| mature miRNA: GTCTTGCCCAAGTCGCTGCCG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88433233|gb|CI591673.1|CI591673 CI591673 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): TTTGGGAGATTTGCAGAGGCATACACACCTCTGTTCTCCCTCCTTTTGCTTCGTTCCCATACCAATTAATCAACCACTTTCACCTCCACATGGCCTAAGAAGCCATAATCTTCTATTGACGTCTGCATTTGCACGGCGGTCGCCAGCGATTTGGGCACGACGGGCATGGCGTCCCGCCGGCATGTCCTGATTGCTGCACTTATTATGGTTGGGGTTCTCGAATTCGCCAACGCAGACAAATACAAGCCAACTGAGTCCATACTTGTGAACTTGTGGTTCAGACAAGGAGGGCCAGGACATCGACGGCAGAAAATGGCTTTCTGATAAGGACAGTAAGTGGCTCATCGACGGCGAGAAGTCATCTATCATGGCAAATGCAGATTTCCAAGATCCCTCCCTCCCATCGCTGG | |||||||||
gi|86504798|gb|CI147431.1|CI147431 CI147431 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): ATGACAGCAGCGAACTCGCTAACCATTAGCACTAGAGAACACATCGGTATCGTTTTCTTAAAATATGAAAAAAAAAAAAGAGGAAAAGATAACATGGTGATATTTAGCCTCCGGCACCATGGGGATCCACACCGTTAGATAACTTATTCTTCGAACGAGCAGGGCCCCCATTTCAGAGGTGAGATATAAAATGGCCCTGAGCGACGATGATGATACCACTCAAAATAATGGACACAGGTAGGACGTATCGATTGGCCAAGTTTTTCGTATCAGCACCGGACAAGGTACCATTATCTCGCGTCTCAGCACGGAATTGCCGAAGCAGCCTCAGTATGGCTTTGTTCTCCTCGGCACTTTTTTCACACGAGCCATTGTGAAGATCCATCTGAAGTAGCAGACGGAACAGCTCGTCTTTCTTCTCCTGCACTAGCGTCTCAAGACTTGCAGGATCTATGTTGTTATGAACCTTGGCATCTGCGGCAGGATTTGGGCAAGGCAAACGATGCTGAAAATACAAAGAACACCGTGAATTGCATTATGAAAAGGAAACCAAATAGTAACACAAAACGCATGAGGAAACAAGTACAGTGGTAAAACTGG | |||||||||
gi|87015525|gb|CI303131.1|CI303131 CI303131 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): GATGCGCGCGTGCAGGGAGGGATGGGATCAGGGGAATGGGATTGGGGGTTTGGGGCGGGATGGATCAGTTGAATCGGCTGCGCTAGTTTGGAACTCGAACAGCTTGCAGTAGGATAGGTGGGTTGAATGGTCGCAGGTGTTGCGCTTTTCTGATGCGGTTTCGTTTGCTGCTGCTGCTGTGTGAAGGTAGCCGGTTGTTGCTTGCACGCGTGGATCACTTACAGAACCATGCGGCGGTAGGAACTTGGGCAAGATTCCAGATGGTTCGCTTGTTTGCTTTCTTATGAGGATTAATAATGGGAGAATGAAGATGAGGAACAAACAACGGAAATCATCTGCTC | |||||||||
gi|88992964|gb|CI035926.1|CI035926 CI035926 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): TTTTTGGGTATGACAGCAAGCGAACTCGCTAACCATTAGCACTAGAGAACACATCGGTATCGTTTTCTTAAAATATGAAAAAAAAAAGAGGAAAAGATAACATGGTGATATTTAGCCTCCGCACCATGGGGATCCACACCGTTAGATAACTTATTCTTCGAACGAGCAGGGCCCCCATTTCAGAGGTGAGATATAAAATGGCCCTGAGCGACGATGATGATACCACTCAAAATAATGGACACAGGTAGGACGTATCGATTGGCCAAGTTTTTCGTATCAGCACCGGACAAGGTACCATTATCTCGCGTCTCAGCACGGAATTGCCGAAGCAGCCTCAGTATGGCTTTGTTCTCCTCGGCACTTTTTTCACACGAGCCATTGTGAAGATCCATCTGAAGTAGCAGACGGAACAGCTCGTCTTTCTTCTCCTGCACTAGCGTCTCAAGACTTGCAGGATCTATGTTGTTATGAACCTTGGCATCTGCGGCAGGATTTGGGCAAGGCAAACGATGCTTTTCTTTATATACGAATCCAGTAGGCCAACAGTGCTCGAGG | |||||||||
gi|66921754|gb|CX108602.1|CX108602 BI149P01 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): TGGTACCGAGGTACGGTCGGAATCCCGGGTCGACCACGCGTCCGACCCATGCTCGTCACGTATTAACTACTTCTAACTGTTATACTGCAAATGGCTCATTAAATCAGTTATAGTTAGTTTTGATGGTACGTGCTACTCGGATAACCGTGATAATACTATAGCTAATACGTGCAACAAAGCCCGACTTCCGGGAGGGGCGCATTTATTATATTAAGGGCTGACGCGTGCTCTGCCCGCTGATCCGATGATTCATGATAACTCGATAGATCGTACTGCCCTCGTGCCGGCGACGCATCATTCCAATATCTGCCCTATCAACTTTCGATGGTACGATAGGGGCCTACCGTGGTGGTGACGGGTGACTGAGAACTAGGGTTCGATTCCTGGAGAGGGCAGCCTGATAAGTCGGGTATCACATCCAGAGAAGGCATTGATGTGCTCTAATTACCCAATCCTGACCCGGCGAGGTAGTAGACAATGAATTACCTTACCGGGCGCTTCCGTGTCTGTTCATTGCAATGAGTACACTCTGAATCCGCTTAGCGAGGATCCATCGGAGGGCAAGTCTGGTTGCCGAATCCGCGGTAATTCAGGTACATAGCGTTATATATGGTTGTTGGCGTCAATGAACCGTGGTTGGGAACCTGGGCCGGGGCCGGCGTCGCCTTGGGGAAGACAATAAAGAACTTTTGCGGAAGGGCCCCCGGGTAATGGGGGGGGGACCCCGGGCGATTGGAAATTATTTCAAGAGGCTGCCGAATTGCGGAGCTCAGATCGCATGTGGGGCGAAAAAAAGAGGGGACAACTCAGGACTGGTGACGAAGACTCGATTCCAAGGCCCCCTCCCCCCCCCCCCTCCCCTCCCCTCCCCCCCGNGNGCCGAAAAAGAGAAAGAAAAACAGAAAGAAAACGAAGAGAGAACAAAAAGAAAAAAGGAAAGAAAAAGGAAAGG | |||||||||
gi|117228892|gb|CT853595.1|CT853595 CT853595 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): GTACTTCGGCCGCACCTCACCTGCCAATCCTTGTACGACAGCGCCCTCCCAACCATCTGCTCTCTCTAAGCTCTAGCTCTACCTTTCTTCCTCCTCGATCCATCCATCATCGATCATTCTTCTTCTTCTTCACCTAGCTAGCTTGCTCCCGCCGGACGGTTCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCTCTCCGGCACCGGCGCTGCGCCACCACCGTCGTCTCAAGATGACGCCCATCCTCAGGTCTGATGATTGATCCCGTCCCATCCACCTTAATTGCCATTGTAGCTAATTAAATTCGATCATATCGATGACAGTGTCCGGTAATCCATTCTCTGAAAAAAAATACGTACTATATTGTAGTATCTGACAAGGCTAGCTAGCTGTTTAATTTCAATTACAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGGCAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGAACGAGGAGGCGGTGCATGATATCCTAAACCGCGCCCTTCAGCACTCGAACACCACCAAATCATCATCATCATTGTCGTCTCCATCCGTCCTCCACAACATCCCTGCATTCATCCCGCACAAGGCCAAGGAGCTTCTAGCAGAGCTGGTGCTGGTGGAGGAGGAGATTGCCCCGCTGGAGACCCAGATCCGAAAGATGAAGAGGCGGCGGCCACCACAACTACCCAAAATGCAATCAACCTCACCCACGACGAAACTGTCAATGCCAATGGTAATAGTGGAAGGATCTGCAGCAAGGAGAATCAGGGCAAACATCAAGGTCCATGTTTTTTCATTAAGTCAGGGGCCATCAACGGGCCTCCAACCAAAGCCGCCCCTTCTTCAATCCTTCTCAGGGACCATCGGTCAGACAAATAAAACCTCCCCCCCTCCCCCAGTTCCAAAAAGTTTTAATTTCCCCTCCCAAGGAAAACAAATAAAAAGAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCACACAACCCCCCCCAAACAAAGCCGTGTGTCGGGGGAAAAAAGGAGAATTCCTTCCAAAGGGGGGGGGCCCCCCTCCCCTTCCGGTCGCTCTCTCTTTTTTTCCTCTCCCCCCCCACAAAATGTGCGGGGTGTCCACAGAGGGGGGGGGGTCCC | |||||||||
gi|313079217|gb|HO663798.1|HO663798 GS406S Goda Heenati Submergence VS control suppression subtractive hybridization reverse lib GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): ACAATTGCAATGTCCTCCCTTGTAGTGAACTCCTTAAATGCATCTTCAATTTGTTTGACTGTTGTTTTGTTATCAACAATAAGATAATTTGTCTTTTTCCTCAGATCAACATTGCCAACTCCAGCCAAAAGAAACCCAGTCACTGTGTCCTCGTCGGCGATGATGGCGATGAGCGCAGAGCTGTTGGTCGGGATGCTGGGCCTCCCCGCCATGGCGACCTCGACCAAGGTGAGGTGAAATCGGCGGCGGCTTGGGCAGGATGGGATCGATCGATTCCGGCGAAGGAAGCGGCG | |||||||||
gi|41883114|gb|BX928258.1|BX928258 BX928258 Oryza sativa library (Han B) Oryza sativa cDNA clone y654a04p5, mRNA sequence GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): AAATCGGCCATTATGGCCGGGCTGATCAGGCAGCATCAGGCAGGAGGGGGAGGTGGAAGCTTCAGAATCGACACCAGCCTGGTAATGAACAAACATAGCAGCAGCAGTTTGCGTACTTCGGCCGCACCTCACCTGCCAATCCTTGTACGACAGCGCCCTCCCAACCATCTGCTCTCTCTAAGCTCTAGCTCTACCTTTCTTCCTCCTCGATCCATCCATCATCGATCATTCTTCTTCTTCTTCACCTAGCTAGCTTGCTCCCGCCGGACGGTTCTAATATAATGAACCATCGCTAGCTAGTTCATCCCATGGAGGAGTACGTGACCGCGGGAAGCACTACTCCTCCGCCCCATCTTCACCAGCTGCTCTCCGGCACCGGCGCTGCGCCACCACCGTCGTCTCAAGATGACGCCCATCCTCAGAGCAGAAGAACAGTGCCCGCGCGGCGGCTGCGGCAGAGACTTGAGCAAGAGGTGAGTGAGCTGAAGAAGCAGCTGCGGCACGAGGAGGCGGCGCATGATATCCTAAACCGCGCCCTTCAGCACCCGAACACCACCAAATCATCCATCATCACTTGTCGTCCACATCCCGACACAACAAATACCTGAATCACTCGAAGCAGGCCAGGAGCTGAACAAAGATGTCGCGACGGAGAGGAATGCCCGCTGAACGCAGGCGAAGCGAGAAGCGGGGCCAAACGACGAAGGCGAATCGCCGAAACATCAGGCGGAACAGAGCGGCAACGACTGCAACGTCAAGCAGAAGCGGCAACAACCATACACACTACAGTCACAATACACGTGCTGATCAACAAACAGAGATCAACTCAGTCGACNN | |||||||||
gi|88977039|gb|CI024776.1|CI024776 CI024776 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): TTTACGGTATACAAGACTTAGTTTTTCTTAAGTACAACAGATCTTCCATTCCTCCATGATCCTATCAGCTTCTACACCCAAACCACACAAATCACCATGCACGAGCCCTCTTCCTCCACTGCCAAATCAACTCACCTGGGGCTTGAGTAGCCAAGCATCCATGTGGTGATCAGTAGCCGATGTCAGCGTCGTCGACGACGAGGTTGCCGGTGATGAGCTCACGGTAGGCGGCGACNNGGGCCAGATNNGAACCCCCTCGNNGGAGGNNAGCTTGACGGNNCGAGCTCGACGTCGANTNNGATGATCTCCCTCANNTGGCCGGCATTCTTCTCGCCGCTGATGGCGATGAGGTAGCTCCTGCCGACCCAGCCGATCCAGCCGGCGATGTAGAGGAAGAGCAAGCC | |||||||||
gi|86892528|gb|CI311980.1|CI311980 CI311980 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): GGATTTGTTGCAAAGGCACATGCACTTCGCTAGTTTCAGAGAAAGAAGACATTGACAATTCGAACATAGACGAACAAGAGAATTGGTTATGACAGCAAGCGAACTCGCTAACCATTAGCACTAGAGAACACATCGGTATCGTTTTCTTAAAATATGAAAAAAAAAAAGAGGAAAAGATAACATGGTGATATTTAGCCTCCGCACCATGGGGATCCACACCGTTAGATAACTTATTCTTCGAACGAGCAGGGCCCCCATTTCAGAGGTGAGATATAAAATGGCCCTGAGCGACGATGATGATACCACTCAAAATAATGGACACAGGTAGGACGTATCGATTGGCCAAGTTTTTCGTATCAGCACCGGACAAGGTACCATTATCTCGCGTCTCAGCACGGAATTGCCGAAGCAGCCTCAGTATGGCTTTGTTCTCCTCGGCACTTTTTTCACACGAGCCATTGTGAAGATCCATCTGAAGTAGCAGACGGAACAGCTCGTCTTTCTTCTCCTGCACTAGCGTCTCAAGACTTGCAGGGATCTATGTTGTTATGAACCTTGGCATCTGCGGCAGGATTTGGGCAAGGCAAACGATGCTTTTCTTTATATACCGAATCCAATCCGCTTCTTACAGGCCACCT | |||||||||
gi|33659484|gb|CF282097.1|CF282097 14ETL--09-H06.g1 Rice etiolated leaf plasmid cDNA library (14ETL) Oryza sativa Japonica Group GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTACATGAAAACACAACATGAACGTCGTCTTTATTTTTGCTGTAATTCAACTGGTTGGTCGACATCTCATTATTGAAACAAAATAGTGTTTACAATAGGCACAAAATGAATAACAATTTCAAAGGGTAAATGCTCCGAGTAGCTCTCCCTTTTTGCATGGACATAACCAGTTCTCATCGCCTATCTGACGCCACTGATTCAGCGGAAAATAGGTACTTCACGCGAGAAAGGACAGAATCGTGTGCTGGGTCATAAGGATGATCCTTCGATGGAATCTCCAATATAGCAGGAACCGGTCTGTTGTAGCTATCCACAAGAAATCTAATCATGTTTGCAACATATTGACTGATGAGTACAATTGCAATGTCCTCCCTTGTAGTGAACTCCTTAAACGCATCTTCAATTTGTTTGACTGTTGTTTTGTTATCAACAATAAGATAATTTGTCTTTTTCCTCAGATCAACATTGCCGACTCCAGCCAACAAAAACCCAGTCACCGTGTCCTCGTCGGCGATGATGGCGATGAGCGCANAGCTGTTGGTCGGGATGCTGGGCCTCCCCGCCATGGCGACCTCGACCAAGGTGAGGTGAAATCGGCGGCGGCTTGGGCAGGATGGGAT | |||||||||
gi|33793694|gb|CF322730.1|CF322730 HDN--01-O14.g1 OsHDAC1-overexpressing transgenic rice lambda phage cDNA library II (HDN) Oryz GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): GCACGAGGCCCACGCCCCCTTCCTCTCCAGGTCTCCCCCCTCCCCTTGTGCGACTTGTGTCGAACACCGCAGCCGCCACCCGTAGACGCGACCTCAGCAACCCCACCCACTTCCTCTCCGTGGGCGCCCGCCGCGCGTCTTGCCCCCAGATCCGGCGCCCACCCCAGCCGGTTGTTGCTTGCACGCGTGGATCACTTACAGAACCATGCGGCGGTAGGAACTTGGGCAAGATTCCAGATGGTTCGCTTGTTTGGATGCCGATCTTCCTTGTCTTTTATTTGAAACGGCGGGGGCCTCGCAAGGCTCCAAAGGTTATTGATCAATATCTGGATGAGTCATCAGCAGTGCATGCCTTGTTCTTCCCTGATGAAAGAAGTGCAGTGAACCCAACAAAAGGTGGAAATGACAGTATGTACTTCTATCCTGGTAGGGTGTGGCTGGACACTGATGGACATGCCATTCAAGCCCATGGGGGGTGGTATTCTGTATGATCATATCACTGCCAAATACTACTGGTATGGA | |||||||||
gi|58653654|gb|CK042334.1|CK042334 49439rsiceh_20119.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): GCACGAGGCACAACACAACCCTCCCCAAAACCTCCCGAAGCGAGCAAGATGTTCGGCTTCGGGCACCACGGCCACCATGGCCAAGACCAGCCGCCCCAGCACCACGGCGGCGGCGGCGGCGGCGCGCACCAGCCCACCTTCAAGATCTTCTGCCGCGCCGACGAGGGGTACTGCGTCGCCGTGCGCGAGGGGAACGTCGTCCTCGCCCCGACCAAGCCGCGCGACGAGCACCAGCACTGGTACAAGGACATGCGCTTCAGCGCCAAGATCAAGGACGAGGAGGGCAACCCGGCGTTCGCGCTCGTCAACAAGGCCACCGGCCTCGCCATCAAGCACTCCCTCGGCCAGGGCCACCCGGTGAAGCTGGCGCCGTTCAACCCGGAGTACCCGGACGAGTCGGTGCTGTGGACGGAGAGCGGCGACTTGGGCAAGAGCTTCCGCTGCATTCGCATGCTGAACAACATCCGCCTCAACTTCGACGCGTTCCACGGCGACAAGGACCACGGCGGCGTGCACGACGGCACCACCATCGTGCTCTGGGAGTGGGCCAAGGGCGACAACCAGTGCTGGAAGATCCT | |||||||||
gi|88992188|gb|CI035326.1|CI035326 CI035326 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GTCTTGCCCAAGTCGCTGCCG EST sequence (targeted fragment marked with yellow): TTTGAAAGCAAAAACAGCATATGACGAAACATAGGGACAAGCTAGTTAGCTTCACATTTCACATGATCACAGCGTCATTGTCCTGGCTACTTTCTTCTCCCTCGTAATCCATCAACTTCCAGTGGCCATCGGCGCCCCTCACCATGCCCTTGTCCCTCTGCACGCTCCACGACGGCGGGACGTGGTACTCCTCCTTGAGCGCGTCCACATTCTTGTTCACCAGCGCCACGTCCCGGTCGACCTCCAGCTTGAACCCGCCGCGCTTGCCCTGCGCCCCGGCGACGCCGTGCATGTAGCACTCGAGGCTGTGCCACACCGCCTGGTTCCCCGGCGACTTGAGGTACGGCGACCTCCTCGTGTCGACGGGGAGCTCGACGCCGACGTCCGCGTACCCCATCGGCGGGTACTTGGGCACGACGTCCGGCGAGTTGCAGACGCGGAGGAGGCGAAGGCCGGGGAGCTCGTCGAAGAGCTTTCTGAACCCGGAGTCCCCGACGCGCGGGCAGGCGAAGG | |||||||||