATGGAATTAAAACTTGATCAGTTTATGCTAGGTCTTAGGTTTGTGAAATGATATTTAAAAACTCAGCTTTACGCAAAGTAACCATAGCCACCCCTTGTATTATCCTGTACATTATAGCATTTTCTGTGGTGGCTTGCTGAGTACTTTTGTACTCATTGTTGCTCTATATATATATCTTTTAGCAGAGTATTGAAGAGAAGCCCTTGTTAGTACGCTTGCGTACCTAACAAGATAATCGGAGTGCGGTTCCGTTCTAGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAACCGAGCCCTTGTATTATTTTGTCTTCCGCTATTGTTTCTCTGATAGTTGTTGGCCTGCTTGGCCCTAATATAAACATTTAACTCTCTTAGCCTGAATTCATTCGTGATATGTTGTGATTCGGTTATATATGTGTGTACCAACTACTGATCCAGGGATTGGTACTGATAAACACAGAAGATTTCCGATTTACAAAATCGGAGGTCGACAGGCGGCGTCCATGCCGTTGTGTTGCTCCGCTGCTAGCAGCTAGCCGCACGTCCCCATGGCCTCCCTCCCGTGTAGTTTCGCGTGTGGGGAGAGGGAGATGACATGTGGGGCCTACGTGGGCCCCACCTTATTTTTTTTGTGTAGCAGATATGTGGGCCCCAGGATTTTTAGATTAATTATTTTTTGTGTGGCTAAAATAAAAAG | |||||||||
gi|88519561|gb|CI447215.1|CI447215 CI447215 Oryza sativa (japonica cultivar-group) 4th leaf leaf 3mM SA(salicylic acid) for 1 da GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): GTTAACAAGCATACAAATTCTCATAAGCACATCATCATATATCAATCATCAGGCCTCAAAACCTACAGGTAACATGATATATCAAAATGTTTTTTGCATACCAGATTGCCTCTGATCTGCTGATGAAATTGCGTTACCTACGGGCTGCTAATGCAGAGAGCTTACCTCCTAAAAACCTACAGGGTTCTACTGATATATGGGTTACATTTCATGCCTTCTCAAAAAGAATAACTACATTTGCTTTGCTAACATACGGCGTTACAACTGCTGGACCTTCATCACAGATACAATGAGTTGGCGAACATGATACCCCGACGTAAGCTGTCGCTGGCCGCTCCGAACTTGTTCTCAAGGTTAACCTCACCAACAGCTTGAGCAGCAGCTTTCAACTGATTCAGAAATTCATCCAGTCTTCTAGCCAGCCGTATGATAATTCCTTCA | |||||||||
gi|88966266|gb|CI119401.1|CI119401 CI119401 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): ATCAATCTTCAGGCCTCAAACTACAGGTAACATGATATATCAAAATGTTTTTTGCATACCAGATTGCCTCTGATCTGCTGATGAAATTGCGTTACCTACGGGCTGCTAATGCAGAGAGCTTACCTCCTAAAAACCTACAGGGTTCTACTGATATATGGGTTACATTTCATGCCTTCCCAAAAAGAATAACTACATTTGCTTTGCTAACATACGGCGTTACAACTGCTGGACCTTCATCACAGATACAATGAGTTGGCGAACATGATACCCCGACGTAAGCTGTCGCTGGCCGCTCCGAACTTGTTCTCAAGGTTAACCTCACCAACAGCTTGAGCAGCAGCTTTCAACTGATTCAGAAAATCATCCAGTCTTCTAGCCAGCCGTATGATACTTCCTTCAAAAATGTCAGTCATTTCTATCACCTCTCCAAAAGTGGCCCCCTTTGACCAACAGTATATGACATCCATCAGGTAGGGCCTACAAGTTGATTCGACATATTCTTCAACATTTACCTCTAATTTGCATTCTTTTTGTACCTCAGCTATTTTTCTCGCAGCCTCCTGTAGCTGCATCATTGGTGTAGAAAGCTCACTTCTCAGG | |||||||||
gi|29614266|gb|CB619279.1|CB619279 OSIIEa03L14.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa03L14 3', mRNA sequence GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): CGACACGACGGCCACCGCGCTGCAGTGGATCATGGCCGAGCTGGTCAAGAACCCATCCATCCAATCCAAGCTCCACGACGAGATCAAGTCCAAGACCAGCGACGACGAGATCACCGAGGAGGACACCCACGACATGCCGTACCTGAAGGCCGTCATCCTCGAGGGCCTCCGCAAGCACCCGCCGACCCACTTCGTGCTGCCGCACAAGGCGGCGGAGGACGTCGAGGTCGGCGGGTACCTCATCCCCAAGGGCGCGACGGTGAACTTCATGGTGGCCGAGATGGGAAGGGACGAGAGGGAGTGGGAGAAGCCGATGGAGTTCATCCCGGAGCGGTTCCTCGCCGGCGGCGACGGCGAGGGAGTGGACGTGACGGGCAGCCGGGAGGTCCGGATGATGCCGTTCGGCATCGGGAGGAGGATATGTGCAGGGCTCGGCGTTGCCATGCTACACCTGGAGTATTTCGTGGCGAATTTGGTGAAGGAGTTCGAGTGGAAGGAGGTGGCCGGCGACGAGGTGGACTTGACCGAGAAGAATGAGTTCACCACTGTGATGGCAAAGCCGCTCCGAGCTCAACTTGTTAAACGGGCTTAGTTTTTATTTTTTTGAGTGTCTATAATACGGAACGAGATCTCTCTGCTTCGTAACGTGGTCACTGATAGATGGGCCCGCGAGCGGTGGAGCTCACATAT | |||||||||
gi|88959637|gb|CI002247.1|CI002247 CI002247 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): CTTTTTTCGATGATGTGCGACCAACCATGTATACTATTCTCAAAGTTTAACCACTCTCACCACCACTCATTATTCCATCCAATCTTCCATCCATCCATCCAAGGCAAGCTCAGCAAATCAATCAAAAAAACAAATAAAAAGAGAAAACAAAATGGTGTATATGAAGAAGTCTAGCAACCGGCGAGGCGGGCGCACACCCTGCGCTGGATGGGGGTCCGGCACGATGGGCACTCCTTCATCCCTTGCTTGTCATGGAGGTCATTGCATTTCGCGCAGACCACCTGGTGCGCGCAAGGGAGGAAGACGACCGACATCTCCTCGCTCAGGCACATGACGCACCCCCGGTCACGCTGTATGTCGTCAAAATCGAAATCCTGGGGTACCGCTGCTATATGGGCCAAAATTTGAGCGCTGCCATTCTTTCTCCCTTCAGAAAGGCG | |||||||||
gi|117243235|gb|CT850358.1|CT850358 CT850358 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): GAATCGTCCAGAACAAACTCGAGGGAAAGGATGCTCTGACTTAACTGCTGTGTAGTTGAGTCACTGATATGTGGGCCATAGTAAAATGGGGCCCACATATCAGTGACTGACTCAAGTGCAGTTAATTCTCTGCTTCCAAACTCGAGATATCCAGCAACTTCCAGTCCAAAATTGGAGTGCTTGATCCGATTTTTTTCCTTGAAGACAATGGGAAGGAAATGACCACCGGGCTGGGCTTCTCCTAGTCAGTGGCCCATAGACACAGTGTGTACTCAGCCCATGGTACAAGCTTACACAAATGGGCTCCGGCCCATCGTGAAAATGGCCCACGCCTACCCAAACGCACGCACCGGGTCCGAGGACTCTCGACCTCTTCTTCTCGAGCCTCCCCTTCCTCGAGTTGGGGCGATGGTCACGGCCTAACGATCCCCGGCAGTGGGAGGCGACCAAGCCCACAAACAAAAGGCAGAAGGGGCCCGGGAGGAGAAAAGACCCCAAAAAAAGGGGGGAAACGCGGGGAAAAAAAAAAAAAAAACCCGGGAACCCCCCCCCCCCCTCCCCCACACCTTCCCCATTGTGGGGGGAGGGATAACCTGGGAAAAACACCTCCGTGGTCCCCACAAAAATAAAAAGGAGGCCCTTAATAACCGGGGGTTCCCCCTCCCCAAGGCCCCCCCACCCCCGGGGTTCTCTTTCTTTCTAACCACACCAAGAGCGGCGGGGGGGGGCCCCGCCGCTGTATACACACAAAAGGGGGGGCGGCCCCCAAATTACTCCACAGCGGGGCCGGGAGGGACCCCCGCCGGGGGGGATACCCCCCCCACCCAAACAAAAAGAGGGGGTGGTGCGCCCCTCTCCTCCGCGGCCCCGGGGACAGACCCCCCCGAGGGGAGGGCCCCCCCCTCATACTCCTTTGGGAGAGAGCACAAAAAAAAAAAAACTTTTTCTTCTCCCCCTGTGGGCGCCCCCCAATGAGGGGGTGGTGGTTAGCATAAAACAAAAAGATATCATCTGAAGTCCTCGTTGGGTAAGGGCTTCTCACCACCCCCACCCCTCCCTGCCCGCCGCACCCCCTACATTACTACCTGTAGGGAACGGACGGAAGCACTAGT | |||||||||
gi|29670023|gb|CB666298.1|CB666298 OSJNEd13C09.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd13C09 3', mRNA sequence GGGCCCATATATCAGTGGCAC EST sequence (targeted fragment marked with yellow): ATGTTGCATGATGATTTTGTACTGGTGGATCAACTTCTCAAGAGGCGAGAAGGGGTAAACCCCAGAAAACCATGACGACCAGTGGCGGGAAGCTATCCTTGGGAACACAATGGATGGTGGACAGAACCGTCGCTGTTTAATGAACAATGGAATTAAAACTTGATCAGTTTATGCTAGGTCTTAGGTTTGTGAAATGATATTTAAAAACTCAGCTTTACGCAAAGTAACCATAGCCACCCCTTGTATTATCCTGTACATTATAGCATTTTCTGTGGTGGCTTGCTGAGTACTTTTGTACTCATTGTTGCTCTATATATATATCTTTTAGCAGAGTATTGAAGAGAAGCCCTTGTTAGTACGCTTGCGTACCTAACAAGATAATCGGAGTGCGGTTCCGTTCTAGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAACCGAGCCCTTGTATTATTTTGTCTTCCGCTATTGTTTCTCTGATAGTTGTTGGCCTGCTTGGCCCTAATATAAACATTTAACTCTCTTAGCCTGAATTCATTCGTGATATGTTGTGATTCGGTTATATATGTGTGTACCAACTACTGATCCAGGGATTGGTACTGATAAACACAGAAGATTTCCGATTTACAAAATCGGAGGTCGACAGGCGGCGTCCATGCCGTTGTGTTGCTCCGCTGCTAGCAGCTAGCCGCACGTCCCCATGGCCTCCCTCCCGTGTAGTTTCGCGTGTGGGGAGAGGGAGATGACATGTGGGGCCTACGTGGGCCCCACCTTATTTTTTTTTGTGTAGCAGATATGTGGGCCCCACCATTTTTAGATTAATTATTTTTTGTGTGGCT | |||||||||