| mature miRNA: GTGCACGTGGAAAACGAGGGAGAGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88730379|gb|CI753992.1|CI753992 CI753992 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): ATACAAGCAAGAGGAGATGCCCTTTTCTTTTCTAAGGCTGCGTTCTTTCCACAAGATTCCCAACCCCTTTCCCTCGTTTTCCGCGTGCACGCTTTTCAAACTGCTAAATGGTGTGTTTTTTTGCAAAAAGTTTCTATACGAAAGTTGCTTTAAAAAAACAAATTAATCCATTTTTGAAAAAAAAATTAACTAATACTTAATTAATCACACACTAATGGACCGCTCCGTTTTCCGTGCGGTGGAGTTGGGTTCCTAACCCCAAGTATCAAACACAGCCTAAGTGTTTCTTGTTTCACTTCACTTGGCACTTGCACATTTGTCCAAAAAAGAAGCATCCTACGTATTTATAGCATTGCGCTAGCAGATCATG | |||||||||
gi|88258749|gb|CI361335.1|CI361335 CI361335 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): ACACTGCAAGTAAGCACTGCTGAATCAAAAGAGCTCAAAAACATGGTTGTCACCGTAGCATAAAGGGGAAGTGATGTCACATGTGTCCACTCACTACAATCAGTAAATCACATAAACAATGATGAATTCATCAATTTTACTCATGTCTTCAGGCCATCTTCATGCCATCACCTCAGGATAAGAAATCTTGCTGGGGCTTTGCATGATGGCAGATTGCCAGACTCCCTGCAACACATAATGAATTCGAAGACAAATTAGAAGGGTGAAAGCCTCCTACCAAATATATGCAGAAGATATTTCGATCATCATTATACAGCTGTGTTCGTTTCAGCCCACTCCCAACCCCTCTCCCTCGTTATCCGCGTGCACGCTTTTCAAACTACTAAACGGTGCGTTTTTTGCAAAAGTTTATATATGAAAGTTGCTTAAAAAATTA | |||||||||
gi|88570094|gb|CI661269.1|CI661269 CI661269 Oryza sativa (japonica cultivar-group) callus 50ppm CuSO4 for 1 week Oryza sativa Ja GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): GAGTAGCTGCCTCTCCCTCCGTCGTCTCCGACGCGATGGCGACGAGAGCTCGGCCATTGCTGCTGTGCCTGTGTCTCTGCTTCGCTTCTTCGTGCTTGAGCTCGGCCGTTGATGCTGCTGCAGCTGCCGGCAATGGCTACCGGACAACGGCGTTCCTGGTGGACGACGAAGGGAGGCGGCTCCGTGCCGAGCTCGTCGCCGGCGGCGGCGGCGGGAACACGGCGTACGGCGGCGACGTGCAGAGGCTAGATGTGTATGCCAGACTTTTGGCTGCACCAGTGATGGCTAAAGAAGGATACCACCCCAGTGGTTGTGGCGTGACAGTTGATGCCATCGTGGCAGTCATCGGATGGACTTGGCTGTGTTCTCTGATTCTCTCCCATGGGTTCTCAACCCATTTTCTCTCGTTTTCCGTGTGCACGGCACGATTTTCA | |||||||||
gi|53553036|gb|CO435584.1|CO435584 OsMR650 5MT resistant rice mutant cDNA library Oryza sativa Japonica Group cDNA, mRNA sequenc GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): TANNNNNNNCCCGCGGTGGCGGCCGCTNCNGACTAGNGNATCCCCCGGGCTGCAGNTNCCCGGCACGAGGANTCTCCGACGCGATGGCGACGAGAGCTCGGCCATTGCTGCTGTTNCTNCGTCTCTGCTTCGCTTCTTCGTGCTTGAGCTCGGCCGTTGATGCTGCTGCAGCTGCCGGCAATGGCTACCGGACAACGGCGTTCCTGGTGGACGACGAAGGGAGGCGGCTCCGTGCCGAGCTCGTCGCCGGCGGCGGCGGCGGGAACACGGCGTACGGCGGCGACGTGCAGAGGCTAGATGTGTATGCCAGACTTTTGGCTGNACCAGTGATGGCTAAAGAAGGATACCACCCCAGTGGTTGTGGCGTGACAGTTGATGCCATCGTGGCAGTCATCGNANCCCTTGGCTGTGTTCTCTGATTCTCTCCCATGGGTTCTCAACCCATTTTCTCTCGTTTTCCGTGTGCACGGCACGATTTTCAAACTGCTAAACGGGGAGGGTTTCCAACCCCTCCAAAAGAAGTATGGCGAGGACAGTAGTGAACCCTGGCATCCCTCACTCCAGTTTTCTCTCTTCACAGCTTGTANAACATTTTTATTTTTTTGANTTCANTTTCAACTTAATACTTGTCTCAAATAAAGGGCCTATANTTTTTTACGCAAATANTTATAAGCACNNAGTTCNGTTTTNGTAAATTTAAAGCGAATTAANTTTGATANATAATATANGAAAAAAAAAAANNNGGGGCCGGACATCCTAANAGGATAATNNGCGGTTAAGNGAGAACGGTCATACTGNACNTCNNGAAAANCCNACTCATGCCNGNGATGGATTNCNTTACTTAGAACTAAAGGTTTANANCNNATGNCCNTTGAACTGAAAGGCCNGGTTANTTNAANANTAANTAA | |||||||||
gi|117229766|gb|CT846270.1|CT846270 CT846270 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): GCCTCGCGAGCGAGCGGACGAACGGACGAGCGAGCGGGGAGCGCGGCGAGCCGGAGGCGGGGGGGCTGTGCGCCTCGGTGTCTCTTCTCCCCTCCTCCCCACCCTCCCCTTTCTCCGCCCTCCTCTCGATTCCCGCGGTTCAGGGACTTTGCTGATCTTAAATCTTATTCCTGACTGACTGTCATGGGCATGGAACATCTGCTGAACACCGCGAGTCCTTCATCAGGCTTTATTGAGGAAATGAGGGAGCTAGAAAAGCTGAGAACAGAAACAATGATGAAATCCTGCCAAAGCACTACAAGCAGGGCTGGAGCGATAAGATGTCCAGTACCACGCAAGAGTGGCAGGTATACTTACAATCTGGTTAACTGGTTTTAATATGATTCTAAATCTAAATTTCTTTGTCCACAAGACAATTGTGGTATAAACAAACATTGTCAAATACCCTCAGGGTGTGTTCGGATGCCTCTCTTCCCAACCCCTCTCCCTCGTTTTCCGCGTGCACGCTTTCAAACTACTAAACAGTGTGTTTTTTTTTTAAAAAATTTTCTATATGAAAGTTGCTTAAAAAATCAAATTAATCTATTTTTGAAAAAAAAAGCAAATACTACCTCCATATTTTAATGTATGACGCCATTGACTTTTTGTCCAACGTTTGATCATTCGTCTTATTCAAGAAATTTATGTAATTATCATTTATTTTATTATGACTTGATTCGTTATCAAGTATTCTTTAAACATGATATAAATATTTTTATATTTGCACAAAAA | |||||||||
gi|88962506|gb|CI097658.1|CI097658 CI097658 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTTTTTTTTTTTATGGATCATAAGAACGTTTAAAAATATATAGAGCATATATTCCAAGGAGTATTACACTGGTAGTCCAACCGAAAATAAATGCTTGCATGTAATACTAAACAAGCAGCTCTGAACAAAAGTAACCATAATAAAGTAATTAAGGCTGTGTTCTTTCCACAAGTTTCCCAACCCCTTTCCCTCGTTTTCCGCGTGCACGCTTTTCAAACTGCTAAATGGTGTGTTTTTTTGCAAAAAGTTTCTATACGAAAGTTGCTTTAAAAAAACAAATTAATCTATTTTTGAAAAAAAATTAACTAATACTTAATTAATCACACGCTAATGGACCGCTTCGTTTTCCGTGCGATGGAGTTGGGTTCCCAACCCCAATTATCAAACACAGCCTAAGTAGCTTTAACAACAGCCACATGACCCAATTCCACCGAACCCAAATAAAGCTTGCCGCCGCCTCTCTCAATCACCTCCG | |||||||||
gi|117217186|gb|CT845392.1|CT845392 CT845392 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): CTCGCGAGCGAGCGGACGAACGGACGAGCGAGCGGGGAGCGCGGCGAGCCGGAGGCGGGGGGGCTGTGCGCCTCGGTGTCTCTTCTCCCCTCCTCCCCACCCTCCCCTTTCTCCGCCCTCCTCTCGATTCCCGCGGTTCAGGGACTTTGCTGATCTTAAATCTTATTCCTGACTGACTGTCATGGGCATGGAACATCTGCTGAACACCGCGAGTCCTTCATCAGGTTCTAGCCATGCTTTAACTTGGTATGCATTGTTTCAATGTACAAGGAACCACTACTGACTGCTCATACTTTGGTTACATCTTACCCAAAAGGCTTTATTGAGGAAATGAGGGAGCTAGAAAAGCTGAGAACAGAAACAATGATGAAATCCTGCCAAAGCACTACAAGCAGGGCTGGAGCGATAAGATGTCCAGTACCACGCAAGAGTGGCAGGTATACTTACAATCCGGTTAACTGGTTTTAATATGATTCTAAATCTAAATTTCTTTGTCCACAAGACAATTGTGGTATAAACAAACATTGTCAAATACCCTCAGGGTGTGTTCGGATGCCTCTCTTCCCAACCCCTCTCCCTCGTTTTCCGCGTGCACGCTTTTCAAACTACTAAACAGTGTGTTTTTTTTAAAAAAATTTTCTATATGAAAGTTGCTTAAAAAATCAAATTAATCTATTTTTGAAAAAAAAAGCAAATACTACCTCCATATTTTAATGTATAACGCCGTTGATTTTTTATTTAACGTTTGATCATTCGTCTTATTTAAAAAATTTATGTAATTATTATTTATTTTATTGTGATTAGATTCATCATCAAATATTCTTTAAGCATAACATAAATATTTTCATATTTACACAAAAAAAATTGAATAAAATGAATGGTCAATCGTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|86427013|gb|CI072110.1|CI072110 CI072110 Oryza sativa (japonica cultivar-group) NAA treated callus Oryza sativa Japonica Grou GTGCACGTGGAAAACGAGGGAGAGA EST sequence (targeted fragment marked with yellow): GGATTTATACCAGACCCTTTCCTTCTCAATAAAATGATGCATAAGTCTCTTGTCTATTCCCCAAACATTCAAACTCCAGTATAAAAAGGTCCATCTGATGCCATTAATGGTTCCCACGGAGCACCTTGTATTCAAACCCTTACCCTAGCTAGTCCATAACAAATTACAAAAAATAAGGATCGAATTTGTACAGGCTACGTCAATCATGAAAAATATTGGCAGCTGGGTAAATTAGCGGGTGAGTTAAAATATTAGAACACGCTATATTTATCTTGTGCTGTTGTGCATATCTCACCCAAAATTGTACAGACTGAAGGAAATCAAAGCTCCACATGCTTGGGTACAGTGCGACCAACAAACTTAAGGCTGTGTTCGGCATCCCCTTTTCCCAACCCTTCTCCCTCGTTTTCCACATGCACGCTTTTCAAATTGCTAAACGGTATGTTTTTGTAAAAAGTTTCTATACAAGAGTTGCTTAAAAAAATCAAATTAATCCATTTTTGAAAAAAATAGCTNATACTTAATTAATCACGTGCTAATGGACCACTCCGTT | |||||||||