| mature miRNA: TAGCCAAGGACAGACTTGCCG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88306797|gb|CI671960.1|CI671960 CI671960 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TAGCCAAGGACAGACTTGCCG EST sequence (targeted fragment marked with yellow): GATTGCAGAACACAGAAGGCAAAGTCATATGGATGACTGAAATCCTACATAGAAGCGGCAGTCGATGGCATGCATCATCTAGTGGTGCATATCCTAGAGAAGTTCCGAGAGAAGTATAGAGAGACTATTTGGTGCTTGTTATCACCCAATGCTAGGTATGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAGCTTCCAGGTCATGCATGTANAGTGATGTATATCAATGTAAACCAGAAATATATT | |||||||||
gi|117246863|gb|CT843706.1|CT843706 CT843706 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TAGCCAAGGACAGACTTGCCG EST sequence (targeted fragment marked with yellow): ATCTGAACTCATCATTCTTCTCCTTCTCCTTCTTCTTCTTCCTCCTCTCATTATTCGCTGTGCCAGCTATGGTTAATTGCCAAAGATGAAATTAAGCAGCTAGCCGGGAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGCGACGACGATCGAAGGCGAGCGCTTCAGCTTTGTTAATTAGCTCTTGTTCTTGGCCAAATCCAACGCAATTTTGCAAGCCTAATCGCAGTGTAAGTTAATTTGATGATCAGTTAGCTTAATTAGTTATAATTTGCTGCCATTCATGCGTATTTCAGATCGAGCGTACTGTATCATGTTAATTAGTAATCATGTTCTTCTATAATTTAACTTCAATTTGATAAAAAAGTACTACCTCCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|218481232|gb|FG966910.1|FG966910 MA_LYP9_05694 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq TAGCCAAGGACAGACTTGCCG EST sequence (targeted fragment marked with yellow): GGCTGCAGGAAAATATGCTCATAGTTCCACTAAAACTGATGCTAAACTTTCTAATCAAGCTATACCCATATTGTTGTCGGTATTGACAACTGTCGAGGTGATTGTCAAAAAGCTTGGTGAATTTGTTAATCCATATTTGGAAGAAATTCTGGATTTGGTGGTTTTGCATCCGGAGTGTGCTTCTCGAAATGATGAAAAATTGGATGCAAAAGCAGCTGACGTTCGGAAGCTACTGACTGACAAAGTTCCAGTTCGACTTATGCTTTCACCTTTACTTAATCTGTACAATGGTGCTATCAAATGTGGAGAAGCAAGTCTGTCCTTGGCTTTTGAAATGCTTTCTACTCTAGTTGGTGCTATGGATCGGCTGGCTGTAGGAACTTACCATACAAAAGTTTATGAGCATTGCTTGGTAGCTCTTGATCTCCGCCGTCAACATTTGGACTCCTTGAAGAATATAGCTATAGTCGAGCAAAGTATTATCCATGCCATTACCACTCTCACAATGAAGCTTAC | |||||||||
gi|41882011|gb|BX927703.1|BX927703 BX927703 Oryza sativa library (Han B) Oryza sativa cDNA clone p596f07p3, mRNA sequence TAGCCAAGGACAGACTTGCCG EST sequence (targeted fragment marked with yellow): GGCGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTGTACAAATATTGCAGTTATATGACGTTATTAAGATCATAAGAAAATGTGATGCTACAGCAAAAAAGCATCAGCATGTTCAAATCAAACTGCATCAGATTAATGAAAGATCATCTTAATTTAACTTCAGTTTCACCTGTTTCTGTTGTGATGTTGTCACATCAGAAAGATCTGAAACTAGATCAAAAGATCTTACGCAGTTGAGTATTGATTTGGAGATTTGCATACTCTAACACTTCTATTCACCTGCTAGCAATTTTATGTGCATCCTGCTAAAGAACCTATGAGCAGCTGATACAAATATGCTTGCTTGCCTGCTTCCCGCGTGCCACAGACAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACAACTCTCAAGTCATTCACAAAGTCGGACTAGAGTCAAGTCAACAGGATCTCTTTCCCGCTGAATCGCCAAGCCTGTCCTTGGGTGAGGATCGTGAAAAGAAACGGAACCGGGAATCCCGTAACCAACAGCGCGAATAATAAATACAGGATTGGTACTAAAAATCAAGACCGGCAAAGGAA | |||||||||
gi|40489617|gb|BX899553.1|BX899553 BX899553 Oryza sativa library (Han B) Oryza sativa cDNA clone y699b10p5, mRNA sequence TAGCCAAGGACAGACTTGCCG EST sequence (targeted fragment marked with yellow): TCCGCATCTGTGGTACCGGGAATTCGGCATTATGGCCGGGGGCACGCTTGCAGATCAAACCACATGATAGAAAAGCAGCCATGGTAGGGGAAGGAAGAAGAGAAGTAGGAAGAGTACCTGTACTGTTCAGTATGCAGTAGAACCACTGAGGCAGCTTCTGCTGGGTTGCCATGCGCTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCTCTTGAGCATCCTCGAGGGCCATCTGTACCGTAGCTTGTTTGTGCCGACGATTTCCACCAAGATACATACGAATGAGTAAGTATGCAATGCTTAAAGACTGACTTATTACCTCAGAATCATGTCTCTTCAGCTCTGCATGTGCATTAGTGCATACATTACATGTTCAACATCTTGCTGTTCCTTCTGCAATGGACATGCATGAACTTGTAAGCAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTACAGGTGTGATGGGAAACCGGTTGGTACAAGTAATGCCTGGGTGATCCTTTGAGAGGGATAAGAAGGCACGATGTTTTAGATGGATGGCGGGAGGAGTAGGTAAGTGAAGGTGAGATAAGCTAATGGAGAGGATTAAGAAGTGTTGAGGTATATGGAACGGTATATGTGATTGGTCAGAAGGGAGGA | |||||||||