miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCAGTGCAATCCCTTTGGAAT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|29645391|gb|CB650398.1|CB650398 OSJNEb14N03.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb14N03 3', mRNA sequence

TCAGTGCAATCCCTTTGGAAT
||||||||||| |.|||.| .
AGTCACGTTAGCGGAACTTGG

EST sequence (targeted fragment marked with yellow):
AATGCCCGTAATGATTGCTCCCAGTGCCATGCAGAAGATGGCTCACCCTGACGGAGAGTATGCAACTGCCATGGCAGCTTCAGCAGGAGGAACTATAATGACAGTCATCTTGGGCTACTTCAAGTGTTGAGGAGGTCGCCTCAACTGGGCCTTGAATCTGTTTCTTCCAGCTATATATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAAGACCCGAGAGAGCTGGGTTCAAGGCGATTGCACTGACCGTGGACACTCCGTGGCTGGGACGTAGGGAGGCTGACATCAAGAACAGGTTTATATACTAATAGAACGGTGATTCCAAACAATGCTTGCTACCACTTGGTTCCTTGCATAATTTTCAGGCGGCTAGACTTCAATTATGGGTAATGCGCCTCGGTTGAGCCCATAGTCTGGCGTAGAACTATTGCCACCAATGTGTATATACAATCTTTTTAGAAAATGAGATAAACCTGGCCTCTACATCCAACCGAATGTACACGACCAAATGTGTATGTACAGTCTACCAGCCTCTGTAGTCGTATTGATTTTGAAATTGTCTTATGCTATATCCGATGTATGTGCCTGTTTAATTATACTAGCATTGTTGTACATGACCAACCATATGTACATTAGAAAGTACGAACAAGATGTGCACAGGATCCTTATCGTCGCGTTTGACTATAGCTTTGTCAAAAAAGG



gi|87009563|gb|CI309084.1|CI309084 CI309084 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou

TCAGTGCAATCCCTTTGGAAT
.|||.|||||||| .|||| |
GGTCGCGTTAGGGCGACCTCA

EST sequence (targeted fragment marked with yellow):
GATGTATACCAATTCAAGTTCTTTGCAGAGCTTTGCCGAAACAAGATTGGAGAGAATGACTCTGTGATTGTGATGACACATGAGCCAAACTGGCTTCTTGATTGGTATTGGAAGGAGACTACTGGCAAGAATGTTTCACATTTAATCCAGGACTACTTGAATGGAAGATGCAAACTTCGTTTGGCCGGGGATTTACACCATTTTATGAGGCATTCAGCTAATCAGATAGACAACCCTACTTCTGTGCAACACTTGCTTGTCAATGGATGCGGTGGTGCATTTTTGCACCCAACACATGTTTTCAAAAACTTTGAGCAGTTCTCTGGAGCTACTTATGAGTGCAAGGCTGCGTATCCATCCTTCGATGACTCCAGCGGGATTGCGCTGGGTAATATACTAAAGTTCCGCAAGAAGAATTGGCAGTTTGACACAATTGGTGGTTTTATCTACTTCATACTGGT



gi|38476325|gb|CF960458.1|CF960458 13786rsiced_4266.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic

TCAGTGCAATCCCTTTGGAAT
||||||||||| |.|||.| .
AGTCACGTTAGCGGAACTTGG

EST sequence (targeted fragment marked with yellow):
CCGGGCTGCAGGCAAGTGTTGAGGAGGTCGCCTCAACTGGGCCTTGAATCTGTTTCTTCCAGCCATATATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAAGAGCCGAGAGAGCTGGGTTCAAGGCGATTGCACTGACCGTGGACACTCCGTGGCTGGGACGTAGGGAGGCTGACATCAAGAACAGGTTTATATACTAATAGAACGGTGATTCCAAACAATGCTTGCTACCACTTGGTTCCTTGCATAATTTTCAGGCGGCTAGACTTCAATTATGGGTAATGCGCCTCGGTTGAGCCCATAGTCTGGCGTAGAACTATTGCCACCAATGTGTATATACAATCTTTTTAGAAAATGAGATAAACCTGGCCTCTACATCCAACCGAATGTACACGACCAAATGTGTATGTACAGTCTACCAGCCTCTGTAGTCGTATTGATTTTGAAATTGTCTTATGCTATATCCGATGTATGTGCCTGTTTAATTATACTAGCATTGTTGTACATGACCAACCATATGTACATTAGAAAGTACGAACAAGATGTGCACAT



gi|117247708|gb|CT856913.1|CT856913 CT856913 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCAGTGCAATCCCTTTGGAAT
|||||||| ||||||...||
AGTCACGTCAGGGAAGTTTTT

EST sequence (targeted fragment marked with yellow):
AAATCCTACTCGTTCCTAATTCAGATGCAGTGTTGGCGCGGCTAGCAGGCAACGGTGATCCTGTGCGGCAAGGGACGAGCAAAGTTTGTGGGCAGCAGGATGAAACAATAGTGGCCTTGTGCACTGATAGTATTTTTGAAGGGACTGCACTGATATGATAGTATTGATATTGTGATACGACGCCAGTACGCCACGAGATAGATTAAAATCCAGATATCTGCATCTTAAAATCCAGATATCTGCATCGTGGGTGTTGCCGTGCACCCTCTGATTCTTTGATTCTGTCATCTAAATTGTAAAAAGCGGCTACATATCCCTCCATTTCTTTCCTCTCTGTACACTTGTAAGCATCCAAAATACAAAGGTTTGGCCTATTGCGTTGTCAAATTGAGAAATTAGTCAACTCTACAATTTGAAATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCAAGGGGGGGCCCGGTACCCAACCCCATCTCCCCTTTCCCAACATTTTGCACCACCCTGGATTGGCGAAAGGGGACGCCGCCCTGGGAACGGGCGCCTTTAAGCCGCCGGGGGGGGGTGGGTGGTTTACCCCCCACTGCTAGACCACCAACAATTTGCCAAACGCCCGTAACCCCCCGCCCCCATTTCCCTTTTTTTTCCCCTTTTCGTTTTCTCTCGCGGGTTTGGCGGGGTTTTTTTCCTGATCAAACTTTAAAAAAAACGGGGGGCGCCCCTATAAGGGGTGACGCGAAAGTTTAGGGCTTTTTATCCGGACCCCTCCAGGCCCCCCCAAAAAATATGTTAAGAAATAAGGGGGAAGGGGGCTCCCGCGATTGGGGGGGAGCATAGCCCTGGGCGTGGATAAAAAAGGGGTTTTTTCTCCCCCCCCCCTTGTAAAACTGTAGGGGGGATATTTACGTACTTGATTTGTTTGAGCATAAGGGCGTACACTCCTCCGTGATTTTCACAAATAATAGGGAAGGAAAGAAGAAACACCACTCTCACGACGAGCCCCGTGTGCCAGGGCGCGCGGGGCCGGGAGCAACACGCATTGCTGGTATGTGGAATGTATTTTTATAAAATCTGGAAGGGAAGGGTGACGTTATAATTTTTGTTCCACACTTCGCCCTCCCGTATAATGAATTTGT



gi|88301016|gb|CI592196.1|CI592196 CI592196 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TCAGTGCAATCCCTTTGGAAT
|||||| |||| ||| ||||.
AGTCACATTAGCGAACCCTTG

EST sequence (targeted fragment marked with yellow):
GTCCAATCCCATCCCCAGTGTTCAGTGACCATGGCAACCAGTTATTGCTCCATCTCCAATCCTCCATTATCCAAAACTTCCTTTCCCAATAAACAGGTCCCAGGTTGGGTACTTCGAGCAATCAGCAAAGGCAAGGGCAACTACACTGGTGGTATTTATACTACAACAAAGAGGAATTTAAGAACTGGGTTCCATGTTTGTGCCGTCAATGGAGGTCAGGGCACTCGCAATGTGTCTGGGGCAGAGTTCCCAAGCGATTACACTGAACTTCTAGCGCAGGGATGGAGGGAGTAGAATAATCGAATGACTAATTCACTATACATGTAGTGATTTCAGGCAAAAGAAGCTGCTGAGTCAGCTTTTAAGGATGGGAAGCAGCTATTGGTAAAGCCTTAATCTGTCCACCTGT



gi|29671968|gb|CB668243.1|CB668243 OSJNEd16A05.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd16A05 3', mRNA sequence

TCAGTGCAATCCCTTTGGAAT
||||||||||| |.|||.| .
AGTCACGTTAGCGGAACTTGG

EST sequence (targeted fragment marked with yellow):
AGCTCCTAGACCTAGTGGATGAGTCCCGCAGCTGTTTTGTCCCCGCATCGTGATCGATGTCTTGAAGATCGACATGTCCGCAATTGTTCTTGGGTTCGAGATATCAATGCCCGTAATGATTGCTCCCAGTGCCATGCAGAAGATGGCTCACCCTGACGGAGAGTATGCAACTGCCATGGCAGCTTCAGCAGGAGGAACTATAATGACAGTCATCTTGGGCTACTTCAAGTGTTGAGGAGGTCGCCTCAACTGGGCCTTGAATCTGTTTCTTCCAGCTATATATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAAGAGCCGAGAGAGCTGGGTTCAAGGCGATTGCACTGACCGTGGACACTCCGTGGTTGGGACGTAGGGAGGCTGACATCAAGAACAGGTTTATATAGTAATAGAACGGTGATTCCAAACAATGCTTGCTACCACTTGGTTCCTTGCATAATTTTCAGGCGGCTAGACTTCAATTATGGGTAATGCGCCTCGGTTGAGCCCATAGTTTGGCGTAGAACTATTGCCACCAATGTGTATATTCAATCTTTTTAGAAAATGAGATAATCCTGGCCTCTACATCCAACCGAATGTACACGACCAAATGTGTATGTACAGTCTACCAGCCTGTGTAGTCGTATTGATTTTGAAATTGTCTTATGCTATATCCGATGTATGTGCCTGTTTAATTATCATAGCATTGTTGTACATGACCAACCATATGTACATTAGAAAGTACGAACAAGATGTGCACATTATCCTTAAAAAAAGGGAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC



gi|33681964|gb|CF310203.1|CF310203 ABF--04-L18.b1 ABF3-overexpressing transgenic rice plasmid cDNA library (ABF) Oryza sativa Ja

TCAGTGCAATCCCTTTGGAAT
||||||||||| |.|||.| .
AGTCACGTTAGCGGAACTTGG

EST sequence (targeted fragment marked with yellow):
ATCTGGTTCAGTCACAGATCACATGCACGATGCTGATCCTGCCACTTGCCCTGGTGGACGCGGTCGTCTTTGCGGCCGCGCACTGCTTCACTAAGCATATGCGCAAGCTGCAGTGTGCTACCGTCACCGTCCGCGCGCGGTGCCAGGCCGATGGCCGCCTCACCTTCTGACAGCTCCTCGACCTCGTGGATGAGTCCCGCAGCTGTTTTGTCCCCGCATCCTGATCGATGTCTCGAAGATCGACATGTCCGCAATTGTTCTTGGGTTCGAGATATCAATGCCCGTAATGATTGCTCCCAGTGCCATGCAGAAGATGGCTCACCCTGACGGAGAGTATGCAACTGCCATGGCAGCTTCAGCAGGAGGAACTATAATGACAGTCATCTTGGGCTACTTCAAGTGTTGAGGAGGTCGCCTCAACTGGGCCTTGAATCTGTTTCTTCCAGCTATATATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAAGAGCCGAGAGAGCTGGGTTCAAGGCGATTGCACTGACCGTGGACACTCCGTGGC



gi|29642594|gb|CB647601.1|CB647601 OSJNEb10J14.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb10J14 5', mRNA sequence

TCAGTGCAATCCCTTTGGAAT
||||||||||| |.|||.| .
AGTCACGTTAGCGGAACTTGG

EST sequence (targeted fragment marked with yellow):
GGATTTGGTTTCTTACACTATTAATCAATCAGGGTGACATTTCAATCGCTGTTCCACACAAATATGCTAATGAGGATGTATCATTAGGAGCTTCGCTTATCGGTCTAGATGTCAGTCCAACACATCGGCGATGTAGGCTTTGCTGTGGTACTCAACCAGTCACAGATTTTACAGAAGTGCTCTGGTTCAGTCACAGATCACATGCACGATGCTGATCCTGCCACTTGCCCTGGTGGACGCGGTCGTCTTTGCGGCCGCGCACTGCTTCACTAAGCATATGCGCAAGCTGCAGTGTGCTACCGTCACCGTCCGCGCGCGGTGCCAGGCCGATGGCCGCCTCACCTTCTGACAGCTCCTCGACCTCGTGGATGAGTCCCGCAGCTGTTTTGTCCCCGCATCCTGATCGATGTCTCGAAGATCGACATGTCCGCAATTGTTCTTGGGTTCGAGATATCAATGCCCGTAATGATTGCTCCCAGTGCCATGCAGAAGATGGCTCACCCTGACGGAGAGTATGCAACTGCCATGGCAGCTTCAGCAGGAGGAACTATAATGACAGTCATCTTGGGCTACTTCAAGTGTTGAGGAGGTCGCCTCAACTGGGCCTTGAATCTGTTTCTTCCAGCTATATATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAAGAGCCGAGAGAGCTGGGTTCAAGGCGATTGCACTGACCGTGGACACTCCGTGGCTGGGACGTANGGAGGCTGACATCAAGAACAGGTTTATATACTAATAGAACGGTGATTCCAAACAATGCTTGCTACCACTTGGTTCCTTGCATAATTT



gi|117252594|gb|CT851022.1|CT851022 CT851022 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCAGTGCAATCCCTTTGGAAT
.|||.||||||| ||||.| |
GGTCGCGTTAGGTAAACTTAA

EST sequence (targeted fragment marked with yellow):
ACACCTTCTGAGTGTCTATTTTTTTTCGTTTGTTATGTTTTTTGTAATAATCAATGGGAAGTTTTGTGTCGACTGGCTCAATACGAGTGTCCAAATCAGTTGTGTTCAAATCGAGATCTTCAGAGTCTTATCAAAAAACCGAAATTGACTGCCTTTCTTCGGTCAAGGGGAGCACAAGAGAAATCCCACTGGCTAATTCATATATTTCGAGTCGTTCAGAAACCTTACCTCGTCTGGTGGATTTATTAGAGTCACCCTCTACTATAGTGCCCAATGGAATTAATTGGACGAGCGGTAATGATTCTGATAACCAAGGCATAGTATGCCAGCAAAGCGCAATCAATAAGTTAATCGAACTTTTGCGTTCGCCATCCACGAATGTTCAACGAAATGCCGCCAAAGCATTGACAAATGTAGCCAATAACTCTGAAAATCGCGTAACCATAGCCCAAACTAATGCCATTCAAGTTTTGATAGAATTATTAAATTCTCCATCACCAGAAGTTCAAGACAGTGTTGTAACAGCTTTGTGGAACATAGCACGAGAATATAACAACAAAGTAATAATCGTACGAGAAGGAGCTCTTCCAAATTTGATGAAACTGCTAACTTCACAATCGGACAGAGTAAAAGGGAATACATTGATTACGATTATTAGTGTGGCTCATGCAAAAGAAAACTTAATCGAACTATGCGAGTCTGGGTTGTTGCAGCGTTTGTTGGATATGGCGGAAATCGAAAAACTGGAAATTAAACGAAATGTAACGAGAACTATTTAGTGATATCCGGATTCATTGAAAGTAGTGCATATCTAGTTAAAGTTTGGCGCGATATCAACGTTTGTAAAATTATTATCTTCTTTCTCTACCGGAATTCAAATGGATTGCGCTGGTGTTTTATGGAATATATCGAAATCTAACGAAAATAAAAATATTGTACCAAATTCAGAGGCTTGTCCTCTCCTTGGAAATTTTTTATCCTCTTCTTTCTTTTATGTGCCGAAAAATGCATTTGGTGGCTTTTGTTAACATTTGTTTGTTTCCTCCAAAAAAAAAAAAAAAAAAACTTGCAGGGGGGGGGGCCCCCGCC



gi|58610760|gb|CK038472.1|CK038472 40565rsiceg_9167.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cD

TCAGTGCAATCCCTTTGGAAT
|||||| |||| ||| ||||.
AGTCACATTAGCGAACCCTTG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCACCAATCCCATCCCCAGTGTTCAGTGACCATGGCAACCAGTTATTGCTCCATCTCCAGTCCTCCATTATCCAAAACTTCCTTTTCCAATAAACAGGTCCCAGGTTGGGTACTTCGAGCAATCAGCAAAGGCAAGGGCAACTACACTGGTGGTATTTATACTACAACAAAGAGGAATTTAAGAACTGGGTTCCATGTTTGTGCCGTCGATGGAGGTCAGGGCACTCGCAATGTGTCTGGGGCAGAGTTCCCAAGCGATTACACTGAACTTCTAGCGCAGTGATTTCAGGCAAAAGAAGCTGCTGAGTCAGCTTTTAAGGATGGGAAGCAGCTATTGGTAAGCCTTAATCTGTCCACTGTCTGACTTATTTTTTTATTCCTTTTTTTGCACAAGAAATTGTGATGCAATGTATTTCAGGAAATTGAGTTCCCTACAGCAGGACTACAATCTGTACCAGGTTCTACATAGCTAACCTTTATGTATATTACCTTGTCATAAGATATTGGTCAGGACTCAGGTGGAAAGGATACCATATAAGATTCTATTTTACTTTTAGGTGACAGTGACGGTGG



gi|117251477|gb|CT844182.1|CT844182 CT844182 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCAGTGCAATCCCTTTGGAAT
|||||| ||||||||| .| |
AGTCACATTAGGGAAAATTAA

EST sequence (targeted fragment marked with yellow):
CTCCCCTCCGTCTGCAGGGAGCCAGACACACGGGGTCGCGCCCTCACGTGCCTCGCGCCGTGCGGCCCCCATCGCCGTCCTCATCCTGATCCTAATCCCAAGCGACCGCGGCGCGATCACGCGGCGACCAAACATCTCTCGTCGACGAGACGACGTGCCCGCCGCTCGCCACCCCCCCCCCCCCCCCCACCCGCTCGCGTCGGCATAAATACAGCACGCCACGCCCATCCCTCTCACTCTCACCAACAACAGTAACCCAACCGGAGAGCTTGCGGAAGCGGCGGTTGGGTGCGGGCGCGCGCGTGTGAGGGGGGAGAGAAGGCCAGGAGGAGGCGACGCCGTCGCCCGAGGGAGGCAAAAATCCGATCCTCCTCCTGCCCTGCTCGCTCGCTCGCTCGCCTGCGCTGCGCGCACTTGGCCCCGTCCCGTCCGTTCCCGCTCGCCAGGCATAGAAAGATGGTGCTCTGGGTCTTCGGCTATGGCTCCCTGATCTGGAACCCCGGATTCGACTTCGATGAGAAGATCCTGGGCTTCGTCAAGGGCTACAAACGCACCTTCAATCTTGCTTGCATTGACCATCGGGGCACGCCGGAGCATCCTGCGAGGACCTGCACACTTGAGTCCGACGAGGAAGCCATATGCTGGGGGATTGCATACTGTGTCAAAGGGGGGCTTAAAAAGGAGCAAGAAGCAATGAAGTACTTGGAAAGAAGAGAGTGTGAGTATGACCAGAAGATCTCTGTGGATTTCTACAAGGAAGGAGATTCTTTGAAGCCAGCTGTGACAGGTGTACTAGTCTTTGTATCCACTCCTGATCCAGTAGGCAACAAATACTATCTTGGGCCTGCTCCTTTGGAGGACATGGCAAGGCAAATTGCTACAGCCAATGGCCCCAATGGGAATAACAGGGATTACCTGTTCTCAATGGAGAAGGCATTGTCCAACATATGCCATGAAGATGATTCAATCATCGAGCTAGCTAACGAGGTCAGGAAGGTGTTGAGCCGGCCGAAGGAAAAGATCACTGGCTCCGATAGCCCACAAAAATCTCACGCTCTCGTACACCTGTCTGCGCTTCCTGAGGGCACTGTGTGGACTCAAGATAGCAAGCTCGGCGGTGGAAGAGATGAGATCTCCTCTGACCTACTCACTCTTGACGCTGGATTGAACGAGTTTAACGGTTCTGCTTCGAGCTCCCTGGCACACTGGGGGACCAGAAATGGGCTGATTTTTCTTTCCAACCCGCTGGCGGAATGCTGTAACCTTTAATTTTTGGTTATACTAGAAACCCAAGACTGGGGGTGGTTGCTTGGTTTCCTTTTTCCCCCCTATAATAATTAAAAGGGATTACACTGAAGCCTTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA



gi|117211573|gb|CT851645.1|CT851645 CT851645 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCAGTGCAATCCCTTTGGAAT
|||||| |||| ||| ||||.
AGTCACATTAGCGAACCCTTG

EST sequence (targeted fragment marked with yellow):
ATTTCTACATTACCACATAGCCTTCTTTGTTTCTCCCTCCCTCCCTCTCCAACACACCAATCCCATCCCCAGTGTTCAGTGACCATGGCAACCAGTTATTGCTCCATCTCCAATCCTCCATTATCCAAAACTTCCTTTCCCAATAAACAGGTCCCAGGTTGGGTACTTCGAGCAATCAGCAAAGGCAAGGGCAACTACACTGGTGGTATTTATACTACAACAAAGAGGAATTTAAGAACTGGGTTCCATGTTTGTGCCGTCAATGGAGGTCAGGGCACTCGCAATGTGTCTGGGGCAGAGTTCCCAAGCGATTACACTGAACTTCTAGCGCAGGCAAAAGAAGCTGCTGAGTCAGCTTTTAAGGATGGGAAGCAGCTATTGGTAAAGCCTTAATCTGTCCACTGTCTGACTTATTTTTTTATTCCTTTTTTTGCACAAGAAATTGTGATGCAATGTATTTCAGGAAATTGAGTTCCCTACAGCAGGACTACAATCTGTACCAGGTTCTACATAGCTAACCTTTATGTATATTACCTTGTTATAAGATATTGGTCAGGACTCAGGTGGAAAGGATACCATATAAGATTCTATTTTACTTTTAGGTGACAGTGAAGGTGGAATTGAGATGACTGGAAGCATGCTTCTTATAAGAGAATTCTGTGATCGCTTTGTCCCTGCTGAGAAAGCTACAAGAACCAGAATCGTATGTTCTGACCATTTTCTAGTAACTAGTACTACAGGCTAATCTGTAAATGTAATCCTGACTCTCATTTATAAACAAGAAAAAAAACAAAATTTGTACATGGAATAACCACTGGGCAGTTTTTCTACCATTAGATTGAAAGCACAAAACCATGGGTGCTGAAAATTAAAACTTGGAAAATGGCCCTGGCTTGATTTCCATTTTTTATTTATCCTGAACATGGTTTCCATTTTTTTTCCCCTGAAGGCAAAAATAAAAGTTTTTCCTTTTTGCAAAAAAAAAAAATCCTGCCCCTTTTTAAAAGGGGAAGTTTTCCCCCCGAAAAAACCTAAAAATTAATCTTAAAAAAAAAAAAACCCATTCCCCCCTATATTTTTAAAAAAAAATTTTTTGGGGTTTTTTTTCAAAAAAAAAAAAAAGGGGGGCAAAAAAAAAAAAGTGTGTCTCAAAAAAAAAACCCCGGGGGGGGGGGGGGGGGGCCGCCTCCCCCCCAAACAAAAAAAAAGAAACAACAAACACAAAACAA



gi|88367376|gb|CI566342.1|CI566342 CI566342 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TCAGTGCAATCCCTTTGGAAT
|||||| |||| ||| ||||.
AGTCACATTAGCGAACCCTTG

EST sequence (targeted fragment marked with yellow):
GAAACATTTCTACATTACCACATAGCCTTCTTTGTTTCTCCCTCCCTCCCTCTCCAACACACCAATCCCATCCCCAGTGTTCAGTGACCATGGCAACCAGTTATTGCTCCATCTCCAATCCTCCATTATCCAAAACTTCCTTTCCCAATAAACAGGTCCCAGGTTGGGTACTTCGAGCAATCAGCAAAGGCAAGGGCAACTACACTGGTGGTATTTATACTACAACAAAGAGGAATTTAAGAACTGGGTTCCATGTTTGTGCCGTCAATGGAGGTCAGGGCACTCGCAATGTGTCTGGGGCAGAGTTCCCAAGCGATTACACTGAACTTCTAGCGCAGTGATTTCAGGCCAAAAGAAGCTGCTGAGTCAGCTTTTAAGGATGGGAAGCAGCTATTGGTAAAGCCTTAATCTGTCCGCTGTCTGACTTATTTTTTTATTCCTTTTTTTGCACAAGAAATTGTGATGCAATGTATTTCAGGAAATTGAGTTCCTAAGC