miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCAGGTTCGTAGCTAGGATT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|117221072|gb|CT852649.1|CT852649 CT852649 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCAGGTTCGTAGCTAGGATT
|||||||| ||||| ||.|||
AGGTCCAACCATCGTTCTTAA

EST sequence (targeted fragment marked with yellow):
ACTAAAATTTCGAATTTACAAATGACTACCTCATTCTCCTTTCTTTTTTTCCTTTTTCCTTGTGGCAGACCGGTTCCTGAAAGAATATTCTTTTCATGAAATGTACTTCCGGTTTTTTAAATAGAATGATTAAATTACAGTAGGATGAATAACTAAATTTGTCGATATGCCGAGCACCGGTACTCCTTGTTAGTTCTTAGTGAATCTATGTATACTATTGCTTGTCAAATTGTGAATTTTACTATCAGCTGTATGTATGTCTATTGAAGAACTCTCAACAGTTCTAACTTCCTAAGATGTTTTAATCAATTCTTGCTACCAACCTGGATACAGTATTCTCCGTAGTTTTTTCTTCATTTTTTTTAAAGAGATCTATTGAGAGTCCTTGGTACCCATCTTCTGTAGAATTGTCCATGTGAACAGTTGCTTCAAGATTTCTGCTGCATCTGTGATACGGTATCACTGATACTGTAGTGATCAGATCCAAAACACATATATAGTTCGCCACCATTCTAAAACACATGTTTGTGTGATCAGATCTAGCTCGCCACCATATATAGTTCAGGTTTTCAAGTTGTAATATCACTTGCCTTTTGCGATAGATATGACAACACACTTTGTGTCAGGCTGTCCCAATTTTCTCTGAATTTTCTCTCATATATCATGATTTAGTTATGGCTTTTGTTCCTTGACATTTCAATGTCTAATTGTCCAATGTTAAAGCAATCCTTTTCATAGCCTGATTTATTGAATACTTGCAGGTACTTGAATAACTTGAAGGTTCCTAGGAACCTTCATT



gi|58692240|gb|CK080927.1|CK080927 86062rsicen_5439.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indic

TCCAGGTTCGTAGCTAGGATT
||||||||||||| |||||||
AGGTCCAAGCATCAATCCTAA

EST sequence (targeted fragment marked with yellow):
CAAGAAGTCAGGTATTTTTTTTCCTATCATACAAAGACAACCTGTTATCTTATCATAATAACATACCCCATCCGTCCCAAAAAAAAAAGTCCAATCCTAACTACGAACCTGGATACATGTGTGTCCAGATTTGTAGCTAGAATTTGCTTCTTTTTTTTGGGACAAAGTAGTAGTTAGCAATCATTGGAATGTGTTTATCTAGTTAAAATAGATGGCCACGTGTTGGTATTGCTAATGCATCCGGATGTATACCCATGTGCTGCAAAATCTCTGCCATGATACTGGGCAACTGTTTATTATTTGCATGCACATCGGCCTTTTTCTCAGAATAGGTCTGAAATCTATTAAACCCTGTTTCATCAGTTCTGGAATCATACTATGTTGTAACGCTGGATGCTAATACAATTTTGGATTTGAATGGGTACAAATGTTTGTAAATTACCTTTCTTTTTGCAGAACTTTGCACTCTGCATCAATTCATTGGATAGAATTAGTTTGCTGAACTCACCAATATTCTTCTTTGTCCTAGATTTCAAATTGGTTCATAAATGCCCGTGTCCGCCTGTGGAAACCGATGATCGAAGACATGTATAAAGAAGAGATTGGGGAGGCGGATCTCGACTCG



gi|29679505|gb|CB675780.1|CB675780 OSJNEe11L10.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe11L10 3', mRNA sequence

TCCAGGTTCGTAGCTAGGATT
|||||||||||||||||||||
AGGTCCAAGCATCGATCCTAA

EST sequence (targeted fragment marked with yellow):
AAGACTTTTACGGAGAGGAGCTGCGCCTTGTTATTGTTGGTTACATACGACCCGAGGCCAACTTTCCTTCACTTGAGAGCTTGATAGAGAGGATTCACGAGGATGCAAGGATATCAGATAAGGCCCTGAATTTACCATTATACGCCAAGTATAAAGACTCGCCGTACCTAAGAAATTCCTTGAAGGAGGACAATTCTGCTAACGGGAACCAGTCAGTGATAGATTCCAAGTGATTCAACGTTGTGAAGTGAAAGACATGAAGAATTCTCTTTCGCAGCGTTGTTGATGCAGAAAGAGCACTACTGTTCTTGTGCTTGTACTGCTGCATTATGTTCCATGAATACTTGGAACATGCTCTTGACTACAATGAGAATACCAGTAAGGGTCTATGTTCGTCAGAAAGTTGAGTTAGAAGCAGCCAACTACTATCTTCTCAAATGGTCACCTACTCCTAGAATGGAATGCACAAGATGTCTGAAAATTTGCACGTGTGTTGTGGCTCTGACCATGTGAAGCTTAGGCTGTCTATCTAACGTTCTGAATTAACTTTTCTAATATGCATTGAGATTGGTATTTCATTACAGTGTGTATAAAGATATACTATAAAGTACTACTCCATTCTAGAAAAATGCAAATCCTAGCTACGAACCTGGACACGCATATGTTTAGGCTCATAGCTAGAATTGGATTCTTTTTGGATGGAGGGGTAGAAAGCAAATAAAGCTCGGTTATTGTTGGTTACCAAAAAAG



gi|117225319|gb|CT853095.1|CT853095 CT853095 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCAGGTTCGTAGCTAGGATT
|||||||||||||||||||||
AGGTCCAAGCATCGATCCTAA

EST sequence (targeted fragment marked with yellow):
TCTTGTGCTTGTACTGCTGCATTATGTTCCATGAATACTTGGAACATGCTCTTGACTACAATGAGAATACCAGTAAGGTCTATGTTCGTCAGAAAGTTGAGTTAGAAGCAGCCAACTACTATCTTCTCAAATGGTCACCTACTCCTAGAATGGAATGCACAAGATGTCTGAAAATTTGCACGTGTGTTGTGGCTCTGACCATGTGAAGCTTAGGCTGTCTATCTAACGTTCTGAATTAACTTTTCTAATATGCATTGAGATTGGTATGTCATTACAGTGTGTATAAAGATATACTATAAAGTACTACTCCATTCCAGAAAAATGCAAATCCTAGCTACGAACCTGGATACGCATATGTTTAGGCTCATAGCTAGAATTGGATTCTTTTTGGGATGGAGGGGTAGAAAGCAAATTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAACAGAAAGTTAAAAAATTACACCTTGGGGGAAAAAAAGGGGCCCGGTTGGGGCCCCTTTGGCCTCCAGGGGGGGGGCCCGGGCCCCCCCTTTCCCCCCTATTGGGGGGGCCGAAATTACCCCCGCCTCCCGGGGCCGCCTTTTTTAAAACCGCCGGGGAGGGGGAAAAACCCCGGGCGTTTTCCCCAATTTAATTTCCCCTTTGGAAACAAAACCCCCCCTTTTCCCCCCGGGGGGGGTAAAAAACAAAAAAAGGCCCCCCCCCCATTTCCCCTTTCCCAAAAAATTTGGCCCACCCCGGAAAGGGGAAAGGGGGGGCCCGCCCCCGGGGAGGGCCCCCAAAAAACCCGGGGGGGGGGGGGGGGGGGGTTTACCCCCCACGGGGGGACCCCCTTCACCTTTGTGGCGGGGCCCCTCTAACCCCCCCCCCTCTTTTTTTCGTTTTTTTTTTCCCTTTTTTTTTTTTTTCCCCCAATGTTGGGGGCGGGTGGTTTTTTCTCCCCGGAAAAGAAGTTTAAAAAAAGGGGGGGGGGGGCCCCCCCCTTTTTTTGGGGGGTCCCCCAAAAAATATTTGTGGGTTTTTTTTAGGGGGGCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAATTTTGTAATTTATGGGGGGGGGGGGGGTGTGTTTTCCCCCCGTTGTGTGGGGGCGGGCCCCCTCCCCCCCCCCCCCCGTAAAAAAAAAAAAAGGGGTGTTTTTTTTTTTTTTCCCCCTCCTTTTTTTTGTAAATGAGTTTGTGTGGGGGAGACACCCCCCTCCACACCCCTCTTCTTTCTTTTTTTTTTTTATATAAAAAAATAAGAGAGGGAGGAGGAGAGCAACCACTCCTCCC



gi|88981035|gb|CI021162.1|CI021162 CI021162 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA

TCCAGGTTCGTAGCTAGGATT
|| |||||||||| |||.| |
AGCTCCAAGCATCAATCTTTA

EST sequence (targeted fragment marked with yellow):
ACAATTAACACAGCGGCACTTATTTGTTTGAAACCAGTCACACACACTCACGCACCCACCTATCCGTTTTATTCCTGCTAATGAACACTAGCACATGGAAGACGGAAGAACGGTATATATGATCCATATAGCTAGTAACAAGTATACGTTCTAGTACCTGCGAGAGATCAACGTATATACGTACGTACGTACATACGTGCCCTCGACATATATAGATACATACATACGTATACGCGTATACTATTCCGTCCCATACAAAGCCAATTTCTAACTACGAACCTCGACACATGTGTGTTCAGATTCATAGTTACAATTGAACTCTTTTGGGGATGGAGGGGTAGCTTATAGGGTGCATTGGGTCGCGTGAGGTCGTCGTCGCGGCGGCCGGCCATGCTCGATCACGGCGGCGGGGTGTCCCCATTCTGCGGTGGCGGCAGCGGCGGCGTGGGATGGTAGGGGAGAGGTCGGAAGCAGGGATAGCGTCCGCGTCCATAGCCGGGGGCGGGGAGATCAGGCC



gi|29615929|gb|CB620941.1|CB620941 OSIIEa06H22.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa06H22 5', mRNA sequence

TCCAGGTTCGTAGCTAGGATT
|||||||| |||.||| .|||
AGGTCCAACCATTGATGTTAA

EST sequence (targeted fragment marked with yellow):
GTTTGGAAGAGATTTAAAAGGAAGAGTGGTCCTGTTGGATTTTTGGACCTATTGCTGCATCAATTGCATGCATGTCTTGCCCGACCTGGAATTTATAGAGAAGAAGTACAAGGATAAACCTTTCACTGTTGTCGGTGTGCACTCTGCCAAATTTGATAATGAAAAAGATCTTGAAGCCATCAGAAATGCTGTTCTGCGCTACAACATTACTCATCCGGTTGTAAATGATGGGGACATGTACTTGTGGAGAGAACTGGGGGTGAACTCTTGGCCTACATTTGTTGTGATTGGGCCCAACGGGAAGGTTTTAGCACAAATATCAGGTGAAGGTCACAGAAAGGACCTTGATGATGTGGTTGGTGCAGCTCTTGAATTTTATGAAGAAAATAAATTATTACAAAACAGTTCTCTTCCCTTGGCATTGGAGAAGGACAAGGATAGTCGTTTACTAGCTTCACCGCTTAAATTTCCTGGGAAACTTGCAATAGATGTACTGAACAATCGGTTGTTTATATCAGACAGTAATCATAATCGAATTGTAGTTACCAACCTGGAAGGGGAATTTATATGTCAAATTGGAAGTTCTGAAGAAGGACTACTTGATGGCACATTTGATACTGCTTCATTTAATCGCCCTCAAGGTCTTGCTTACAACTCCAAAAAGAATATCCTGTATGTTGCAGATACTGAGAACCATGCACTGCGAGAGATTAATTTTGTGAGCGAGACTGTCAAAACACTGGCGGGAAATGGAACGAAAGGCTCTGATTACAGAGGAGGAGGTCAGGGAACTAATCAGGTTCTAAATTCACCATGGGATGTCTGCTATGATCCCTC



gi|44673081|gb|CR286515.1|CR286515 CR286515 Oryza sativa library (Han B) Oryza sativa cDNA clone y800d03p5, mRNA sequence

TCCAGGTTCGTAGCTAGGATT
|||||..|||||. ||||||.
AGGTCTGAGCATTAATCCTAG

EST sequence (targeted fragment marked with yellow):
GAGCGCCCATGTGTTGGTACCCGGGAATCGGCCATTATGGCCCGGGGAATAGAAGCTGGACAAGGCATTTCAGAGATCACATCCATTTCAAGGTACTCTATCCATCCCAAAAAAAGTCGATCCTAATTACGAGTCTGGACATATGCGTGTCTGCATGTCAAGGTACGTAGCTCGAATTTTTTTTAGACAAAGTGGTACATATGATAAAGGTTGGAGAAGAGCAGTAAACAGGGACACCACATCGTCGTCAATGGCGTCTGCGGCGAGGAGCAGCAACAAGAAGGAGCTGGAAGCCCTCCCAATCGTCGACGCCGGCGAGGTTCGTGAGCTCATGAGCTCCGGCCACCATTACCTCGATGTCAGGCTTGGGAAGGATTTTGACAAGGCGCATGCTGACGGTGCTCGCAACATTTCCTACTACCTCTCAGTGACTCCCAGTGGGAAGGAGAAGAACCCACACTTTGTAGATGAAGTGGCTTCACTCTTCGGCAAGGATGAGCACCTGATTGTGGCTTGCAACACAGGTGTGCGATCCAGGCTCGCGACTAAGGACCTTTTGGACGCGGGATTCAAGAATGTGAGGAACCTGAAAGGTGGTTACCAATCAATTCTACGAAAATGAAAACAAGGAAAAGAAGCTCATCAACAGAAAATACACAAGGAGAAACCAGGAAGGAGAGAGAACACCGGGAAAAGGGCACACGGACCACTAAGGATAATTCACGGCCGGAGACGAAAATCAGGCACGTGACACCACCAGCAGGGAAGGGCACAAACAACCGAGCCGGAACCAACGCACAAACTACATACGGACAAGAGAGAACAAAAGATACAAGCGAGCATAGCAGCACAACGCTTCCCCCCCCCCCCGTCCCCGCCCCCCCCTCCCGCTACTCATCTCGTCGATGCTGAGGCCGACACACCACAGCAGAGCAGCGAGGACGCTAGCACGTCCGAGGACAGCAACGACAAGACCGGCGGAGGACAAGGGGAGCGAAGGCGAACGAGCAGACAGCGANTAGACGAGAAATAGAGAGCGACGGCCGAAGCCAGCAGACCCAGACGCATGAGCAGAAGACAGCAGCGATCAACGG



gi|117233651|gb|CT860964.1|CT860964 CT860964 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCAGGTTCGTAGCTAGGATT
|||||..|||||. |||||||
AGGTCTGAGCATTAATCCTAA

EST sequence (targeted fragment marked with yellow):
ATCCATTTCAAGGTACTCTATCCATCCCAAAAAAAAATTCAATCCTAATTACGAGTCTGGACATATGCGTGTCTGCATGTCAAGGTACGTAGCTAGAATTTTTTTTAGACAAAGTGGTACATATGATAAAGGTTGGAGAAGAGCAGTAAACAGGGACACCACATCGTCGTCAATGGCGTCTGCGGCGATGAGCAGCAACAAGAAGGAGCTGGAAGCCCTCCCAATCGTCGACGCCGGCGAGGTTCGTGAGCTCATGAGCTCCGGCCACCATTACCTCGATGTCAGGCTTGGGAAGGATTTTGACAAGGCGCATGCTGACGGTGCTCGCAACATTTCCTACTACCTCTCAGTGACTCCCAGTGGTCAGTTCAGTTCATCATTCTTGCCTTGCTCCACTGAAGAATTCAAAATTTTGTGATTTCCATTTCTTTCATATGAGTTTTCCACTGTTTATTTTCTAAACCTTTTGAAGCTTTTTGTTGCTGATGGTTCTACTACTTGTGTTCATCTCAAGGGAAGGAGAAGAACCCACACTTTGTAGATGAAGTGGCTTCACTCTTCGGCAAGGATGAGCACCTGATTGTGGCTTGCAACACAGGTGTGCGATCCAGGCTCGCGACTAAGGACCTTTTGGACGCGGGATTCAAGAATGTGAGGAACCTGAAAGGTGGTTACCAATCATTTCTCCGAAGTGAAAGCCAGCAACCTGCAGCTCATCAACAGTAATTATCAGCTGCAGTTCCCCTGCTCGGTGCTCGCTATCCGGGAGATGGAAATCGTTTTCTTCTATGCATAATTTCAATGGTCGTGAGGACGAATAATCAGGATCAGTGGAATCCAGGCTTTGCAGTGTGTACCGGTTAGCAGAAAATCTCATAATGTCATCAATCAAATAAACCTTCAAAAAATCCTTAAAAAAGTGTTGCCTTCCC



gi|29630239|gb|CB635248.1|CB635248 OSIIEb15G19.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb15G19 5', mRNA sequence

TCCAGGTTCGTAGCTAGGATT
|||||||||||||||||.| |
AGGTCCAAGCATCGATCTTCA

EST sequence (targeted fragment marked with yellow):
GAAGCTTGAGGCTGCCTAACAGTCAACCACAAAGCTAATCAAATATTGACTTGCTTGCTACTTACTCCCTCCGTCCCAAAATAAATCAACTTCTAGCTACGAACCTGGATATAGGTTATGTCCAGATTTGTAGCCAGAAGTTGATTTATTGTGAGGCGGAGGGAGTAGCTAATTAGTTCATTAAACGGTTACATTGTTTTTCCGGACATGCATGTATTCAGAGTTCTTAGACTTTTGATCTAGTGAATTCAAGAAAGTGATATATACTGCAACTGGTTTATACAACTTGCCATGTATTATAAATTGCACTTGAATTTTAGAGTTCAATTTTTTGGTTTGAAGGTCTAAAAACAAATACTTTGTTGCCAGTATAGTATGGAATAGCACCAATTTTGACATTGAACTGCTTGGAATTAGGAACTGCAGTACTGCACACATCTTTCTTGACTTCAAATACTGACTTTTGTTGACACTTGGAATTAATGAATCAAAAAGGATACTGTATTCCCATTGGAATTGGTTAGAATGCATGATACGAAGTTATGAAGGCAAACATTCGTAAAAAAAATTCTAATGTATAAACCAAACAGAATGCATATATTCAAATTCTTTAACAGGGGGATTGGTCAAAGAAGTGCAAGGAAGCCTTAAGCAATTTTGAGCTGTTGAAGGAAGGAAAGAGCAAAGATGATATTATTTATGACAAAGCTGTCCAGGTATTACATGGCAAAAAGGATGAGTTGCATGATATATTTGAGAGTGCACTCAAGTCCAGTGATTTGAAGGGTCTGCATGCTG



gi|29638949|gb|CB643958.1|CB643958 OSJNEb04P04.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb04P04 3', mRNA sequence

TCCAGGTTCGTAGCTAGGATT
|||||||| ||||||||.|||
AGGTCCAAACATCGATCTTAA

EST sequence (targeted fragment marked with yellow):
GAGCAGTACGGCAACACCAACCACCTCCCATGGCTGGAGCTGGGCCCAAGCACCACCACCCCCTCCTCCTCCGCCGCCGCCGCCACGTTTGACCACTACGGCGCCGCGCTGGACGAGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAACCATGGCGGCATCTATGGCGGCGGCGACAGCAAGGACACGGCGGTGCACTTCGACGCCCACGCCCTCGGCAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGATCAGCCGATCAATTAGTAGGCGCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCAAAAAAAAAAGAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTCCC



gi|66921156|gb|CX108004.1|CX108004 BI146N14 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TCCAGGTTCGTAGCTAGGATT
|||||.||||||||.|||| |
AGGTCTAAGCATCGGTCCTCA

EST sequence (targeted fragment marked with yellow):
TTTTTGATCCAAAGTAAACTTATAAATCTCATTATGTGAAAATTAAACCATCCATTCTTTTAATTGAAATGCCGGATATTCACTAACGAAGAAAAGGGCATTTCAGGGNTTACNATGCCANNCCGGAGAATCTNNCTTACTTGGATTACANAAAAGCATCTTCATNGCAGCACTAACTCCTTCATCACCACNCTATAGCTATTCTTCCTNGTGTGGGAGTAGGGGGAGGAGGTGTCGATGTCGCAGGTGCAGGCGCAACAAATGTTTTTGAAGGTTCCCTTAAAGTCTTCGGGCTCTTCTCGTCAACGACCTCCATAGCAGCTCTCTCCTTTGCCTTTTGGGCTCTCTGAATTACTTCCTCCTGGAACTCCTGGACCTGCTTCTGCTGCTCGGCTTGCCACTGCCCCACCACACTGAACACCTCGCCCACCACCGACTCCACCTTCTCGGTCAGCGCCTCGGCGAAGGCCTTCCCAAGGAAGAAGGCGTCAAGCACAGCCTTGCTCTCATCGTCACCTGGTTTGGGCCCTGGATTGGTCCCGCCGCCGCCGCCGCTACTCCTGGCTACGAATCTGGAGAACCTTCTGGCGGAGCACGGGGCGGCGGGGAAGGAAGCGCTGCGGCGCNGGGCCGGGGGCGTGGAGCGAGACCCAGCNGTCGGGAGGCAGCGTGCCGCGGTGGTGGGAGCGNGCCTGTGTGTGCTCGGGTTTGACCGGATCCGGGGATCCCGGNTCGCCAGGGCGGCAAAGAACAGTTATACGGGTGGAGCAAAGCCTTAAGGGCAAAAAACCCGGGCGGTAAGGGAGAGGAACCGGCTAAGCCGGCGCCCCTAGGAATCACGCGCTCTCGACGTAGCTGTCGTTGCTACTGCTGTTTNTNNTAANACAAGAGAGCAGCAAGNATGATAGACAACACTAAGATACAGACGAATCACACGAAGACATGACACATACAGTAGACAGGATCAGACAAGACATGACAGCAGTAAGAAGAACAGGAGACACAGGCAGAAGACAGCAGAGACAGAAGCAGACGAACCGATACGAATCAACAAGAAAGCATACAGACAGACAGCAATAATGAACACACATAGAATCAAAGATACTACAAATATAGACTACACTAATACAAGAGGTG



gi|29625001|gb|CB630012.1|CB630012 OSIIEb06L06.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06L06 5', mRNA sequence

TCCAGGTTCGTAGCTAGGATT
|||||||||||||||||.| |
AGGTCCAAGCATCGATCTTCA

EST sequence (targeted fragment marked with yellow):
GCGCATTGGTGCCTGCTTAGTGAATATATGTCGTTCCACATCACAAAACATTCTTTGGAAGCCCTAGGATGAACTATTTAGGGGGCTTAATCTGCAGTGTGATTTTTGTGAACTGTGTTTCCAGTTGAGAAACAGTATGCTGTTGTTCAAATGTGTGTCGTGTGAACACAAGGTAGATCCTTTTGTAGTCACAACCTACAAGGACACTGTTTCAATTCAGTTTTTTCTCTCACTGTAGCTGTATGCCCAGTTTTGATATATTTAACTGCAACATGCAGTAGCTCCTTTAGTTATTTTCCTTTTGGTACTTATCTCCATCTATGAATCAGATATTGAAAAGGGAGTCAACAGAAGACCCTTGTATGAGAGTCATCCTTTATCATCATTTTCGTGGACAACAACTGACAATATGGATATGGTATTTTTAATGTTACATTTCTGTATTCTTTACAAAATCATTTTGGCCTGCATCAACGTGTTATTTTTTGGTCATTGTGTTGGCCATTCCAAACATTTCATCTGTGTTCAACCTTGGCTGTAACTAACTTTGTTGATGAAGCTTGAGGTTGCATAACATAGTCAACCACAAAGCTAATCAAATATTGACTTGCTTGCTACTAACTCCCTCCGTCTCAAAATAAATCAACTTCTAGCTACGAACCTGGATATAGGTTATGTCCAGGTTTGTAGCCAGAAGTTGATTTATTGTGAGGCAGAGGGAGTAGCTAATTACTCCCCCCGCTTCATATTATTAGTC



gi|88366040|gb|CI548287.1|CI548287 CI548287 Oryza sativa (japonica cultivar-group) root of seedling 50ppm CuSO4 for 3days Oryza

TCCAGGTTCGTAGCTAGGATT
||||||..||||.| ||| ||
AGGTCCGGGCATTGCTCCGAA

EST sequence (targeted fragment marked with yellow):
ATTTTGAACGATTCGTATTGCATAACTATGGAAATTCGTAAGAGATGAAAAGAAATAGGAAAGCCATAACATCTTGTTAACATGATAACCGACCGTCCAGCAACGCCCACCGTCTTATTTTTGTTGAATTTATTTCATCTATTCGTTTCCGTCTAGAAATCTTTGGTACCGTGAAGGGATATCCAGCGACGGGTTGCATCCGTTTCTCCTTGACCTGTATAATGTTTCTATATCCGTCTATCGAGAGACAAGGCCGTCGGCAACCTTTTTCCAAAGGCCATTGCGCTTCCAGGTCCAGTTCTTGAGGAAGGGAGGGTCCATGCCTGTCTCGAAAGCCTCGTTACGGGCCTGGATCTGTGCATTGAGGAGAGCC