| mature miRNA: TCCTTGAGGAGGTACCATGAGGTAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29676252|gb|CB672527.1|CB672527 OSJNEe06J16.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe06J16 3', mRNA sequence TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): CCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTACATGAGGTTTTACTTTTTCTATTGTAAATTTGTTACCTAGGTAATATGAGGTACCAAATTTTACATTAAATTTTTGGTAACTCATGGAACCTCCTCAAGCACTGTAAAATTGCTCTTTTTAATCGTAGAGGATGGAGAAAAGGGTAAAGTTTTTGTT | |||||||||
gi|88259327|gb|CI363620.1|CI363620 CI363620 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): GAAATACTAAAAGGAAACAGGGTGAGGCATGCAAAATTCAGACAAAATGACCGATTACACATCAAAGCTTCAACACCATGTTGAGCTCATATTTACATACCAGAGCAATTTTATGGTTCTTGAGTAGGTACTATGAGGTACCATTTTTTCTATTATAAATTTGGTACCTCTTGGTATCTAGGTACTATGATGTACCAAATTTTACACTAAAATTTTGGTACCTCATGGTACCTCCTTAAGGACCGTAGAATTGCTCTTTTCAGAATCTCCACCAAGTAGGGCCTCCCTCCTCTCTTGGCATAAGTCGGTCTGGCTTAATGCGTTGTGTATCGAATATTCTTATCTTCTAATATATTAACGTGCAATCCTTTTGCGCGTTCGAGAAAAAGCCAAATAGGGCCTGAATCCAGTCCACCACTGAGAATTGCATCAGGATAGGACTACCCTGA | |||||||||
gi|29616619|gb|CB621631.1|CB621631 OSIIEa07K16.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa07K16 5', mRNA sequence TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): CTGAACAGGGGAGGGGAGGGGATCCTGGCTGACTATTCAATATCCATGGCGCGGTGCATCTCCTTCCTGTCTACCTCCTCGTCCTTGCCATGTGCCACAAAACCGCCCTGCTGCTCAGTGTCCTCTGTCTTACCCTCGTCTCCGTCCTCTCATCAATGCCGAGGTAGGAAAACGAGTTGCGGGTCAATTAGGGCGCTGCGGGAGGATTGGAGGGAGAGATCCAAGGCCATCCCTCCTGGTGGCGTCTACCCAGCCAAGGACCACTGCAGCCAATGTGGGCTTTGTGACACCTACTACATTGCGCATGTCAAGAATGCCTGCGCATTCCTAGGAGATGGCATGTCCCGTGTCGAGTAGGATTTGGAGCCATTGGTCCATGGGAGGGGCAGGAAGCAAGACATGGATGAGATGTACTTCGGAGTGTATGAGCAACTCCTATATGCCAGGAAGATGAAACCTGTTGAAGGAGCCCAATGGACAGGAATAGTGACAACGATTGCGGTTGAGATGCTAAAGGCAAATATGGTTGATGCTGTGGTTTGTGTACAAAGTGACCCAGATGACAGGCTTGCTCCAATGCCTGTTTTAGCCAGTATAAATTTTGGCACCTCCCAATATCTGTGATAGAAGATGAGGTACCTCTCGGTATCTCCTCAAGGACCATAGAATCACTCAAAAGACGCCAGATGAAGTTATTGCAGCCAAAGGTGTGAAGCCAACATTATCACCTAATCTCAATACGCTTGCGTTGGTTGAGTTTCATGCTATCCTTTGACAGGCAGCTGGTGTGAAGCGTCTTCTCTTCT | |||||||||
gi|41883144|gb|BX928273.1|BX928273 BX928273 Oryza sativa library (Han B) Oryza sativa cDNA clone y661b11p5, mRNA sequence TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): TGGAATTCGGCATTATGGCCGGGTCTACCTCGAATGTTAGTCCGAAGTTGAGAGCTGCATGAAGTATCTAAAGGAGAAAAGAGAGAAGGACCCTTACAGGAATATACTCGCCAGGCTTCTCTATCAGATGGTTCATGGTCTTGATGCAGAAGTTCCCACATTTGAACCGTGAGAACTAAGATGGTCACTTGCAGAATTAGATAGGAGTACATTCAAGTCAATTGTTTATATTGTTTCATGCATTTTTGTTTCACATAGTTATCAGTTTTTTTTTCTCAGCAATTCTGCTTGTCAATTTGACGGCAATATTCAGACCATAGAGGTTAATAAAATTCAGTTTACAATCTTTGTTCCATTTTGTGAGTTTTTGCTGGGGAAAAAACTATGAGGAATTTTACAATCCTTGAGATACCTAAATTTTACATTAAAATTTTTGGTACCTCGAGGTGCTTAATACCTAGAGGTATCAAATTTTCCTCTTGGTACCTTCTCAAGGATGGTTAAATTACCAAAAAAACTATACATTCATGACAGAGATGACAACATCAGCATGTATGGTGAAAACATTATTTAGAGACTATGCACCAGAATCTGAAGAAAATGACGGATTCACTGGGACAAACTTATACTCTTTCACATGGGGAACTGCTATGAACCCAGGATTGATGACGGCGTAATAAGGATTAATTATTCAAATCCTGTGAATGCCCATAAAAACCTCTCTTTCACACATCGATCACGAATTTGCTCACAATGTGCTAAACTTCTCAAAAAGTCGGACAACATACAATCAGTATTCTCCGCCCACACATCTG | |||||||||
gi|86530281|gb|CI170487.1|CI170487 CI170487 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): TGGTACTAAATTTACAATAGAAAAAATGATACCTCATGGTATCTTCTTAAGGACTGTAAAATTGCTCTTTTGTCTATGGGAGATGAACTGGAGGATCCCTTTGCATAGATAATCAAGACAACAGGAAAATGCTTCATATGATGCTACATGTATGGAAATGACATGCACCGGCAATATATGAAGAATATAGTGGCTGTGTGGATTCAGCTTGAGCCGGCATAGCAGCAGCTGCACAAGAACATCATAACAGTGACAGTTTCACTCTTCTTTTAGCTGATGTTACAGTTATATGATGCCTGAGGGACCTGCATCTGGTGAGTCCTTACAAGAAAAATTCTAGGAACCTAATGACAGTTTTGGTTGCTATGTTGATTTTTCAACTGGATAAGCATAACCATCGGTTCTTCAAGATTGCACATGGTCTGAAGCAGAAAGAACCTTCAAGAACTTAGGTAGACTGAACCATGTGCGGAGCGCGGCGGCTTCTCCGCGAACGCCCGGCACCCCACCACCGCGTCCCACCGCGCGTACGCGTCGCCGGCTCCGC | |||||||||
gi|117220016|gb|CT858558.1|CT858558 CT858558 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): ATGAAAAAGGATAATGGCCAGCCGCCGCGACGTCGCGGCGCTCGCGCTGGCCATCATGCTCGCCATGGCGTCGACGCTGCCCGGCGCCGCGTGGCGGCGGCGGCCGGCGCGTCGCCGCGCAGGGGGCTGTGGGGGAAGGACATGCCGGTGAACCCGTTCTGCCCGTGGGACGCCGTCAAGTTCGGCGCGTGCGCCGGCGTGCTGGGCGTCGTGGGCGTGCAGGCTGGCGCCCACCTCGGGAGCAAGTGCTGCGCGCTCGTCGACGGGCTCGCCGCGGCCGAGGCGGCGGCGTGCTTCTGCACCACCATCAAGGAGAGCGTGCTCCGGATCCCCACGGAGTGGACCGTCGGCGTCAGCGTCCTCGTCAGCACCTGCAAGACGGAGCTCCCTGACGGCTTCAAATGTGTCTGATTAGATCTGCATTTTAGAGTAATTCTACGGTTTTTGAGGAGGTACCATGAGGTACCAAAAATTTAGTGCAAAATTTAATATCTTATGATACCTCATAGTATCTAGGTATCATGAGGTACTAAATTTATAATAGAAAAAATGGTACCTCGTGGTACCTTCTTAAGGACCGTAAAATTGCTCTGCATTTTATAATTTCGTTTAGTGTCCAAAGTGAAGCAGCATTGTAATTCTTTTGCTTACCCTTGTACAAGCTTTTGCATTATTCATAAAAATGCAGTCACTTACTGCGTTCGCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAGGGGCCAGCTGGGCCCTCGAGGGGGGGGCCCGGTCCCCATTCGCCCCTAATAGTAAGTCGAATTACCGCGCCCTCCCCCGCTTGGGGAAAAAAGCCAAAAAAGCCCCGCCCCCATTCCCCCTTCCCCAAAAATTTTCCCCACCCCCGAAAAGGGGGAAAATGGGGGCGGCCCGCCCCGGTGGGCGGCCCCCCTTTTAAACCCGCGGCGGCGGGGGGGGGGGGGGGTGTTTATCCGCCGCAAAGGCGGGGGGCCCCCCTTAAAAATTTTGGTGCGCGGGCGCCCCTCAAAGGGCCCCCGCCCCCCCTTTTTTTTTTTTGTTTTTTTTCTTTTCTTTTTTTTTTTTTTTCTTCCCCCACTTTTTTTTCTCCCGGGGGGGGGTTTTTTTCTCTTCGCCCTCCTCCTCCAAAGAAAGAGACTTTATTATT | |||||||||
gi|29628617|gb|CB633628.1|CB633628 OSIIEb12J11.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb12J11 3', mRNA sequence TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): ACAACTCCCTGCAATCCGAAGACCTCTTAACCCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTACATGAGGTTTTACTTTTTCTATTGTAAATTTGTTACCTAGGTAATATGAGGTACCAAATTTTACATTAAATTTTTGGTAACTCATGGAACCTCCTCAAGCACTGTAAAATTGCTCTTTTTAATAGAAGGGCATGGAGAAAAGGGTAAAGTTTTTGTGACAAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|29635158|gb|CB640167.1|CB640167 OSJNEa13I23.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa13I23 5', mRNA sequence TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): ATACTACGCGTCCGCGAGCGTTGATGATCTGACACGCGAGGAGGGCGTTGCCGTGCGGTAACGACAAGATCGATTCTGGATAGCGTCATGGTCTCATGGATTCTTAAATTAAATAAAAATGATAGCGTCATGGCGCCGAAAGGTGTTGCCCATTGCCCATTGGTTGCCGGCCCGAGTACAGCTGCGGAATGTTTGACCGGGATCGAGCTGAACTCGGCTCTACTCTCGTATTTGCCGGTGCGGCCGGTTGCTATGTGCGGATAAGAGCAAGTTTAATGAGCAATTCTACTGTGTTTGAGGAGTCCTCATAATTCCTAGGTGTCAAGAGGTATAAAAAAAATGGTACCTCTGATATCTCCTCAAGGACATAAAATTACTCAAGTTTAATAGTATAGCCAACTACTAACTCCAAATCATCAATAGTCAATGTAGTAGCCAACTGATACAATAGTTACATATAAACATATACTACACTTTTAATAGCATAGCCAACTGCTGACTCCAAATTATCTATAGTCAACTTAATAGCCAATTCATAACAATAGTTACAATTAATACTAGTCCCACATGTCATACGCACATGTATCTTGGAGTTCGTGCT | |||||||||
gi|86896154|gb|CI330099.1|CI330099 CI330099 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): GGTACCAAAAATTTGAGCAATTTTACGATCTTTGAGAAGGTACTATGAAGTACCAAATTGTACTATTTGGTACCTCATAGTACCTAGATACTAAGTGATACCAAATTTACAATATAAAAATTGGTATCTCATAGTATCTCCTTAAGGACTATATAACAAAACATATTTAAAAGCACATACCAATATGTCAAGCTTGCCAAACTTGTGCTTTATAAAATCAGCCAAGCCAGCGGCGCTGGAAGGCTCAGAAACATCAAACTGATGGAACAGGACCCTCCGATAGCCCGAGCTGACGAAGCGCGGCCGCTGCTCCGGCGCCCCTCTCCTCGCTCCTCGCTGTCAAGACGACGGTGACTCCATTGGCAGCCAGCTGCTTGAATATTTCGAGCCCAAGTCCTTTGTTCCCTCCTGTCACCACTGGAACCCTTTTCTCGGCCGGGAAGGA | |||||||||
gi|86862539|gb|CI345585.1|CI345585 CI345585 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): GGTGGGAGAATCACATGACTTTTATGTGGGGGTTATGTTAGCTTTTGGATGGTAGCATTTGGTACCATGAGATACCATTTTTTCTATTATAAATTTGATACCTCTTGGTATCTAAATACTATAAGGTACCATGAGATACTAATTTTTACACTAAATTTTTAGTACCTCATAGTATCTACTCAAGGACCGTAGAGATGGTGTTTTGCTTTTGCTCTCTCTCTCTCTCTTTTCTTTTCGCCTCCTTCAGATCTCTTTCTGCACAAGCGTGATTTCCACCTGCTCAGGACAGAACCCCCACCACCGCCCTGGCGGCTCTGCCTCTGCCTCCTTCACTTCACTTCATTTCTCTCTCTCTTAATTTTTTTTACTCAGAAATGGCAGTTTGGAATACGATAAGTTTAAAATTTTACATGAATTTTGTAGTGTTCTAATTAACTTTTCTTTTTGCCAAAGTAGGGGGAAAGATAAATGTTGTGCAGTGAACTGACCTAGCTCTAATT | |||||||||
gi|29656549|gb|CB652824.1|CB652824 OSJNEc03D18.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc03D18 3', mRNA sequence TCCTTGAGGAGGTACCATGAGGTAC EST sequence (targeted fragment marked with yellow): TCAAGTCCGACGTGTTCAGCTTCGGCGTCATGGTGCTGGAGATCGTGACGGGGAAGAAGAACAACGACTGCTACAACTCCCTGCAATCCGAAGACCTCTTAACCCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTACATGAGGTTTTACTTTTTCTATTGTAAATTTGTTACCTAGGTAATATGAGGTACCAAATTTTACATTAAATTTTTGGTAACTCATGGAACCTCCTCAAGCACTGTAAAATTGCTCTTTTTAATAGAAGCGCATGGAGAAAAGGGTAAAAAG | |||||||||