miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCGGTTGGTGTTATCAAGGT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|29677797|gb|CB674072.1|CB674072 OSJNEe08P04.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe08P04 3', mRNA sequence

TCCGGTTGGTGTTATCAAGGT
|| |||||||||.|||||. .
AGTCCAACCACAGTAGTTTGG

EST sequence (targeted fragment marked with yellow):
AATCAATGTTCAGGATACTTTGACATAAATCCACGTGCAAGTAAAGATGGGAAGGCAATAAAAAATAAAAGGCCACTAGCATTCAAGAGATTAGCATACTTCCAGGCATACATGATTTTACGGTACAAGCTGCCATTGGAGATGATGCGTGCAGCAAATGTACTGTTGGGAGGGATATACACCAAGAACTACTATGAGTTTAACCGAGACTACAACATTTTAATGACTGTGGCAAAGCTGTTTGCCCCGTATGTTTTTTTCAAAGGATGGTTTGATGACACCAACCTGAGGAAACTGTGGAAGGGGACGGCTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGGTCATACCTTGTGAACACCCACATTCCAGGTGCTATAAAGTATGCCAATGACCAGAAGGGGAAAGCACGTAGTGCATAAAAATACATTTAGATGATGGTGTACATGCAAGGTGTTAGTTTGCATGGTGAATATATTGGTATTATTATATGAAAAATATTATAATGCTAAGATTGTGATAGGTCAATTATGCGGAATAAGTCATCCGTGTCAGAGTTGTGTGGAGTGGTGTGTGTTGTAGGGCTTTAGCCCCTTTTTTTTTTTTTTAATATAATGAGGGGCAGTTGTCCTGTATTTTTCGGGAAAAAAAAAAAAAAAAAAAAAAAGAAAGGAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC



gi|33688441|gb|CF316680.1|CF316680 HD--06-B08.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA library (HD) Oryza sativa J

TCCGGTTGGTGTTATCAAGGT
||||||||.|||. ||| |.|
AGGCCAACTACAGCAGTCCTA

EST sequence (targeted fragment marked with yellow):
CCTTGGACCTGACTGGACTGAAGGAGTAGAAATGTGGCCTGAAGGTTCCATGGATAATGTCGGAATCAAAGATGCAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATGAAAAAAAAAAAAAA



gi|88311854|gb|CI577460.1|CI577460 CI577460 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TCCGGTTGGTGTTATCAAGGT
||||||.|.|||| ||| ||.
AGGCCAGCTACAAGAGTACCG

EST sequence (targeted fragment marked with yellow):
GACTTTCCTTCCCAGCTGCGCTAAGCAATCCCCACCCACCACCGCTGCAGCTGCAGTTGCTTCCTCTCCTCCCCTCTCTTCTCGCCGTCGGTGGGGTCCTCCTCCACCCTGTCTCTCTCCTCCCCCCCAGATCCACCCCTCCCCCTTCCCGAACCTTCTGGAACCATCTGGAGGAGGAAGCAACCGCCCAAGCTGTAGCGGGAGGGGTGGGCGGCGGGGGAGGAGCGATGGAGACCCTTGCGCAGCGCGCGGCGTTGCTGCGGGAGTCGCTGCAGAAGAGCCAGTCCGTGACCGACGCCGTCGTCTCCATCCTCGGCTCCTTCGACAGCCGCCTCTCCGCGCTCGACGCCGCCATGCGCCCCATCCAGGTGAGGACGCACGCTGTGCGGACGGCCATGAGAACATCGACCGGACGCTGCGC



gi|88508238|gb|CI435744.1|CI435744 CI435744 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group

TCCGGTTGGTGTTATCAAGGT
||||.||||||||||| ||
TGGCCGACCACAATAGTAACA

EST sequence (targeted fragment marked with yellow):
GAAGCAAAGACGGAGCTACTTATGGCTCCTTTTGACCTTTTCAGTCCATCTAACCTGATTTCTGATCTTCTCATAATTGTACAATGATAACACCAGCCGGTATGGAAGGTAAAAAAGAAGCCATTTCATTAGATATTTTTCTATGGTACAAAATGATTGCAACGTTATAAATAGCTCTAAATAAAAAAGGGAGACCTCCTCCTGTGACTAGGCAGCCTATTGGTGTTACAAATACAACAGGGTTGAAGAATCACTAGTACAGATGTGTATACAGTATGTCAGTTGCCGAACCCAAAAGGTGATCTCGTCCTGCTGCCACCTTCACCATACTGTCCGTTCCATTTTCTTAATTCGTTCATGCTCGTCGCATTATACGAAACAGACGGGCTTACCTTGGCTTTTGCTTGAATGAAATCATCAAGTCTAAGGGGTCTTAGACCCGTATTTTGGCTACACGGACCTCCCTTCT



gi|29688689|gb|CB684964.1|CB684964 OSJNEf14P18.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf14P18 3', mRNA sequence

TCCGGTTGGTGTTATCAAGGT
|| |||||||||.|||||. .
AGTCCAACCACAGTAGTTTGG

EST sequence (targeted fragment marked with yellow):
ATCAACGCAATGATGGCAGCCATAAACAGTCAGTGGAATAAACAAGCTCAAGTGATATACCATGTGACTTCCTCTCACCAAAATCCCGTACCGTTATCTCTTATTGAAGAATCATTGTACAAATACTTTCACAAAAATCCACGTACAAGTAAAGATGGGAAGGCAATACAAAATGAAAAAATTTTAACGTTCAATAGGTTAGTATACTTCCAGGCATACATGATTCTACGGTACAAGGTACCATTGGAGATGATGCGTGCAGCAAATGTACTGTTGGGAGGGATATACACCAAGAACTACTATGAGCTTAACCGAGGCTACAACATTTTAATGACTGTGGCAAAGCTGTATGCCCCATATGTATTCTTCAAAGGATGGTTTGATGACACCAACCTGAGGAAACTGTGGAAGGCGACGGCTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACCCACATTCCAGCTGCTATAAAGTATGCCAATAACCAGAAGACGAAAGCACGCAGTGCATAAAAACATATTTAGATGATGATGTACATGCAAGGTGTTAGTTTGCATGCTGAAAATATTGCTATTATTATATGAAAAAATAGTGTGGAATAAGTGATCTATGTCGGGTGGGAACTCTCATCTATGGCAGTGAGAGCGCTTACTATCACTGTTGCCATTGCTATTATAAAACATTCATGTGGTAAAT



gi|163929197|gb|EG711006.1|EG711006 Os5MPREST2566 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-M1H09SA, mRNA

TCCGGTTGGTGTTATCAAGGT
.|||.|||||||.|||| ||
GGGCTAACCACAGTAGTGACA

EST sequence (targeted fragment marked with yellow):
GCCCCCTTTTTTTCTGCTGCAGATGATGAATGGTAATATTTGGTCAGTCTCTGATTCAAAAGGCCTTGGAGAAACTATCATGCTTGCCCTTCAGTTCCAGCTGCAGCATGTGACTCCGGTCTCTGGAGCATCCTCGGACTTGTTCCGATCAGCGCCAATTCCCAATTTTAATGGACTCCAAGTCATTCTTGTGGACAGTGATGACACCAATCGGGCCGTAACTCACAAGCTCCTGGAGAAGCTTGGTTGCCTAGTCCTCTCGGTTACTTCCGGCATCCAATGCATCAACTCCTTTGCCAGTGCTGAGTCATCTTTCCAGCTGGTGGTTCTTGACCTCACCATGCGTACAATGGATGGATTTGATGTAGCTCTTGCAATCAGGAAGTTCAGGGGGAATTGTTGGCCACCGTTGATAGTTGCTCTTGCGGCAAGCACCGATGACACCGTTCGGGATCGGTGCCAGCAGGCAGGAATAAACGGTCTGATCCAAAAACCAGTCACTTTAGCAGCACTGGGAGATGAACTGTATAGAGTCCTTCAAAACAATCGAAAGAGCCTCATGGTTCTCATTTCT



gi|29679479|gb|CB675754.1|CB675754 OSJNEe11K20.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe11K20 3', mRNA sequence

TCCGGTTGGTGTTATCAAGGT
|| |||||||||.|||||. .
AGTCCAACCACAGTAGTTTGG

EST sequence (targeted fragment marked with yellow):
ATCAACGCAATGATGGCTGCCATAAATAGTCAATGGAATAAACGAGCTCAAGTGATATACCATGTGACTTCGGCTCACCAAAATCCCCTACCAGTATCTCTTATTGAAGAATCAATGTTCAGATACTTTGACATAAATCCACGTACAAGTAAAGATGGGAAGGCAATAAAAAATAAAAGACCACTAGCATTCAAGAGATTAGCATACTTCCAGGCATACATGATTCTACGGTACAAGCTGCCATTGGAGATGATGCGTGCAGCAAATGTACTGTTGGGAGGGATATACACCAAGAACTACTATGAGTTTAACCGAGACTACAACATTTTAATGACTGTGGCAAAGCTGTTTGCCCCGTATGTCTTCTTCAAAGGATGATATACATTTTGATGAAGGTTTGATGACACCAACCTGAGGAAACTGTGGAAGGCGACGGCTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACCCACATTCCAGCTGCTATAAAGTATGCCAATGACCAGAAGGCGAAAGCACGTAGTGCATAAAAATACATTTAGATGATGGTGTACATGCAAGGTGTTAGTTTGCATGGTGAATATATTGCTATTATTATATGAAAAATATTATAATGCTAAGATTGTGATAGCTCAATTATGCGGAATAAGTCATCCGTGTCAGAGTTGTGTGGAGTGGTGTGTGTTGTAGGGCTCTAGCCCCTTCTCTCTCTTCTTAATATAATGAGGCGCAGTTCTCCTGT



gi|66919914|gb|CX106762.1|CX106762 BI128F15 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TCCGGTTGGTGTTATCAAGGT
| |||||||||||||| |. |
AAGCCAACCACAATAGCTTAA

EST sequence (targeted fragment marked with yellow):
TGGGACCTGCAGGTACGGTCTGGAATTCCGGGTCGACCACGCGTCGCCACGCGTCGGATATCTCATCTCATCTCATCGACCGAGCATTCTAGCGAGCGAGCGGCAAGCCAGCAAGATCTGACTCCTCACTCTCTCACCGATCTACAGCAGCAGTGGTAGTAGCTAGCAGCGTCAGCGTAGCAAGGGGTTGCGAGAATGGCCTCGCCGTCAGCGCCGGGGCCGAAGCTGCAGAAGGCGATGGTGGCGGTGGACGAGAGCGAGTTCAGCCACCACGCGCTGGAGTGGGCGCTGCGCAACCTCGCGCCGACCATCGCGCCGCCGCTGCTCGTGCTCACCGTGCAGCCGCTCCTCCCCCTCGGCTACGTCTCCGCCGCCTCCTTCGGCTCCCCTCTGGGCACCCCCGTTGTAGCCCCGGAGCTGATCAAGGCGATGCAGGAGCAGCAGCAGCAGCTCTCGCAGGCGCTCCTCGACAATGCCAAGCAGATCTGCGCGCAGCATGGGGTGGCTGTAGAGACAATGATCAAAGTAGGAGATCCTAAGGAGATGATATGTCAAGCAGCTGAGGAATCAAAGGTTGATTTACTGATCGTTGGGAGTCACAGCCGTGGACCTGTACAAAGGTTGTTCTTGGAAGTGTCAGCAATTACTGTATGCATCATTCGAAGTGCCCAGTCTTGTTGTGAAGAAGCCGAGTAATAAGTTTCCGAATCTCATAAAATCTTTGTGTATGTCGATGTGTTATCTCAAAATGCATAACGAAGCGTATAGATGAATTCGATAACACCAACCGAAAGGGGGGCGCAAAGACAAGATATACGGGATGACGAAAGCCCTAATGGCGAAAAGAACGAGCCGGGTATAAAGCGAGGAAACCCGGTCCAAATCTGGAGCCTCCCCGATAGAGCGCGACCCTCGAGAAGACCCGACAGGGACACACCCCTCCCTCGAGTGTCATCGCCGCGCACTCTGGGATAGT



gi|29636501|gb|CB641510.1|CB641510 OSJNEb01D03.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb01D03 3', mRNA sequence

TCCGGTTGGTGTTATCAAGGT
|| |||||||||.|||||. .
AGCCCAACCACAGTAGTTTGG

EST sequence (targeted fragment marked with yellow):
CATAAACAGTCAGTGGAATAAACAAGCTCAAGTGATATACCATGTGACTTCCCCTCACCAAAATCCCGTACCGTTATTTCTTATTGAAGAATCATTGTACAAATACTTTCACAAAAATCCACGTACAAGTAAAGATGGGAAGGCAATACAAAATGAAAAAATTTTAACGTTCAATAGGTTAGTATACTTCCAGGCATACATGATTTTTCGGTACAAGGTACCATTGGAGATGATGCGTGCAGCAAATGTACTGTTGGGAGGGATATACCCCAAGAACTACTATGAGCTTAACCGAGGCTACAACATTTTAATGACTGTGGCAAAGCTGTATGCCCCATATGTATTCTTCAAAGGATGGTTTGATGACACCAACCCGAGGAAACTGTGGAAGGCGACGGCTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACCCCCATTCCAGCTGCTATAAAGTATGCCAATAACCAGAAGACGAAAGCACGCAGTGCATAAAAACATATTTAGATGATGATGTACATGCAAGGTGTTAGTTTGCATGCCGAAAATATTGCTATTATTATATGAAAAAATAGTGGGGAATAAGTGATCTATGTCGGGTGGGAACTCTCATTTATGGCAGTGAGAGCGCTTACTATCACTGTTGCCAGGGCTATTATAAAACATTCATGTTTTAAAAAAACATAAAAGAAAAAAACCTCGAGGGGGGGCCCGGTACCCAGCTTTGTC



gi|218493504|gb|FG947151.1|FG947151 MA_93-11_04046 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s

TCCGGTTGGTGTTATCAAGGT
||||||||.|||. ||| |.|
AGGCCAACTACAGCAGTCCTA

EST sequence (targeted fragment marked with yellow):
ATCCAAAGATGCAATTAATAGACGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATGAAGAAGAAAAAAAGAAAACCAGAATCTGACCTTGTAGATACACAAGCTAACGCCATGAAGGGCCCCTCTCAGCATGTAGAGAAGAACAAGCCTCCTAAGCGTGCTGATGAGGCAGTTGAAACCGTGCTTTGTCTCCCGTTCTATGACCAACAACCGAGCTGATTGTAAAGGTGTATGCATTGATGAAATTTCAATCCTCCTAGGCGCTTGTCGGATGCTGTAACAAATACCCTTGTGGAGAGGATGCCATTGGTCCTTTGTAATTTTTTATGGATCTATAT



gi|86902038|gb|CI300277.1|CI300277 CI300277 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

TCCGGTTGGTGTTATCAAGGT
|| |||||||||.|||||. .
AGTCCAACCACAGTAGTTTGG

EST sequence (targeted fragment marked with yellow):
CAAGTAAAGATGGGAAGGCAATAAAAAATAAAAGACCACTAGCATTCAAGAGATTAGCATACTTCCAGGCATACATGATTCTACGGTACAAGCTGCCATTGGAGATGATGCGTGCAGCAAATGTACTGTTGGGAGGGATATACACCAAGAACTACTATGAGTTTAACCGAGACTACAACATTTTAATGACTGTGGCAAAGCTGTTTGCCCCGTATGTCTTCTTCAAAGGATGGTTTGATGACACCAACCTGAGGAAACTGTGGAAGGCGACGGCTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACC



gi|117212327|gb|CT857557.1|CT857557 CT857557 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCGGTTGGTGTTATCAAGGT
|||.|||.|||||| ||| .|
AGGTCAATCACAATTGTTGTA

EST sequence (targeted fragment marked with yellow):
TAGTCCGATCATCAACAAATCTAAATGGGAAACCTGCAGTGATGTTGTTAACACTAACTGGAAGGACTGCGAAAGATCTGTGCTGCATATCTATCATGAACTTATACAGTATGGTCTTCTTATATGGGTGTTCAGTGGAGATACAGATGCAGTGCTTCCAGTAACATCAACTAGATACAGCATCAATGCCCTCAAACTTCCGACGGTAACCCCTTGGAATGCTTGGTATGACGATGATGGTGAGGTTGGTGGCTGGACTCAAGGGTACAAGGGACTCAACTTCGTGACTGTGAGGGGCGCAGGTCATGAGGTTCCTCTTCATAGGCCCAAACAGGCTCTAATTCTCATCAAATCATTCTTGGCTGGGAGCCCAATGCCCAGTGTTCAAGATTTTTACAGTGATGTGTAACATATTTTGGCTACAATTAGATATTACCAGGATCACAAAAGGCAATTCAAGCGAGGTTGCTAGTATCACATGGAACTCGTACCATATATTGGTAACAATTCTTCCCTAAATAAAATAGGGGAACAAAATCATGGGAATAGTTTTCCGTGCCACGAAATCGACACTGTTCTGTTTGATATTGGATAATGAACCTTAAGACAAAAAGTTATTAATTCAAAGGGTGAAACCGTTCACATTGGTTGGTCGTACAAGGAATGGTGTATAACCATTTGTTGTGGTAATGACAAAATCCTATTAAATCAAGGGGTGAAATGGTTCCCATTTGGTTGTTCCCAAAAAAAAAAAAAAAAAAAAACCTCCAAGGGGGGGGCCCCCGGTTACCCCCATTTCCCCCCTAAAGGGGGAGTCCTATTTACCGCCCCCCCCCCCCTTGGCCCCTCCTTTTTTAAAACCGCCCCGGACCGGGGAAAAAAACCCCTGGGGTTATCCCCAAACCTTAAAACCCCCTTTTGACCCAAAATCCCCCCCCTTTTCCCCCCCCCGTGTGGGGTAAAATAAACCAAAAAAAAAGGCCCCCCCCCCCACCTTTTCCCCCTTTTCCCCCCCAAATTTTTTTCCCCACCACCCCCATAAAAAGGGGACAAAAAGAGGGAAAAACACCCCCCCCTCTTGAAACCACGCCGCCACCACTTAATAAAGCCCGGCCCGCGGCGGGGGTGGTGGGGTGGGGGGTGTTGTTTTACGCACCCCGCAGCACAAGATGGGTGGAGAGCCACCCCATATAAAAATAATTGTTTGTGTAGGGACAGGAGCGCCCCCACCGATAGAGAAGGCGCAGCCCACGCCCGCCCCCCCTTCTTTTTTTTTATTCTGCTTTTTTTTTTTTTTTTGTTCTCTCTCTTCGCTCCCTCTCTCTTCTTGTTCTTCTTTTTTTCTTTTCTTTATACTCTCGTTC



gi|29633424|gb|CB638433.1|CB638433 OSJNEa06L12.r OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa06L12 3', mRNA sequence

TCCGGTTGGTGTTATCAAGGT
|| |||||||||.|||||. .
AGTCCAACCACAGTAGTTTGG

EST sequence (targeted fragment marked with yellow):
GCGTGCAGCACATGTACTGTTGGGAGGGATATACACCCAGAACTACTATGAGCTTAACCGAGGGTACAACATTTTAATGACTGTGGCAAAGCTGTATGCCCCATATGTATTCTTCAAAGGATGGTTTGATGACACCAACCTGAGGAAACTGTGGAAGGCGCCGGCTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACCCACATTCCAGCTGCTATAAAGTATGCCAATAACCAGAAGACGAAAGCACGCAGTGCATAAAAACATATTTAGATGATGATGTACATGCAAGGTGTTAGTTTGCATGCTGAAAATATTGCTATTATTATATGAAAAAATAGTGTGGAATAAGTGATCTATGTCGGGTGGGAACTCTCATCTATGGCAGTGAGAGCGCTTACTATCACTGTTGCCATTGCTATTATAAAACATTCCATGTTAT



gi|86598503|gb|CI355120.1|CI355120 CI355120 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TCCGGTTGGTGTTATCAAGGT
.|| |||||||||||||||.
GGGACAACCACAATAGTTCTT

EST sequence (targeted fragment marked with yellow):
CGGAGGTTCTTAAAAGGCGCCTTAAATAAGGTAAACTGTCGCATTACAGCTAGCAGCAAACATGAGTTCGCGAATTGATCAAAATAACATTAGGCAAAAGAGCTCAAAAAAGGATAGTCTGGGGCAGATAGTTCTATATCCTTGCAAACAACTCGCTATAGCAAAACTCCAGGCAGACGCAGCAGCAGATTTTAAGCGTTGGCAGCAGCCTGGGCGGCAGCATCCCGCTTCCTTTGCTCCTCGATGATGCTGAGCTTGATGCCCTTGCCCTTGGGCAGGCTCACCCAAGGCTTGTTGCCCTTGCAAATGGTGAACACATTGCCAAGAGGGGTGGCGAATTGGTGGCCCAGGGCATCCTCAAGGTGGATGGTCTCGAAGCTGCCTTTATGCTTCTCCTGTTCTTGATAACACCAACAGGGCCTGTGTTCCTTCCTCCAGTCACCATGACAACATTGCAACATCAAACTTGATGAAG



gi|44679574|gb|CR293008.1|CR293008 CR293008 Oryza sativa library (Han B) Oryza sativa cDNA clone y781e06p5, mRNA sequence

TCCGGTTGGTGTTATCAAGGT
.|||.|||||||.|||| ||
GGGCTAACCACAGTAGTGACA

EST sequence (targeted fragment marked with yellow):
NCCTCTGTGGTACCGGGAATTCGGCATTATGGCCGGGTGACAAAAGGCTTGGAGAAACTATCATGCTTGCCCTTCAGTTCCAGCTGCAGCATGTGACTCCGGTCTCTGGAGCATCCTCGGACTTGTTCCGATCAGCGCCAATTCCCAATTTTAATGGACTCCAAGTCATTCTTGTGGACAGTGATGACACCAATCGGGCCGTAACTCACAAGCGCCTGGAGAAGCTTGGTTGCCTAGTCCTCTCGGTTACTTCCGGCATCCAATGCATCAACTCCTTTGCCAGTGCTGAGTCATCTTTCCAGCTGGTGGTTCTTGACCTCACCATGCGTACAATGGATGGATTTGATGTAGCTCTTGCAATCAGGAAGTTCAGGGGGAATTGTTGGCCACCCGCTGATAGTTGCTCTTGCGGCAAGCACCGATGACACCGTCGGGATCGGTGCCAGAGCAGAATAAACGGCTGATCAAAAACAGCACTTTACAGACTGGA



gi|66925503|gb|CX112351.1|CX112351 EI075H21 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TCCGGTTGGTGTTATCAAGGT
|||.|||.|||||| ||| .|
AGGTCAATCACAATTGTTGTA

EST sequence (targeted fragment marked with yellow):
TGTCCTGAGGTACGGTCGGAATCTGGGTCGACCACGCGTCGCCACGCGTCGGAAAAGCATTCAACTGTATACTTCAATCTGGCTGAGTGTGCAAAAGGCACTTCATGTTAGTCCGATCATCAACAAATCTAAATGGGAAACCTGCAGTGATGTTGTTAACACTAACTGGAAGGACTGCGAAAGATCTTGTGCTGCATATCTATCATGAACTTATACAGTATGGTCTTCGTATATGGGTGTTCAGTGGAGATACAGATGCAGTGCTTCCAGTAACATCAACTAGATACAGCATCAATGCCCTCAAACTTCCGACGGTAACCCCTTGGAATGCTTGGTATGACGATGATGGTGAGGTTGGTGGCTGGACTCCAGGGTACAAGGGACTCAACTTCGTGACTGTGAGGGGCGCAGGTCATGAGGTTCCTCTTCATAGGCCCAAACAGGCTCTAATTCTCATCAAATCATTCTTGGCTGGGAGCCCAATGCCCAGTGTACCAGATTTTTACAGTGAATGTGTAACCATATTTTGGCTACAATTAGATATTACCCAGGATCACAAAAGTGGATCCAAGCGAAGGTTGCTAGTATCACATGGAACTCGTACCATATATTGGTAACCATTCTTTCCTACATAAAAATAAGGACACAAGCCTGGCATAGTATTCGTGCCCGAAATCACCCTGGCGTTGACATGACTATGAACCTAGACCACAGTTAATCCGGGTGACGATACATTGTGCGTACAGGATGGTAACCAGGTGAGTATTACAAACAAACTCAGGGTAATTACATGTGGAGACAGATGTAAACACCACGTCATCCCTCGACAGGGGAAGTACATCCGAAAAACCAGTCCAACACATATCCCCCA