| mature miRNA: TACTCTTGATGATGTGGACGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29684112|gb|CB680387.1|CB680387 OSJNEf04P21.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf04P21 5', mRNA sequence TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): CTCCTTCCTTCCTTTCACATCATCATGAGTCCTCAACTGTTTTCCTCAATCCATTGAGGGACAAAAAAATTCAGTTTTCTTGGATTAGTTCAGTTCAGTTCCATTCCGAGTGAAAAAAAGGAATTCAGGCTTGCATTGCTTTCAACATGGGGAGGTCTGACTTTCTACCATGTGCTAAGCCTATATGATTGTCCTGCAATCACCGTTCATGGAGACTTGGAGAGAAAATGAGGCTTTTCTTTTGGACTTAACCTTGATAATGTTTTTCTTTCTCTGGATAAAAAGTTGTAGGTGTGAATGTGTGATGGTCCTATGGTAGCTTTATGGATAAAGTTGGACAAAAATGCAAATCTTGTATATGGTTCTAGCTAAAGAGTAGTAAAGGAGCTAATTGGCAGGTCACATTTTAGATACTACTCCTATGAAGGAGAAAACAATCTAAACAGTGCAATTTTTGAAAGAAAACTTTCTGTATAGAAGTTCCTTTAAAACTTCAAATAAATCCCTTTTTCAAGTTTGTAATAGCTAATAGTATCATGTGTTAATTGCCCAGCCAATACCGATCAGCCCAGTAGCTGATCAGCAAAACAGCCCAATGGAAAGGGTAGCTTGTCTGTCAGCTCAGTGACTACTCGCTGTTAGTGCCATGAACTTCACTAGAATCACTACTAAACTCTTAGTCAACCGTGTAAAAATTGCACCGTTGTACTCTTGGTACTCGTGGCTGGTGTTGCCTTCTTATTATGCAGATTAGCCGTAGTAATTCGGGAGTATCTGTTTTTGTCCTTGTCCTTTTCTCTGTGTAGCTTTGTATCTGAAAGTAGGCCATTTAGCAACACATCTCTATTGTAAAATGCTTTAACA | |||||||||
gi|29659139|gb|CB655414.1|CB655414 OSJNEc08N04.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc08N04 3', mRNA sequence TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): AGTACGGCCTGAACGGTCCCGGGAAGCACCTCGGCGTGGTCGGCCTCGGCGGGCTGGGCCACCTGGGTGTCAAGTTCGGCAAGGCGTTCGGGATGAAGGTGACGGTGATCAGCTCGTCGCCGGCGAAGCGGGGGGAGGCGCTGGGGCGGCTCGGCGCCGACGCGTTCCTGTCGAGCCGCGACGGCGAGGGAATGGCGGCGGCGGCGGCGACGATGGACGGGATCATCGACACGGTGTCCGCGGGGCACCCGCTGGTGCCGCTGCTGTCGCTGCTGAAGCCCAAGGGGCAGATGGTGGTGGTGGGCGCGCCGGCGATGCCGCTGCAGCTGCCCGCGTACGCCATCATCGAGGGCGGGAAGCGCGTCGCCGGGAACGGCGTGGGCAGCGTGGCCGAGTGCCAGGCGATGCTGGACTTCGCCGGCGAGCACGGCATCGCCGCGGACGTCGAGGTGGTCGCCATGGACGCCGTCAACGCCGCCCTCGGCCGCCTCGAGAGGAACGACGTGAGGTACCGCTTCGTCGTCGACGTCGCCGGCACAATGCACGCTGCCGCCGCCGCCGCTGCGTCGTCCTAGGCTCCTAGCTATGTAGCCTTCGTGTCAACGTGCTTGCGTGTCATTGTGTGTAACCGTGCAAGGAGAGGCGTTTGGTGTGCGCCGTTTTGGGGAAAATATGGGGGTGGAAACCACGTACACGATGGAAACTTGAAAACTACCGTTAGATTAAATAATAGACGCTTGAGATTTGTTCACGTCATCACGAGTAAAAATT | |||||||||
gi|58668594|gb|CK057280.1|CK057280 52757rsicek_0959.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTCATTCCAGTTTGATCTGAACATTAATTGAAAAGTATTATCTGAAAGTTGTTTTATATTCCTCCAGAACGAGACAACACGAAAGTACCACTTTCTGAATAAATACATAACTGCTGCTTTAAATGATTCTTTTCAATTAATGTTCAGATCAAACTGGAATGACTTCCTCCATACCATCAAGGGTATTCAATTACCAAGCGTGGATCATCTTGTTTCAACAATAGTACAGTGGTTTGAGAGACGAAGCAAAGCATTTGAACCTACCTATTTATATGGTGTGGAGAAGGGATATTTCTTGCTTTCAGAAGGGGCCAAAGTTCGTCATGGTGTTCGGACTATAAATATCACAATTTCTGCTCGAAATCCTTGCTTTGGAAATAGGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTACAAACAGCTTAGTGAACTCCCCTGGTCATGGCTATTTATACAACTTTCAAACAAAGGAGCTTTATGATCTCAGTTACGGACATGAACCAACAGCAGGTCCAACAAGATTTGGAGATTATTTAGTGACGAAATGTGGTGTACTTTTAATGTCACTCT | |||||||||
gi|117245739|gb|CT856387.1|CT856387 CT856387 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): AGTTTAGTCTACACGCGCAATATTTGAATTATTTTTTCCAACAAAATAATAAATCTTTAATATTATCATCGCATAATAAACCAAAATGGACACTGAGAATAAAGAGAACGAATACGAGTGTTGTTCGCGACATCAAGAGTACCAGTACTTGGATCAGATTCGGCATGTGATCAAGACGGGCATTGCGCGGTCAGATCGAACGGGCGTGGGCACCAAATCGGTGTTTGGCTTCATGTCACGATATTCACTTCGAAATGACGCACTCCCGTTGCTGACGACCAAAAAAGTGTTCCTGAAAGCTGTGATCGAAGAGTTGCTCTGGTTCATTCGCGGTTCGACAAACGCCAAGGAGTTGTCGGCGAAGGGCGTCAAGATCTGGGACGGCAACTCGTCGCGTCAATACTTGGACGCGTACGGATTTACGGACCGTGAGGAGGGCGACCTGGGCCCAGTCTACGGCTTCCAGTGGCGTCACTACGGCGCCCAGTACCAGAACATGCACGCCGACTACACGGGCCAGGGCATCGATCAGCTCAAAGAGTGCATCGACAAGATCAAGTCGAATCCGAACGATCGACGCATTATCATGTGCGCCTGGAATCCGGTCGACATTCCAAAGATGGCTCTGCCGCATGCCACTGTCTCGTGCAGTTTTATGTGAGCGACGGCGAGCTCTCGTGCATGTGAATCAACGATCCGCCGATATGGAACTGGGAGTACCGGTCCATAATACCTCCTATGCTTATTTAGACTACATGGATGGTTACATAACTTGGCCTTAAGGGGGCAGAATGGGGCACACAATCGGCAATTGCCATGTTTTTTGAATAATGTGAGTGCGCTTGAGGGAGCAAAAAAACCCCAACCCGAGACTTTTCCCGCTTTTAAAAATTAACCGCCAAGTAAGGGAAATTGAGGATTTCCAGTATGAAGGATTTCAAAGACTCAACTACAATTCGCTTCCGATCATTAAAATGGCAATGGGTGGCTAATTACCTCTTATTAAATAATATTTTGACCTTTTTTTAATTAAAAAAAAAAAATTAAATTATTTTTTTTTATTGAAAAAAAAAAAAAAGGAAAAATTGTTTTAAACCCGTAAAGTTTTTTATAAAAGAATTAATTTAAATTTTTAACAATTTTTTTTATAATTTAATTTTAAAA | |||||||||
gi|87021433|gb|CI274040.1|CI274040 CI274040 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): TCTGAAAAGATGTCATTGTAAAGTTGGTGAACAGAACACATGTCATACTATATAATATCATCTCATATCATCATGTAAACCAAAACAATTGTTTAATACCAATTGNAACAATCACATAATCGAGGGAGGATGCAAATTGCAAAAGCAGACAACAATTTTTTGTACAAAAAGGTTGGGCACTTGGACATTTTTAATAAAATTTTGTGGCAGGCAGCTCCAACTGAAACGTGCTGGTATATGGTGTGAACCAAGAAGCTGCACCTGCAGTGGCTTACTGGCAATTGTGCACATCATCAACAGTGTGGATGTGTGGCCACTACACCTTATTCTTGACCCAATCCTCCTTTCTATATTGTGAATACGACTGCAACATAAGCAGCTTGCTTTGTTTTCTTCTTCCTCCTCTTCCTCAAAGCATCATCAGGTCCATTTCATTTGCACATCCAATCAGAATCAGGCGTAGGCACCATTTGCTTGGAGGCCATGCAGAAGCAGCAGCAACTCCATTCCTCATGCAAGAAGTGCAGCAATAGATGTTTCATAGATTTCC | |||||||||
gi|117246867|gb|CT843708.1|CT843708 CT843708 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): CGCTGCCGCCCCCTCCGCTGCGTCGTCCTAGGCTCCTAGCTATGTAGCCTTCGTGTCAACGTGCTTGCGTGTCATTGTGTGTAACCGTGCAAGGAGAGGCGTTTGGTGTGCGCCGTTTTGGGGAAAATATGGGGGTGGAAACCACGTACACGATGGAAACTTGAAAACTACCGTTAGATTAAATAATAGACGCTTGAGATTTGTTCACGTCATCACGAGTAAAAATTTTACTCACAGATTTACTCGTGAGTAAAAATTTTACTGTGCGTGATAACGTGGATGATTCTCGAACATTTATTTCTCGATCTAACGGTAGTTTCCACAACATATATGGTCCACTGTATATTTTCTTCCGTTTTGGCGTGTGCGCCATCGATGGAGCAATAACAGTGGACCGTCATGGGTCGTGGGCCTGTGATAGGTTATGTGGGCCACCTCGAATTGGGCCCTTCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAATATGGAAAATTTAAAAAAAAA | |||||||||
gi|44670848|gb|CR284282.1|CR284282 CR284282 Oryza sativa library (Han B) Oryza sativa cDNA clone y821b05p3, mRNA sequence TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): TCCAGAGTCGACTGGGCCGTTGCGTGCGACATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCTCACNCAAAACGTGCATATCCACTTCTTCAACCCAACAAAAAGGTACATCATCCCCTCGCATCCATTTTTATTACAGCAAGTTGGAGGATCGGAAACATAGCACAGCAGACTGGGGAAGCCTACTCAACCATAATCCAGGATTCCAGGCCCTGCCGTTATTACCATACAACGTGAATTCAGGATGTACAGTGTACACCAGCCAATCATGGAGGCTGCTATGTCAAATTCACTTGAGGTTCTTATTAAACCAGTCGATCATGTCTGCCAGTGCTTCCTCGGCGCTCTTGACAGCAGTGGCATCGTCATCCTTGTATCTTACGGTCCATCCATGCTCGACCCCAGGGAAGATCTTGACAAAGTGAGCAATCTCTGACTTAGAAGAAAGAACCTGCTCAAACTGTTTTACTACTTCTTGGTGGGGACACATGGTCAATTTCAGATCCAAGTATAGCAATTGGGCATCTGACCTCTTTCATATCATCAAGAGTAACAAGAGAGGGGTGAACATCAAAGATGATGTGTCTCATAAAATTAGGTAAATTTACACACATTTTTAACCCGAGAATACTTGAGCCCAAATTAATATAGTTTACTATAAGGCAATAATGGTTGTATTACACCTTTTGGGTGGTTTATACATATGTGGGTAGATAAAAGGAAAGGATGAAATTTGGCTAATGAGCACGGAGTAGGATCAAGGTGAAACGAAACAAAGGAGGTTACGGGGAGAAATCTGAGATCAGTATATGTAAATGTAAGATAAGTGTGTTAAGAATATGAGGTGGCGAGAGATCATATTAATGTAGTTAGTACGTGTGCGGTGAGGAAAGGACTAGN | |||||||||
gi|88456182|gb|CI565832.1|CI565832 CI565832 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TACTCTTGATGATGTGGACGG EST sequence (targeted fragment marked with yellow): AAGGTGCATCCTACATTATGGATCTTCAGAACCTGGGGCGTTCAGCTGAGAAAATTCTAGAGGTTAATGGTTATAGGTTCAATATTTTGGCATCTAAGTTTTGGTCAACTTGGGTTGGTCCTGGAGCTAGAAGGAGCAAAATTATGTTCAGAACTTGGAAGGGAGACAAGGAATTTGAACCACAACCAGAGAATGCAGCTGACACAGCTATTACCGCAACCACTTCAGGAGTATCGGATTCGAAGACAACCTGTGGAGGGTTCTGCATACCATCCATTATCCGCAAAAGAATCATTTAAAGCAGCAGTTATGTATTTATTCAGAAAGTGGTACTTTCGTGTTGTCTCGTTCTGGAGGAATATAAAACAACTTTCAGATAATACTTTTCAATTAATGTTCAGATCAAACTGGAATGACTTCCTCCATACCATCAAGGGTATTCAACTTACAAGCGTGGATCATCTTGTTTCAAGAA | |||||||||