| mature miRNA: TAATCCCTTGTATTATGGGAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86530074|gb|CI170280.1|CI170280 CI170280 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): TTTTTTAGTACCAAATACACATATGGTTGTTCACATAACACAAGGGATTACACGACCANATTTGCAGCAATTAACAAGACCCAACAAGGCGATCACACATTACTAATAGTACAAGATAATAATAATTCCATAATTCATCCAAAGCTAAGTTCTAAGTAGTATTTTGGCCACCCACACGGTGAAGAATACGTGTGGGGTGGGCTTACTGCGACGGGATGGGCTGCATCTCCGGCGCCGGCGAGGTGGCGGCGTCGGCGAGCGGGTAGCCGAACACCCTGGAGAGGCGCTCGGTGGGGACGAGCGGGAGGTAGGTGGCGACGGCGCTGCCGCGCTTGGCGCCGTCGGCCACTGCCGTGTTGTACCTCGCCGAGAGGCTCGCGGCGGCGGGGAGCACGGCGCGGGTCACCGACGGCACGAGCGGGAGGCGGTTCAGCGCCGCCCACGCCTCCGCCGCCTTGCGCTCCGCCACGGGCTCGTACCGGGTGTAGAGGTCCCGCGCCCTGGGCTCGGCGCGGGCGATCGCCGACTTGGCCAGCCCCGTCGCCGTGCCGAC | |||||||||
gi|29659886|gb|CB656161.1|CB656161 OSJNEc10C23.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc10C23 3', mRNA sequence TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): TGGAGTCCGTCGGGGGGCGCGGGCCTGCTGGCGAGCTGGTGCCCGCAGGAGGCGGTGCTGCGGCACGAGGCGGTGGGGGTGTTCCTGACGCACTCCGGCTGGAACTCGACGGTGGAGAGCCTCTGCGGCGGGGTGCCGATGCTGTGCTGGCCGTTTTTTGCGGAGCAGCAGACCAACCGCCGGTACAGCTGCACCGAGTGGGGCGTCGCCATGGAGATCGACGACGACGTGCGGCGCGACGCGGTGGAGGCCAAGATACGGGAGGCGATGGGAGGAGACAAGGGCCGGGAGATGCGCCGCCGGGCGGGCGAGTGGAAGGAGACCGGCCTCCGCGGGACGCGCCCCGGCGGCCGCGGGCACGCCAGCCTCGACGCGCTGGTCGCCGACGTCCTCCTCTCCGGTGGCAAGGCTCGGTAGGACAACGTGCACTAGTGCCGCCTGTTGCATGTTAGTGCCTCCCTCCCATAATACAAGAGATTTTGAGTTTTTGCTGGTAAGGTTT | |||||||||
gi|87031323|gb|CI261697.1|CI261697 CI261697 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): TTTTAGTACCAAATACACATATGGTTGTTCACATAACACAAGGGATTACACGACCAATTTGCAGCAATTAACAAGACCCAACAAGGCGATCACACATTACTAATAGTACAAGATAATAATAATTCCATAATTCATCCAAAGCTAAGTTCTAAGTAGTATTTTGGCCACCCACACGGTGAAGAATACGTGTGGGGTGGGCTTACTGCGACGGGATGGGCTGCATCTCCGGCGCCGGCGAGGTGGCGGCGTCGGCGAGCGGGTAGCCGAACACCCTGGAGAGGCGCTCGGTGGGGACGAGCGGGAGGTAGGTGGCGACGGCGCTGCCGCGCTTGGCGCCGTCGGCCACTGCCGTGTTGTACCTCGCCGAGAGGCTCGCGGCGGCGGGGAGCACGGCGCGGGTCACCGACGGCACGAGCGGGAGGCGGTTCAGCGCCGCCCACGCCTCCGCCGCCTTGCGCTCCGCCACGGGCTCGTACCGGGTGTAGAGGTCCCGCGCCCTG | |||||||||
gi|86509740|gb|CI152373.1|CI152373 CI152373 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): TTAGTACCAAATACACATATGGTTGTTCACATAACACAAGGGATTACACGACCAATTTGCAGCAATTAACAAGACCCAACAAGGCGATCACACATTACTAATAGTACAAGATAATAATAATTCCATAATTCATCCAAAGCTAAGTTCTAAGTAGTATTTTGGCCACCCACACGGTGAAGAATACGTGTGGGGTGGGCTTACTGCGACGGGATGGGCTGCATCTCCGGCGCCGGCGAGGTGGCGGCGTCGGCGAGCGGGTAGCCGAACACCCTGGAGAGGCGCTCGGTGGGGACGAGCGGGAGGTAGGTGGCGACGGCGCTGCCGCGCTTGGCGCCGTCGGCCACTGCCGTGTTGTACCTCGCCGAGAGGCTCGCGGCGGCGGGGAGCACGGCGCGGGTCACCGACGGCACGAGCGGGAGGCGGTTCAGCGCCGCCCACGCCTCCGCCGCCTTGCGCTCCGCCACGGGCTCGTACCGGGTGTAGAGGTCCCGCGCCCTGGG | |||||||||
gi|86603877|gb|CI114651.1|CI114651 CI114651 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): GATAAACACACATATTATATTCACTAGCATATCTCATGCATAGTTACAGCCCAACTAGACAAGACAACAACGAGGATCATATTACCGGCTTATAGACAAGACAGACAATACTTTTCATTTTCTTTATTTTTCTCTCTTTCTCATAAGCTTATAATTAACTTATAGCCTACTATTAAACTTACTATCAGATAGAAAATAAGAAAAATATATATATATTATATCAAAAAACAAGCTCTTGTGTACTCTTTCCGTGCTAAATAAATTTAACTTAAGAGGGGATGTGACCCTTTGTATTCATAGTACTCCCTCCGTCCCATAATACAAGGGATTTTGAGTTTTTGCTTGTAGTGTTTGACCACTCGTCTTATTCAAAAAATTTATGCAAATATAAAAAACGAAAAGTTGTGCGTAAAGTACTTTGGATTGGATAATAAAGTAAGTCACAAAAAAGTAAATAATAATTCTAAAATTTTTTTGAATTAACT | |||||||||
gi|117249985|gb|CT843829.1|CT843829 CT843829 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): CACTAGTGCCGCCTGCTGCATGCTACTCCCTCCGTCCCATAATACAAGAGATTTTGAGTTTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCTTGGGCCCCAAGGGGGGGCCCGGACCCCAATTCCCCCTAAAGGGAGCCGAATTACCCCCCCCCCCGGGCCCCCTTTTTAAAACCCCGGGACGGGAAAAACCCTGGGGTTCCCCAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCAGTGGGGGAAAAAACAAAAAGGCCCCCCCCAATCCCCCTTCCCAAAAGTTGCCCACCCTAAAGGGGAAAGGGAACCCCCCCTGAAGGGGCCCATTAAGCGGGGGGGGGGGGGGGGTAACCCCAACCGGGACCCTAACATTTGCCAGCCCCCTAGCGCCCGCTCTTTTCGTTTTTTTCCCTTCCTTTTTCGCCCGGTTCCCCGGTTTTCCCCGAAAAGTTCAAAATCGGGGGTCCCCCTTTAGGGTCCCAATTTAGGGTTTTTCCGCCCCCTCACCCCCAAAAAATTTGTTTAAGGGGATGGGTCCACCAAAGGGGCCCCCCCCCCTTAAAAA | |||||||||
gi|88213880|gb|CI213729.1|CI213729 CI213729 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): TAACGAAACATTATGGGTCGAACTGGAATAGTACCAAATACACATATGGTTGTTCACATAACACAAGGGATTACACGACCAATTTGCAGCAATTAACAAGACCCAACAAGGCGATCACACATTACTAATAGTACAAGATAATAATAATTCCATAATTCATCCAAAGCTAAGTTCTAAGTAGTATTTTGGCCACCCACACGGTGAAGAATACGTGTGGGGTGGGCTTACTGCGACGGGATGGGCTGCATCTCCGGCGCCGGCGAGGTGGCGGCGTCGGCGAGCGGGTAGCCGAACACCCTGGAGAGGCGCTCGGTGGGGACGAGCGGGAGGTAGGTGGCGACGGCGCTGCCGCGCTTGGCGCCGTCGGCCACTGCCGTGTTGTACCTCGCCGAGAGGCTCGCGGCGGCGGGGAGCACGGCGCGGGTCACCGACGGCACGAGCGGGAGGCGGTTCAGCGCCGCCCACGCCTCCGCCGCCTTGCGCTCCGCCACGGGCTCGTA | |||||||||
gi|117224462|gb|CT860386.1|CT860386 CT860386 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): CACTAGTGCCGCCCCTTGCATGCTACTCCCTCCGTCCCATAATACAAGAGATTTTGAGTTTTTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAATTACGGTCCTCTCCGCTGGGGGTGCCCACCCACCGCGCACCCTGCATTAGAGAAGGGAAATCCCCCACCCACCGCGCGGCAAATAAAAAACCAGTGGTGATGAAAAAACGGGGGGCCCACAACAATTGAACCCGACCAAAAGCCCCCTCCTTTCGCTTATTAAAAAAAAAAAAAAACCCACCCCCCCAGGCTTCCCCCTACAAGTGCTGAAACCAAAGGGGCAGTAAAGGGGGACGACCGCTTGCTCTTCAATATCCCCCTGCGGAGGTAAGTAATCACCGCGATGGTTCATTTATTTGTAAACCCCCCCCCAAGCGAGCCTTCTTTTTTTTTTTAATATTTTAATTCACGCGAAATCACGATGGGTCTCTTAAAAAAAAAAAATAAAGAAGGCCCCCCCCTTTGGTTTGAAATTTCTTTTTGTATTAACAACCCCCCTCCCCCCAAAAAAGGGTCTGGGGGGGGGGGGAAAACGAAGCGGGGGCCCCCCCCCCTCCTGAATAAGGATTTTTCTCCCCCCTTGTGAAAAAAGCAACCAAATACGTTTGAAATTTTTTTTTGTTTTTTTTCACCAATAAAAAACACAAAATCCAACCCATTCTTGTCCGCATTATTTTTTTTATGTATAAAAAAAAGGTTTGATGCGAAAAACACTAAACCCCCCCTCCTTCCAGAAAAAAAAAACACCCATGTGTCAAAAACAAAAAAAAAAAAAATGAGGGCACATTCTCCCCCTCTCAACAATGGCGGCCGCACCAACAATCCCTTTTTTTTTGGCCACCCCCTTTCTAGAAAAAAAAGACGGGGCTCGCCCCGCCCACCCCCCCCCCCAATAATAAATTATTAAATTAAAAAAAAAAAAAAAAAAAAAAATAAATAAAAAAAAAAAAAAATAATATTCTCGCTGCCTCGGCAAGTGTAATAAAAGACAAAAATAAAACAAACGTAGCGCTCCGCCCCCG | |||||||||
gi|29682678|gb|CB678953.1|CB678953 OSJNEf01N15.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf01N15 3', mRNA sequence TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): ATTGATGACTTGGTGGTGCGACCTTCGCGTCGATCGGGTACTCGTGTCACTGTTGCGTGAAATTGATGAAATAAACAAGCAAATAAAATGATGGCGCCATTGCCATTGCCAATGCGGGGGCTTTGTCGTTGGCTTAGGATCGAGTAGCGATGTGATGGAATGAATTTCTATAAAATCGATGCACTCCAAATGCCGAGTGATTTGGCTATGATTTGAATTTGCGATAGATGAATAGATGATGGAGACATGGAGTTGAGCAGGGGAAAAAACTGGTTGAGCAGGTGGTCGCTATTGCCTGCTAGTACTCCCTCAGTCCCATAATACAAGGGATTATGGGTAGATGTGACACATCCTAATACAATGAATCTGGACGTCTCACATCTGTCCAAAATCCCTTATATTATGGGACGGAGGGAGTACTACTACCAATTGTTGACTTTGTGAATCTAATCAAGTTCAGAGAGCCAACTACAAGTATATGTCATGGGTAGTGGGCCGAGGGATCGAGGCCCTAAGGATAAGGATAGAGTTTGTTGGATAGAATTAGACTGGGTCCTCTCTCCATCTATATAAGGATGGATTGTATCATCATTCTAACTGATAATACCCCGCGTGTTGTTGCGGGACTCAATGATTATTGTAAGTGCAATAGGAAAATACAAAAGGTATCTTGCCCCC | |||||||||
gi|29645429|gb|CB650436.1|CB650436 OSJNEb14O01.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb14O01 3', mRNA sequence TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): AGAGTAGTGATAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGGTTATTCCGGTGTCATTGATTTATCGCATTGATATTCTCTTGACAGCTTTTCATATATCCTGGCAGAGTCGGTTTGCTAGTATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTGTCTTGATAATTGATATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGTTAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAAACAATAAGGCAGACAGTTCGCTCATATTTCATAGCAAACCTAAGGATAGTAGGAATCAACTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTGAATTTTTCAGATTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACACCTTC | |||||||||
gi|88258814|gb|CI359204.1|CI359204 CI359204 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TAATCCCTTGT-ATTATGGGAC EST sequence (targeted fragment marked with yellow): GTACAATATTCCAGACTATTAACTTCTTTATAAGATAAACTCGTCCATACAGTTACACATTTTTCTTCTTTCATTTTTTTTTTTGGGGATTCTCCACAGTTCAGACGACACAATGGGGATGGGGGGCACATGAAAAAGAAAAAGGAAACAGGTGACATTTGATTTTCTTCTCCGACTGTTTATCTGATCGACCTATACTGTACACATACTCCGCTGCCAAGCCTTTTTATCTTGCAACAGCAGGATGACTGCTATCTGGACAGGAACTGGGGCTCTAAACCAAGCCATGCCTTTGCAGACTATTGAGCCCAAATGTAACGGCAAAATCACAATTGCTCTTTATTCACAGTTGCTGTATGACGACCTCATGGGTAGAGTTTCACCGGTATAACGATATTTCTTGCGGTACATAGGAGCCCGCTGTCTCGTGATGACAAGGGATTACTAGCCTTTGCAATGTAT | |||||||||
gi|88287245|gb|CI502602.1|CI502602 CI502602 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group TAATCCCTTGTATTATGGGAC EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTTTTGAGACATCAACCCTTTGAAGATTAGTTACGGATCTGTGTTCACTTGTTCAGCAACAAATGTGCTTCATATCTCACTGAAGTTCTAAAGTACAAGGGAATAAATTTAAAAGTGCCACGTTTTAGACTAAACCCAAAAAAAATGGCTGCAAAAGCTAACACAATATGTTGGAAATATTTTTTCCCTGCTCCAACCATTTTCTGCTGCCTTGAAGTAGACTCTGTTCTACACCCTGTTGTATGCCACGTTTTTGCTGAATAGGCGAAGGATGTAAACAACTTGCAAAGCGCTTGCACCCATGAAAGCTAGGTACTCCGCTATTGTGTAAAACATGACACGCCTTCTTGTGCTCTC | |||||||||