| mature miRNA: TCATAAGCCCACCACATGTGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88674312|gb|CI728425.1|CI728425 CI728425 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): GGATGAGGAAGATTCTGATAAACAGACATCATATGCACAGAAGGAATCTTTGGATAAGTTACCCAAGGGAAGTGACATCCGTCATATCCCTGCAAGGTCTAAATCTGGTGGGCTTGTGGATTATGACGACGATGATGAGGGTTACAACCCACCTCCCAAAAGGGCTGTTAAAGCTGATGAGGATGATGAGGCCTTAGTCATAAAGCGTAATCCAGTGGATGACAAACAAGCTGATGGGAGGTCTCCCAAAAAAACCAAAGATGGAACCCAGATTTATCTGCTCAAAGATTGTCGCTGCGGCTAGTGTGGCAGGCAGACGCTCGAATTTGGCAGATAAACAGGGTCCCCATCCACCTTCCTCAAGCANGAAAACTT | |||||||||
gi|87039577|gb|CI194199.1|CI194199 CI194199 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): ACATTCAAATGCTACAACAGCGTATGATCAAGCCACGTGGGGAAAAAAATGTGTAACAATTACACAAGAGATATTAGACCTCTTCACACTTTTTTTTTAATACTCCATTTGATTGTTTCTCATTAAGCCTTGTTCTGCTTTGTTTTGGCAATGCTAAGAAGATCTCCAAACAGCTTGTCCTCAGGCTTCGATGGTTGCCCCATGGAAGATGATGATGAAGGTGTTGTAGAGTAGGGCGAGCTGTTCATCCCCATGTAAGAGCTGTCTTGCATGGAGAGGCCATACATTTTCTGGGAGAGGTCATTCATACCAGCGTAGTATGTTGGCCTCCCTTGGCTGTTGCTGTAGTATTGTGCCGCTTGCTGCTGCACAAGCCGGTACTGGGACATCTGGGGGCCATACATTCGTGGTTGCGGCATGGCTGCAAACTGCATACCCGGCATCATCATCGGTTGCGCATACATCATGACTGGCTGCGCTCCTGGCATCGGCGAAGGTTGCATCCCGGGGAATTGCATTCCTGGCATGGAGTGTGGTGGCATCGAACCGAATTGGTTCGCAAAGCCTGATTGCATCTGGGTTACAGCAGGTTGGCTGGGTTGCATGGCTCCCGGTTGTTGGTTGTTGTACATTTGGTGGGCTTGTGGACC | |||||||||
gi|58585826|gb|CF984134.1|CF984134 16785rsicee_14382.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa In TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): GACGAGGGTTAATGGAGAGTGGTGAAACAACACAAAGTATTAGTCTAGTTGACATGAGAAGGAAGCCAGAAGAAAGAGGTCTCGACAAAGAAGAGGAGGACTATTTCAACAAGGGCAGTGATGAGGAAGATTCTGATAAACAGACATCATGTGCACAGAAGGAATCTTTGGATAAGTTACCCAAGGGAAGTGACATCCGTCATAGGCCTGCAAGGTCTAAATCTGGTGGGCTTGTGGATTATGACGACGATGATGAGGGTTACAACCCACCTCCCAAAAGGGCTGTTAAAGCTGATGAGGATGATGAGGCCTTAGTCATAAAGCGTAATCCAGTGGATGACAAACAAGCTGATGGGAGGTCTCCCAAAAAACCAAAGATGGAACCCAGATTTATCTGCTCAAAGATTGTCGCTGCGGCTAGTGTGGCAGGCAGACGCTCGAATTCGGCAGATAAACAGGGTCCCCATCC | |||||||||
gi|117246013|gb|CT856538.1|CT856538 CT856538 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): AACCCTCCCTCCCGAAAGCAGCCGCGTTCCTCCACTATAAGAGAGAGAGAGACAGACCCACCATCACCACCACCATAAAAAAACACCAGGAGGAGGAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGTTCAGCAGCTCCACTTGCTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAAGCCCACATGTGGTGAGCTTATGATGACGACCACAGTTTGTTAAGCATGCGAGCCGCATGCGGCAGATCATGTGATTCATTTTCTGTTGTGGGATGTATTATATATTATCGTATACCTATATTTCTCACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGGGGGGGGCCGGGGCCCCAATTCCCCCCTAAAGGGGGGGGTTTGGTGCGGGGCCCATGGGCCCCCCCTTTTTAGGGGGGGGGGGGCGGGGGGAAAACCCCGGGGGGTTGCCCAATTTTTATATCGCCTTTGGCAGACAACACCCCCCCTTTTTCCCCACCTGTGGGGGATAAAGAAGAAAAAAAGAGCCCCGCCCCCCCTCACCGCCCCCTTTCGCCAAAAAATTTTGACCCAACACTTAAAAAAGGGGGGAAGTGGGGGGACCCCCCCCCCTGAGAAAGTGGGGCCCCCATAAAATAGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTCTGGCTGGGGGAGGGGGGGGTTAAGGAGAGGAAAACGCTGTGGTGGGGGGGGGGGGGGCCGTACTTAAAACTCCCCCCCCCCCCCGTCC | |||||||||
gi|88669037|gb|CI719994.1|CI719994 CI719994 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): GGATGAGGAAGATTCTGATAAACAGACATCATATGCACAGAAGGAATCTTTGGATAACTTACCCAAGGGAAGTGACATCCGTCATATCCCTGCAAGGTCTAAATCTGGTGGGCTTGTGGATTATGACGACGATGATGAGGGTTACAANCCACCTCCCAAAAGGGCCTGTTAAAGCTGATGAGGATGATGAGGCCTCACTCATAAAGCGTAATCCACTGGATGACAAACAAGCTGATGGGAGGTCTCCCAAAAAAACCAAAGATGGAACCCAGATTTATCTGCTCAAAGATTGTCGCTGCGGCTAGTGTGGCAGGCAGACGCTCGAATTTGGCAGATAAACAGGGTCCCCATCCACCTTCCTCAA | |||||||||
gi|88330776|gb|CI636785.1|CI636785 CI636785 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): TTGGGGATAGGTACAACATGCTACATTCTGTTGTCCTTGAACTGTTGGAATACATACGAAAGGAAAATCTCAATTCACTTGTGATACATGTTACCAAATCCTTTTGGGACCAACTTGTGAGGTTCGAAAAACTAGGGAGCATTCAGGCCTTTAAACTCAAGTATCAACAGTTAATGGAGAGTGGTGAAACAACACAAAGTATTAGTCTAGTTGACATGAGAAAGAAGCCAGAAGAAAGAGGTCTCGACAAAGAAGAGGAGGACTATTTCAACAAGGGCAGTGATGAGGAAGATTCTGATAAACAGACATCATATGCACAGAAGGAATCTTTGGATAAGTTACCCAAGGGAAGTGACATCCGTCATATCCCTGCAAGGTCTAAATCTGGTGGGCTTGTGGAT | |||||||||
gi|88198508|gb|CI198358.1|CI198358 CI198358 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): ACATTCAAATGCTACAACAGCGTATGATCAAGCCACGTGGGGAAAAAAATGTGTAACAATTACACAAGAGATATTAGACCTCTTCACACTTTTTTTTTAATACTCCATTTGATTGTTTCTCATTAAGCCTTGTTCTGCTTTGTTTTGGCAATGCTAAGAAGATCTCCAAACAGCTTGTCCTCAGGCTTCGATGGTTGCCCCATGGGAAGATGATGATGAAGGTGTTGTAGAGTAGGGCGAGCTGTTCATCCCCATGTAAGAGCTGTCTTGCATGGAGAGGCCATACATTTTCTGGGAGAGGTCATTCATACCAGCGTAGTATGTTGGCCTCCCTTGGCTGTTGCTGTAGTATTGTGCCGCTTGCTGCTGCACAAGCCGGTACTGGGACATCTGGGGGCCATACATTCGTGGTTGCGGCATGGCTGCAAACTGCATACCCGGCATCATCATCGGTTGCGCATACATCATGACTGGCTGCGCTCCTGGCATCGGCGAAGGTTGCATCCCGGGGAATTGCATTCCTGGCATGGAGTGTGGTGGCATCGAACCGAATTGGTTCGCAAAGCCTGATTGCATCTGGGTTACAGCAGGTTGGCTGGGTTGCATGGCTCCCGGTTGTTGGTTGTTGTACATTTGGTGGGCTTGTGGAA | |||||||||
gi|88978811|gb|CI385152.1|CI385152 CI385152 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TCATAAGCCCACCACATGTGG EST sequence (targeted fragment marked with yellow): GAACAAAATGAGATTTTTTTTTGAGTGAAGAATATAGGTATACGATAATATATAATACATTCCACAACAGAAAATGAATCACACGATCTGCCGCATGCGGCTCGCATGCTTAACAAACTGTGGTCGTCATCGTAAGCTCACCACATGTGGTGGGCTTATGATGGCAACCATAGTGAATATTGAACAAGTTGGCAACTCACGAGCCATCCTCTGTGTCCTTGATGTCCATCTTTGTTGAGCACCTTGACTGCAACAGGTAGTGACTTCAGACCAACCCTGACATTCTCATCTATGTAGCCCTTGTAAACAGTCACAAACCCTCCTTCACCAAGAAGGTAGTCAGCACGGAAGCTTTTTGTGATGGTCTCAAGTTCAAACAATAAGTCAATCACATCGTTGTATATGGAGATGTTCTTGGCATCTTCAACTTCAATTTTCCTAGGTGTTGAAGG | |||||||||