miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTGCCGGTTGGGAAAACCGGC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|41881645|gb|BX927521.1|BX927521 BX927521 Oryza sativa library (Han B) Oryza sativa cDNA clone p533a01p3, mRNA sequence

GTGCCGGTTGGGAAAACCGGC
||||||||||||||| |||||
CACGGCCAACCCTTT-GGCCG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTTTGAAAAACCCAAAGAATGAAATAGGTATTAAACTTTTACTTTTGGAATGAGAGAGTAGTACTAAGAAGTCAATCACGTGGAAACTTAATATGAATATGGATGGGTCCCTAACAGATTCCTAAACCATCAAATGCATCACGTGAAGCATATGTCATATTCCATGAGGCAGAAATTTCAAATAATTGCATATGGCATGCCAAAATATACTGTGGTAGATCTTCAATCTTGAAGGCAACTACAAGCTTAATATTCACTAGTACAGAAATCCTATAGGTGCCGGTTTCCCAACCGGCACCTATTGGTCGGCACCTTTGTCTCAATACTAAAATAAAAAAAGGCACCTCCAGTACCGCCGGTCTTCTCCACCGCCTCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAACAAAACCTCCGGTGAAGCCAACCCCTGCAAAGAAAACAAAAAAAGTAGAATACAATAGGCACACAAACGCGGCCACCGACACAACCCGCGAAAGACACCAAAAACCCAAAAAACACGCCACACGCGCCGCGCA



gi|86436928|gb|CI118650.1|CI118650 CI118650 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

GTGCCGGTTGGGAAAACCGGC
|||| |||||||||| ||||
CACGACCAACCCTTTAAGCCG

EST sequence (targeted fragment marked with yellow):
TTTTTTTAGAATTAATTTCGATCGAATGCATATAATAGTGGTGTACACCATACACGTACCGACGTACGTACGTACGTGCTTAGCTTAGTTAATTTCTGGCTCACTGCTATCTTAGTGTTGCTTACACTACTACAGAAACAACCATAGAACCACCATAGGTGCTGATTGGAAAACCCTCATGGGCGCCGAATTTCCCAACCAGCACTCAGTAGTCACGATTTACCGTCATCGATCCTGCAACGAGCAACTGCTGTTTTTCTCTTCCTTGGCCTGTGCACTTGTTGCTTCTTCGATGGTGACTTGTTGTGCAGCAGCAGCAGCTCCGGCCTCATTCTCCGAGTGAATGGCTAGTTGATCATCCTCAATGCTGACGAACTCATCGCTGGACTTGCCATCGCTACAAGTGCAAGCTCCGACCCAAGCATCCGGCTGCATCTCATCACCATCATCAGCTGCTAATTCGCCTTTCTGCACTGAGTCGGTGCTGTTCTCCTCATCAGCCTGAGACCCCATCATCAGCACTTGCATTGCGTGCCTTGCAGCATCGGCAGCCCACTCCTCGTGCTGCTGCTGCTCCAAAAATGATGATAATGGCACGACCTTCGCTTGTGCTTTCCTGAGCGAATCCAGTGCATT



gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

GTGCCGGTTGGGAAAACCGGC
|| |||||||| ||||||..|
CAGGGCCAACCATTTTGGTTG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG



gi|33675612|gb|CF303851.1|CF303851 ABF1--03-G06.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa

GTGCCGGTTGGGAAAACCGGC
||||||||.||| | |||||
CACGGCCAGCCCCTCAGGCCG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCTCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACCTCAGGGAAAGTGTATCCGAGTTCAGCAAAGCCGCGCGTTCAACTCAATGGGTCCAAAAGTGGTTTGCTAAACAAAGTTTCTTGTGACTCCCAGCAACCTCTTCAATCTGCTATCA



gi|86829112|gb|CI282836.1|CI282836 CI282836 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

GTGCCGGTTGGGAAAACCGGC
||||||||||||| |||.|
ACCGGCCAACCCTTTAGGCTG

EST sequence (targeted fragment marked with yellow):
TTGCCGGTCAGGTACCCGGTATATATAGGTGTCGGATTTCCCAACCGGCCACGAGCGTGGCACTAATATGAAAATAAAATAGGTGCCGGTTTAGAACTGGCACCTATAAGGATGAACGAGAAAAAAACAAATGCCGGCTCGGCTTGAATCAAACCGACCTAACCACATCGAGAACATTGTGAACACAGTGCACTAATCAAGCCGACCCGAGCACATCAAAAATTTCAAGAATACATCAAGAACATCATGAACACATTAACATCAAGATTCAAAAGAAGCCTCGCCCTTCGTGCCGCCGGCCATCACCTCGCCTTCCGCACCGGCCTTCTCCACCACCGCCACCGTCGTTGGACCGAGAGAAGGAGGAGTGTATCGCAGCGTTATCCACCACCGCTGCCACCGGAAGCCGCCATCGCCTAAGGACTGTCGCGGAAAGCCACCGATGTCGTGGTCGCCCAATGGAGAGGAGGAGGGGCGAGCCTCCCTTCCCGCCCGTTGGAGT



gi|89170170|gb|CI039447.1|CI039447 CI039447 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

GTGCCGGTTGGGAAAACCGGC
|||||||||||||||||||.|
CACGGCCAACCCTTTTGGCTG

EST sequence (targeted fragment marked with yellow):
GCCCAAAATTTGATATCCCCACATCCATTTTATTTTCCATAACTCGAGAGCATGCAGTCACTCCCAATCCACCGATAGCACGAAGGGGAGGGCCAATTACGTGGCACTACCACCGAAAAAGAGATTGGTGTCGGTTTTCCCAACCGGCACCGTGAAGGCGGCACTAATGTGAAAATTAAATAGGTGCCAGTTCCTGTGTTGGTTTCGAAACGACATCTAATGATCCCAAAAAAATAATGCCGACTCGGCTCGAATCAAGCTGATCCGAGCACATCAAGGACATCATTCATCAAGAACACATCAACATCACATTCATCTAGAACATCATTAATCAAGAGCACATCAACATCATATTCATCAAGAAGACATCAAGAACGAACACATCAAGAACCGTCTCCACCGCCGCCGCCATCGCCGGATGAAGAGCGCTGCCGAGGGAAGCCACCGTCGCCCGATGTAGAGGAGGAGGGGCGAGACTCCTCTC



gi|88217121|gb|CI216970.1|CI216970 CI216970 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft

GTGCCGGTTGGGAAAACCGGC
||||||||||| ||||| |||
CACGGCCAACC-TTTTGACCG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTAAGAGTGGGCAAAAGTTGTGCCTCCTATATTGATATAATAGGAGAAAATTGCACAAAGATATGTATAGGGCTTGTCAAAACCACATGCCCAGAAAAAAACAAAAGACCCTAAGTGATATCTTCGAAAATTCCAAACACCTGACACTAGTAAAATACCATCATAGGTGCCGCTAGGGAACCGGCTATAGGTGCCAGTTTTCCAACCGGCACCTATTGGTCGGCACCAATAAAAACAACCGACCCCTATACCAAAATAGAACCGGCACCTATAAGTTTGCACGAGCCAAAAAAAAAAAGAGCCGACTCGAATCGAGCCGGAACTCACAATCATCGTCACTACTCCATCCCCAAACCCCCACAAATCACGAATCACAAATCACATATCACAGATCACAGATGAAACATATTCAGAAATAAAATCATCCACAAATCACAAAAAAATCTAA



gi|117236571|gb|CT848954.1|CT848954 CT848954 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

GTGCCGGTTGGGAAAACCGGC
||||||||.||| | |||||
CACGGCCAGCCCCTCAGGCCG

EST sequence (targeted fragment marked with yellow):
AACGTGAATCCCTGTTTGAGATCATCCCTGCACCAAAAATCCAACTCATAAAGAAATTCATATTTTGCAAGTGAAATTGTGGGAACAAAAGGAAAAAAAGCCCAAAGCCAAAAGCCAAAGCCAAAGGCAAGACAGATTGTGACAGATTCCATATATTGTTTTGATTGTTTGCTCCTATCTCTAAGGAACTCTCCAACCTGAAAGGATTCCAACTTGAAACCAAAGCTTGCTGCTTCTTTTCTCTCATTTGTCTGAAATTCATCCATTTTTTCAGTAGACAAGGCAAGAAAAGGCAAGTTGTGCAAAGTTTTGTTCTTCAGATTAGCTTGGAGGCAGGCAAAAGAAAAAAAAAAGGCGCCAAACTTTGTGTGCTCCTGGATCATAGGAAGAAATATCCAAGAGATTGGTAAAAAAAGGCGCCATTTTTGAGAGAAAGGCGTCTCCTTGCGATCAAGCTGGTGATGTGATCGAAGAGTAGAGGCGGCGATGGAGGCGGCGGAGCTGGTGAAGAAGATACGGGAGCTGGAGGAGGGCCAGGCCGAGCTCAAGCGGGAGATATCCAGGATCGTGCCGGAGCGCGGCGGCGCGCGGCGGCCGCCGACGCTGCCCGCGCAGCAGAGGCGCACCGCGCTCCCGCAGGCGGCGGCGGCGGCGCCGTCGTCGCGGCTCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTC



gi|86260834|gb|CI000282.1|CI000282 CI000282 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

GTGCCGGTTGGGAAAACCGGC
|||||||||||||||||||||
CACGGCCAACCCTTTTGGCCG

EST sequence (targeted fragment marked with yellow):
TTTTTTAGAGATGTGAAACATCATGAAAATATTAAAATTGTCCAGTTGCGACCTTATTCCCAGAAAGCACTACTACAGAGAAGCTAATCGGTGCCGGTTGGGAACCGGCCTTAGGTGCCGGTTTTCCCAACCGGCACCATGGAGGTGACACCGATGACTTTCAGTCACGGTGCCGGTTTTAGAACCCACACCTTTGTGTCATGCCTAGAAATTTAGCCTAAATTTCCAGACTATTTTGTGTATTCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTAGAGCAGAAGTAACACTTCCGTACAGGCCTAGAAGTAAAGGCAACATCCACTGAGGAGCAGTTCTTTGATTTGCACCACCACCGGATCCGGGACCTGAAATAAAAGACAAAAAGACTAAACTTACCAGTTAACTTTCTGGTTTTTCAGAGCTTGGATCTGTAACGGCGCAGAACAGAAAACGAAACAAAGACGTAGAGTTGAGCAAGCAGGGTCAGGCAAAGCGTGGAGAGCCGGCTGAGTCTAGGTAGGCTCCAAGGGAGCGCCGGACAAAGGCCCGGTCTCG



gi|86526597|gb|CI166803.1|CI166803 CI166803 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group

GTGCCGGTTGGGAAAACCGGC
|||||||||||||||||||.|
CACGGCCAACCCTTTTGGCTG

EST sequence (targeted fragment marked with yellow):
TTGCCCAAAATTTGATATCCCCACATCCATTTTATTTTCCATAACTCGAGAGCATGCAGTCACTCCCAATCCACCGATAGCACGAAGGGGAGGGCCAATTACGTGGCACTACCACCGAAAAAGAGATTGGTGTCGGTTTTCCCAACCGGCACCGTGAAGGCGGCACTAATGTGCAAATTAAATAGGTGCCAGTTCCTGTGTTGGTATCGAAACGACATCTAATGATCCCAAAAAAATAATGCCGACTCGGCTCGAATCAAGCTGATCCGAGCACATCAAGGACATCATTCATCAAGAACACATCAACATCACATTCATCTAGAACATCATTAATCAAGAGCACATCAACATCATATTCATCAAGAAGACATCACGAACGAACACATCAAGAACCGTCTCCACCGCCGCCGCCATCGCCGGATGAAGAGCGCTGCCGAGGGAAGCCACCGTCGCCCGATGTAAAGGAGGAGGGGCGAGACTCCTCTCTCGCCGACACCCCTCCAGTTGCTAGGCGCCAC



gi|33675078|gb|CF303317.1|CF303317 ABF1--01-O22.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa

GTGCCGGTTGGGAAAACCGGC
||||||||.||| | |||||
CACGGCCAGCCCCTCAGGCCG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCTCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACAGCAAGCTCATGTATTGGAACCGGTACACGGAACATCTGCACGGCTATTCTGAACCTGAAGCACACGGTCACGATGCCCTTGAATTAATTGATCATACTACAGACTATG



gi|33675237|gb|CF303476.1|CF303476 ABF1--02-F22.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa

GTGCCGGTTGGGAAAACCGGC
||||||||.||| | |||||
CACGGCCAGCCCCTCAGGCCG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCTCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACCTCAGGGAAAGTGTATCCGAGTTCAGCAAAGCCGCGCGTTCAACTCAATGGGTCCAAAAGTGGTTTGCTAAACAAAGTTTCTTGTGACTCCCAGCAACCTCTTCAATCTGCTATCACCTCCAGGATAACAAATTTGAGTAACAAACACAGGCTACCAGGGTTACAAATAGAGTTCGCTCTCGGGTCAAGACGGGTCAGAATTGCGATGAATCAGTTCGGTGGTGCCTGTGAGAGCCATTATTCTGAACATGATGC



gi|88476632|gb|CI413903.1|CI413903 CI413903 Oryza sativa (japonica cultivar-group) 4 days after transferring callus Oryza sativa

GTGCCGGTTGGGAAAACCGGC
|||||||||||||||||||.|
CACGGCCAACCCTTTTGGCTG

EST sequence (targeted fragment marked with yellow):
GGTATCCCCACATCCATTTTATTTTCCATAACTCGAGAGCATGCAGTCACTCCCAATCCACCGATAGCACGAAGGGGAGGGCCAATTACGTGGCACTACCACCGAAAAAGAGATTGGTGTCGGTTTTCCCAACCGGCACCGTGAAGGGGGNACTAATGTGAAAATTAAATAGGTGCCAGTTCCTGTGTTGGTTTCGAAACGACATCTAATGATCCCAAAAAAATAATGCCGACTCGGCTCGAATCAAGCTGATCCGAGCACATCAAGGACATCATNCATCAAGAACACATCAACATCACATTCATCTAGAACATCATTAATCAAGAGCACATCAACATCATATTCATCAAGAAGACATCAAGAACGAACACATCAAGAACCGTCTCCACCGCCGCCGGCATCGCCGGATGAAGACG



gi|33676481|gb|CF304720.1|CF304720 ABF1--05-M04.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa

GTGCCGGTTGGGAAAACCGGC
||||||||.||| | |||||
CACGGCCAGCCCCTCAGGCCG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCTCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACC



gi|117217617|gb|CT852160.1|CT852160 CT852160 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

GTGCCGGTTGGGAAAACCGGC
|||||||||||| ||||. |
CACGGCCAACCCCATTGGTGG

EST sequence (targeted fragment marked with yellow):
GGCCGAGACAATTCGGTGGCAACGTTCACAGTTTGAGAAGTGATGACCAAGGCCCATCTGATGATAGGAATGTTTACTGGAACGGGAATTCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCACCGGCAATATCATGGCAGAGTTAAATATATACTTGGACAAATAACACGATCTAGGTAAATAAATACAAACAAATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACTTCTAGTGTAAAATGATAATACATCTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGCCGATTCTTCGTCAGTTTGGGTAGTATGGAGAGATATTTTCGTTTGCATTTTGTCTGTGTTTTTTCTGGTCAAAAGTTTATAATGTACTATACTCGTATGCCAGTAGGGAGTGCAATGGTAATTAATAACCTGTTGAAAGTATAATCCGCCATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAAAAAAAAGGGAGGGAAAAAAAACAAATAAAAAATAAAAAAAAAAAAAATTAAAAGGGGCCCCTTTTGCCCCCGGGGGGGGGCCCCCCCCCCCACTCCCCCTAGAGGGGTCCAATTTAGGCGCGTCGCGGGGGCGTCTTTTTTCCACGGGGGGGGGGGAAAAAACGGGGGCTCCCCCCTATTTTCCCTCCCTAAAAAACATCCCCCCCCTTCACGGGGGGGGGGGAAACACAAAGGGACCCCCCCCCCTACCCCCCTCCCCAAATTTGGGCTCACCCGCAAAGGGGGAAAAGGGCCCCCCCCCAGGCACCCCCCCCCAACCCCCCGGGGGGGGTGGGGTGGTTACCCCAACCGGCACCCTCCACCTGGTTCCCCCCCTCAACCCCCCCCCCTCTTTGTTTTTTTTTCTTTTTTTTTATTCGCGGGTTTCCGCGGTTCTTCCCCCCGAAAAAAAAAAAAGAGGGGGGGCCCTTTTTGAGGTTTTCCAATTTTGGTCCCCCCTGCCCCCCCCCCCCCCCCCAAAAAATTGTAGAAGGGGGGGGGGGGTTCTCCTCTTGGGGGGCCCCCCCCCCTCGCGAAAAAACCGTTTCTTCCCCCTTTCCCTCCCCTTGGCCCCCCCCTCTTTTTTAAAAGGAGAAGAGCCTCTTTTCCCCCACGCGCACACACACCCCCCCCCCCCCCCCTCTCGCCCGTCTTTTTCTTTTTATTTTTTTTAGAGGAGAAGTGTTTTTTGCCCACCCTCTCCCCCCTCCGGTGTGTAAAAAAAAAAAAAAAAGGGGGGTGAATAATAAATAAAAAAAAAAATTGAAAGGGAGAGACGAATTTTTAATAAACAAACAAAAATAAA



gi|88366719|gb|CI558893.1|CI558893 CI558893 Oryza sativa (japonica cultivar-group) root of seedling 2ppm NAA(naphthalene acetic

GTGCCGGTTGGGAAAACCGGC
||||||||||||||| |||||
CACGGCCAACCCTTT-GGCCG

EST sequence (targeted fragment marked with yellow):
CAAATAATTGCATATGGCATGCCAAAATATACTGTGGTAGATCTTCAATCTTGAAGGCAACTACAAACTTAATATTCACTAGTACAGAAACCCTATAGGTGCCGGTTTCCCAACCGGCACCTATTGGTCGGCACCTTTGTCTCAATATTAAAATAAAAAAAAGGCACCTCCAGTACCGCCGGTCTTCTCCACCGCCTCACCCGGCCTCCACTCCGCCGCCTAGCCGTGCCCGCCTCTGTGCCGTTGCCTCACCGCGCTGACCTCCGCGCCGGCAGCCGCCACCCAACTCCGCGCTGGAGGGGGGAGGTCCCCTGGGAAAGAGGGGGATGGCGAGATCCAGCCATCCTCCACCACCACCGCCACCTTACGCATGCTAAAGGAAAAGGGAAGGTAGGGGTGGGGAGG



gi|88986309|gb|CI033570.1|CI033570 CI033570 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

GTGCCGGTTGGGAAAACCGGC
|||||||||||||||||||.|
CACGGCCAACCCTTTTGGCTG

EST sequence (targeted fragment marked with yellow):
GATATCCCCACATCCATTATTTTCCATAACTCGAGAGCATGCAGTCACTCCCAATCCACCGATAGCACGAAGGGGAGGGCCAATTACGTGGCACTACCACCGAAAAAGAGATNGGTGTCGGTTTTCCCAACCGGCACCGTGAAGGCGGCACTAATGTGAAAATTAAATAGGTGCCAGTTCCTGTGTTGGTTTCGAAACGACATCTAATGATCCCAAAAAAATAATGCCGACTCGGCTCGAATCAAGCTGATCCGAGCACATCAAGGACATCATTCATCAAGAACACATCAACATCACATTCATCTAGAACATCATTAATCAAGAGCACATCAACATCATATTCATCAAGAAGACATCAAGAACGAACACATCAAGAACCGTCTCCACCGCCGCCGCCATCGCCGGATGAAGAGCGCTGCCGAGGGAAGCCACCGTCGCCCGA