| mature miRNA: TCACAGGTGGGTCACCTGTGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86522179|gb|CI162385.1|CI162385 CI162385 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group TCACAGGTGGGTCACCTGTGA EST sequence (targeted fragment marked with yellow): TTTTGGTATCAAAATATAGATTTTGAATTTAGATGACTTTAGGTCCAAGTTTGACTGGAATCGGATCTACGGTTTAGGAGACATGGGCTTCTAAAGTTTGGGATTTGAATTAAATAGAGAAAATGAGAAAAGTCACTGTACAGGGGACCCACCTGTCAGGCTTTTCTTTTTCTTTTTCTTTCTCTTCTTCTTCTTCTTCTTCCCGTCTCTTCCTTCTTCTTCTCTCCGGTCGAACAGAGAGGAGGAGGAGAGGGGCGTCGGGGCTCCAGTAATCGGAAGGCGGCGACGCCGACGGCCGGTGGTGTTCCCGGGTACAGCACACCTAGGTAAGGTAGTGGCCGGCAGAGGGGGTTAAGGGAATGGCCGGAACGACGAGCTCAAGACCGTGAACCGGCAGGAGAGAGAGAGCTCCGGTGGGGCTTGAAATGGGACGAAAGAGAAGGGGAAAAGTGGAAAAATGGATTCGCCGGAGTAAGGCAATGTTGGTGGTGAGAGGATTTGGTTAGTGGTGCTCCGGTGAGAGAGATCGGCCGACGGTGGCGGCAGC | |||||||||
gi|33661194|gb|CF292161.1|CF292161 14ROOT--02-O03.b1 Rice root plasmid cDNA library (14ROOT) Oryza sativa Japonica Group cDNA cl TCACAGGTGGGTCACCTGTGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAGCGACCAACCACTTTTTCCTGAAAAAACAGTTTTGGAAAATCCGTCAGGGGAGGAAAATCATACCTGTAATGGGAGTTTCTCACCAGGGCAAAGGATGATCGTTTAGGTAAAGTCAACAAATGTCATTCTTCAAATAAAAAAAAAAATCTTTTATTTGTAAATCTCTCCAAAAAAAAGGACAATCCCTCCGATTCTGATAACATGACCCCAGTTCCCAACGAAAAAACCCCGGACAACAACGTTTGTTCTCCCCTTTGCACATGCTTACAAAGGTCCAGGGAAGGTGCCGTTTTCCCGTTGCTCATTCCAACGCTCAACCCATTCGCCTGGGCAAAAAAATCGATAGTTTTTTGCAAACTTATCACACTCAGGAGCATCCTCCCCTTTCGCAGCTACCCACCTGTGATACTCAACATAGCGTGTGAAACAGGGCCTTGTTTGATTTGTTGTTGGAAAACGGAAATCTGCTGGACCCGT | |||||||||
gi|88221525|gb|CI221481.1|CI221481 CI221481 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s TCACAGGTGGGTCACCTGTGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCTAGCCAATATTTAGCATTTATTTTTTTTCTGGAATTAACTCATCAGTGACGGTTCGGAAGAAACATCCGTCACAGGTAACCTCACCTGTGACGGACTCGCAAACGTCGGACCGTCACAGGTGACCCACCTGTGACGGGCTTTTACTTTCGGGCCCGTCACAGGTGGGTCACCCTGTGACGGCTACTATATACCGGAGATCATCACCTCTGACGGGCCTTTATATAGGGGCTCGTCAGAGATGAGACACCTGTGACGGGTCCTAACAAGCCCTAGTCTAGCTTAGACCAACACCTCTGACGGCCTTCTATTACCTTGCCCGTCAGAGGTGGATGTCACCACTGAAGGCCGGCCACCCGTCAAAGGAGACTGGACTTA | |||||||||
gi|29620662|gb|CB625673.1|CB625673 OSIIEa15C04.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa15C04 5', mRNA sequence TCACAGGTGGGTCACCTGTGA EST sequence (targeted fragment marked with yellow): CACACATCCACACACAACGTTGACAAGCACACATCCACACAACGGCAGTCATTGCAGAGAGCTAGCAGCTAGCTTAGTTAGGTGAGCAGTGGCTGCAAGGGCAAGTCATGGCGACTCTGGAGACGTGGGTAGGGTTCGGGTCGGCCATGGCCGGCGTGGGCTTGCTTTGGTCCCGGATGCCGGAGCACGTCCATGAGGAGGCTAGGTACATCATCAGTAGCGTCGTCCCCATGGTGATGTCCTACTTCAACCCCTACGAGCAGATCACCGTGTCGGAGTACGGCGGAGAGCGGTTCCGGCGGAACAAGATGTTCGACGCCGTCTCCACCTACCTGAGGAGCGCGTGCCTGGGCAGCGCAACCAAGCTCAAGGCCGAGCTCGGCAACAACATCAGGGATGACCCACTTGTGATTCTAGACGAGAACCAGGAGGTGGTCGACTGCTTGGATGGTGCCCGCATGTGGTGGAGGCTGTACCCCAAGGCCTCCAAGAACACGGGGAGCACCATCATCAGCATGTTCCCCGGGGACACGGACGAGCCCCGGTGCTACAGGCTGGTGTTCCACAAGCGCCATCGCCAGCTTGTGCTCAAGACCTACCTACCCGGCGTCATCCGGCGGTGGCGCGAGCTAACCGCCAAGGACCGGCAGAGGCTGCTGTTCACCAACCACTCCAGGCAAGGGGAGAGCATGTGGACCAGTGTCCCGTACAATCCCCCGGCGACATTCGACATGCTCGCCATGGACCATGCCAAGAAGGTTGAGATCATGGACGATCTCAGGGCATTC | |||||||||
gi|66915726|gb|CX102574.1|CX102574 RECm3574 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TCACAGGTGGGTCACCTGTGA EST sequence (targeted fragment marked with yellow): GTCCTGCAGGTACGGTCGGAATTCCGGGTCGACCACGCGTCGCGATAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCCACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGTGGTCGGGGAACCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCAGTGGAGGGAGATGCACCCCGACGGCGACCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGCCCCCGCTTCGCCTCTCGCCTCCGCCGCCGGCCTCGCCGGTGCGGTTTCTCTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCGCCTCTCGTTACACGTGCATTCGCATTGCTCTCTAACGTGTTCGACCGGCGGTTCTCAGCGGATAACGTGTGATCATATTTTGGGGGATCGAACCTGTTGGTCTCTGGCCTGGTACCTTTGGACTCCTTTAACTGGGGATTTGGCACAACCACAAGGGCCGGCGCCTAAGGATCAAGATACTACGTGCATTGAGCTAAGCCCTATGACCACGAAAGACGCGGGTGACCCAGCTGTGAAAACCGGTGCACATATTGCGACGCTCTGCGTGTAAACCACGCCCTAAGATAGTGGCGACAACGTGTTGTTACCCTCTCTTTTCTTTTTGATCTGCGACNCCATCCTGTCTAGTCTTACATTAGTCATATAGTCACTGTGTACTTCCTACGTGTTAATATGTACGA | |||||||||
gi|117227077|gb|CT859489.1|CT859489 CT859489 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCACAGGTGGGTCACCTGTGA EST sequence (targeted fragment marked with yellow): GCGGAGGCTGCAAGGCTTTCCGCTCTCCCGTGGTGCCCTGATTTTGCGGATGTTCGCGTGCGTGGCCCCCCAATCCCCGTGACCCATGGGAACATGCGTTGCTCTAACCTAAATAACTGGCCGAACTACTGTACTTCAATCCTTCCCCTTAAAACCTTTTATAATAAACATGGATCTTGCGCGCGGAAAATATTATCCAAATCACCCCCCTCCGCCTTTTTCCGACCCACTTCCGGTGTCTCGTCATCTGTCCTCGCCGGAATCCTCTCCGCGGCCCCCCGTTTGTTGACCGTTGGGTTAACCCTCCGGTAAGACGTCCTGACTGGTCGAGCCGGATCCGCGACTGGGAAAGGAGTCCTCCACCCGCAGTTGCTCATCGTTATATTCTTTGTCGGTATGGCGGGAAAACAACTAGAGATGTTCTGTTATATTCTTTTAATATAAAGAAAAACCACACGTACATCCACAGAGTAGAGTACAACTGAGGTGCCTCTCACTTGACCCACCTGTGATGGTGTTCCTTTTGTCTAAGACGCTTGCGCCAATTATCCCCCCCTTTCTCCTCTATATTCCTCCCATCACTATTATCCCCCCCTTGTCTATTACACTTAGGAGTCAACACTCAACGTCCCTAACATACCATATCATGTACTCCTATCTTTCTTTTCTCTTTATGTCATTGACTGCCCTCTTTCAAAGAGTGCAACTACTGCCGACGTGCTGAACCTCGTCCCCTCTCATACACGCTCTCGTCTG | |||||||||