mature miRNA: TCAGGTTATAAGACTTTCTAT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|88725119|gb|CI748378.1|CI748378 CI748378 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): AATTTTAAATTGACTTCTACTAGTTACTTCCTCTGTTTCAGGTTATAAGACTTTCTAGCATTGCCCACATTCATATGCTAGAAAGTCTTATAACCTGAAATGGTGGTAGTATATAATAAAATAATAAATTTTAAAATAGTAAATTTGACTGCTACTAATATATTACTCCCTCCGTCCCATCATATAGATGATTTTGGAGGGATATGACATATTCTAGATTACATCCGACAAACAGCCATGCCATTAGATAGATCCGCTCTGAGTTATAGGATGAGATCTGCTTGGTCTTGTTAAGGCGATTGAGAGGAAGAAGAGGGAATTTTTGCGAAAAAAAGAATGAATCTCTTTATTTATAGGGA | |||||||||
gi|44672121|gb|CR285555.1|CR285555 CR285555 Oryza sativa library (Han B) Oryza sativa cDNA clone p780b09p3, mRNA sequence TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): CTGGGCCGAGGCGGGCGACATGTATTTTTTTTTTTAATATTTTTTTTTTTTTCGCTACAAGGATTACATGAGTACATCATCTGTATGTGTGTAAAACCATCCCTAAAACAATGCACGTTGTACACTCCCGGCACAACAAAAAAACAAGCTTGAATGTAATCTGAGCCACCAATCTGGACCCAATCACTACCAACCTACACTACTTACAAAAATCACACTATATAAGTAGGTTTCCCATCTCTGTATATAATTACAAAGTTAGAGCAAATCTTGTAACCTGACCAATCAGCTGCACGCAATATACAATTAATTAGCCTTGTGCTCATGGTAGCCTTCTATGTCCTACACCAGATTATAGTCGAAAACCAAATCCAAATCCAGGAGGATCAACATGTTACGAAGCAATCATCTCGGCCGATGCACTTGGAACTTGGACACATAAGTAACCCCATAATTTAAGTCCCATAATTTCAGAAACCAAAGATCCCCAAAACTCATAATCCGAGAACTCCAAATGAATATACGAAAATATTAAAGTCACAACATTACAATTGATACTGGCCAAAACCATAAGAGTCATTATATATTCCTCTATATTTACACACACTTATAATTCCCTTAG | |||||||||
gi|87028009|gb|CI276365.1|CI276365 CI276365 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): GTTTTTGAAGCATGAGAGGTGTCTACAGTTAATATTCCATCCTTATACTGTAAATATCTCAAACACATCTTAAAATATATGCCCACGCGAATGCGCGGACTACCTTCCTAGTTCATATGAACGTGGGGAATGCTAGAAAGGCTTATAACCTGAAACGGAGTGAGTATAAAATACTACCATGATGCACGATATGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGCCGCCTGCCTCATCCGCGCCGCGTCCGTCTGCAAGCGCTAGCGCCGCGTCGTCGTCGTTGATGCCGCCGACGGTGCAGTGTCTTCCTCCGCCGCTTCCGTGTCCACCACGGGCCCGACCTCGTCGGCCAATACCACGCCGTTGGCGGCGCGGTCTCCCATGCGGCGTTCGTCCACGTCTCCAG | |||||||||
gi|86498683|gb|CI141316.1|CI141316 CI141316 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): TATCTCAAACACATCTTAAAATATATGCCCACGCGAATGCGCGGACTACCTTCCTAGTTCATATGAACGTGGGTATGCTAGAAAGTCTTATAACCTGAAACGGAGTGAGTATAAAATACTACCATGATGCACGATATGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGCCGCCTGCCTCATCCGCGCCGCGTCCGTCTGCAAGCGCTAGCGCCGCGTCGTCGTCGTTGATGCCGCCGACGGTGCAGTGTCTTCCTCCGCCGCTTCCGTGTCCACCACGGGCCCGACCTCGTCGGCCAATACCACGCCGTTGGCGGCGCGGTCTCCCATGCGGCGTTCGTCCACGTCTCCAGGCCGGTTCTCGTCTACGGCTGCCGCCTCTCACTCGACTTCGTCCCGGACACCGCCTCCTGGACGATCGCCGAGACTCCGACAGCCGCTGCTGCCCTGATGGCCTCATCGTCTGCGAGCCACTTACGCGGCGCTACCAGATGGTCGCCGTCCCCAC | |||||||||
gi|117217329|gb|CT852015.1|CT852015 CT852015 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): AAATCGTAGTCGTCTTCTTCACGCGCACGGCGCACCCAGATCCAAGCGTCCATCGCCGCGGCCGCATCCGCCATGGCTCCGACGGCGCCCACGGCGGCGAAGTCCGCCTCCCCGTCCCAGCCATCCGGGAAGAGCGAGGTGGCGGATCTGAAGCAGCAGCTGCGGCAGCTGGCGGGGAGCCGCGCGCCCGACGCCGACGACCAGCGGAGGGACGTCTTCAAGCGGGTGATCTCCTGCATGACGGCCGGCATCGACGTGTCGGCGGCGTTCGGGGAGATGGTGCTCTGCTCCGCCACCTCCGACGTCGTGCTGAAGAAGATGTGCTACCTCTACGTCGGCGTCCACGCGCGCAACCACCCGGACCTCGCGCTCCTCACCATCAACTTCCTCCAGCGCGACTGCCACGACCAGGACCCCACCATACGCGGCCTGGCACTCCGCAGCCTCTGCTCCCTCCGCGTTCCCAACCTCGTCGAGTACCTTGTCTCGCCGCTCGCCACTGGGCTCAAGGACCCCAGTGCTTACGTCCGGATGATCGCTGCTGTTGGTGCTGCGAAGCTGTATCACATATCTGCCACCGCCCTGCCTGATGCTGACTTGCCTGCGGCGCTCAAGCGCTTATGCTCTCTGATCCTGATGCACAGGTGAGTTGCCCATTCACAAACAATGTTGTGAATATCATGCAACTATGATGCTGCTACCTGTGCAATGGATCATTATCTGTAGATTATAGTGCTCACAATACCGTTTATTTACCACGAAAAGTCTATGACATCTGTAGTGCTGATTTTAAAGTTGGAACTGGTAAACAAACCATAAGGGATTTATACTTCTTGCATGGCAATGGTGAACTGAACCTGGAATTTGGTTCAACATGCACCCGGCCAAACCGTTTCTAATTTGCAATTTGTCTAAAAAAACAGGGGGGGGGAAAGGCTAAGGGAACGGCCGGCCAGGGAATTAAACCTCCTGGAAAAAAATTTGGATTTTAAACTGGGGGGAACAAAAAGGGGGGGGGGGAAAATTCTGGGGACCGAACATTTTTTTGGGAGGGGAAAAAAAATATGGGGGGTTTTATAACCTGGTGGAAAAAAAATCTTTTGAGGCCCCCCCTTGGGAAAGGAAAAACACCCCCCCCCCCGGGGTGTTTGTTGTCAAAAAAACAAAAAAAAAAAAAAAACACTCCTACTTTTTAACCCCTACCTCAA | |||||||||
gi|29681180|gb|CB677455.1|CB677455 OSJNEe14G14.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe14G14 5', mRNA sequence TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): ATTCGTCGTTCGTTTTGTGCATCCATCCAGAATTCGTTCCAGATCCAGCCAGCCAGCCATCTCAAGCTTCTCTCTTCTCTTGTTATTAAGAGCAAGCAAACAGTAGTCTAGCGAAGCGAGACTGCGAGAGCAGAGCATTGTTCTTCTTCTCTAGCTATTAGTGGTGGGGAATAATGGCTCCCGCCACCACCGCAGCAATGGCCCTCGCGCCGCCTCCTTCCCATCACCATCACCATCACCATGTCAAGCAGCTGCAGCTCCCTCCGTCTGTCTCCGTCTCCGTGCCCCTCCGCTCCGGTTTCCTTGGCCGCGCACTGCCTGCTGCTGCCCACCCACAGCCGCTGCTCGCCGCCGAGAGCCGCCGCAGCAGCGCCGTGTCCGTGCGGATGTCGTGGGACGGGCCCCTCTCCTCGGTCCGCCTCATTATGCAGGGCCGCAACGTCAAGGTTCTCCTCTCCTACTGCTACCACTAGTTTGCTTCCCTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATGATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTATATATAATTCGGTAATGGAACTAGAGTATTTGTTTTATTAATTGGACCTTTATGAAATACTAGTAGAATTCAACGAAACTACATTCTTCTTTATTGGTTATATTAGTAGTAATTTGCTTCACTAGAATTCTATTTTATACTAGAGAGATTAAAAATTATTACAAAACTAACTGTATACCCGTTGCAACGGAATAGTAATATGGACCTATTACTTATTACTACCTCCATA | |||||||||
gi|117231808|gb|CT853983.1|CT853983 CT853983 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): TTGTATACCGTACCTCTCTCTTGTGTGTATTTACCATCTTAAGATTCTTGAGAACAATTCCTTCGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAAAAAAAAAGAGCAGAGCATTGTTCTTCGGGGGGACCTATTACCGATGGGGAATAATGGGTCCCGATACCACCGCACCAATGGCCCTCGTTTTACCACCTTCCCATCAGGAAAAACCATCACCATGTCCCAACATATGCAGCTTCCTCCAACTGTCTCCTTCTCCGTGCCGCTCCAATCCGAAAAAGTTGGCCGCGCACTGCCTGCTGCAACCCACCCACAGCCGATGCTCGAAGGGGAGAGCCCCCGCGCAGCGCCTTGTCCGTGCGGATGTCGTGGGGATAGGCCCCTCTCCTCCGTCCACCTTATTATGCACGCCCGCAACCTCAACGTTCTCCTTTCTTACTGCTATTACTAGTTTGCTTCCCTGGATTTTCCTTCGATTCATATAATAAGGGTTTCTATTATTACTCATATTTACATATATATATATATGATAATATTAAAAATTCATTATCATATATATGATTATAGGTAATGCTAGAAAATCTTATAACCTGTTACAGACGTAGTATATATAATTCAGTAATGTAAATAGAGTATTTGTTTTATTAATTGGACCTATATGAAATACTAGTAGAATTCAACTAAACTACATTCTACGGTATTGGTTATATTAGTACTAATTGGCTAAAATAGAATTCTATTTATAAAAATTAGATTAAAAATCATTAAAATCTAACTGTATACACTTGGCTGCGAATTTGTGAGAAAAAGCTACTACAACCACTAACTTTATATTTTAAAATAACATCCCATTAATTTTCCGTCAAGAAAAAACCACCCATAAAAATAATAAAATTATGAAAAAAAAAAAAATTTTATATTACCTGTTTCCGCTTCCCCCATTTTTTTCATTTTGGACGAAATTTTTCTTTCATTTTTTTAACAAAAAAAAAAAAAAAGGGAAAAATAGAAATATCAGAAAAAAATCTTGTGGGGGCAAAAAAAGGGTTAAAAACTAAAAAAATTAAATACCACAACCGCCGGCAAAAAAACCTTTATTAAAAATTTTTCCCCCCCCAAAAAAAAAATTTTTCCTAATAAGGGTGAAAAACACTTTTTTAAATAAAATTTTCCTTTTTTTGTTTGGGGGGGCGGCGGCCCGCCTCTTTA | |||||||||
gi|89196177|gb|CI397179.1|CI397179 CI397179 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): ACAGTTAATATTCCATCCTTATAACTGTAAATATCTCAAACACATCTTAAAATATATGCCCACGCGAATGCGCGGACTACCTTCCTAGTTCATATGAACGTGGGTAATGCTAGAAAGTCTTATAACCTGAAACGGAGTGAGTATAAAATACTACCATGATGCACGATATGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGCCGCCTGCCTCATCCGCGCCGCGTCCGTCT | |||||||||
gi|88489324|gb|CI426596.1|CI426596 CI426596 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte TCAGGTTATAAGACTTTCTAT EST sequence (targeted fragment marked with yellow): CAGAATGATTTTTTAAATAAATACTTCCTCCGCTTTGTATTATAAGACTTTCTAGCATTGCCCACATTCATATATATGTTAATGAATCTAGACATATATGTGCCTAAATTATCTACCATCTATATAAATGTAGGCAATGATAGAAAGTCTTATAACCTGAAATAGAGGTAGTAATAACATATGACGAATANATCAATACCTACGACAATATAATATGATCTACGAGAATACATCAATACACTACAAATATATATCAAAAAGCAAATATGAGAATACAATCTCGCCGCCCCACACTGTCATTCCTATGTATACATGTACAACCCAGAACTCCACAAAGTAGGGGAAGAATAGGCATCTACATTANGGTAAGCCGGTTCACCAAATCTCTTCTCCTCTTGTGACA | |||||||||
gi|29635088|gb|CB640097.1|CB640097 OSJNEa13D23.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa13D23 5', mRNA sequence TCAGGTTATAAGACTTTCTAT |