| mature miRNA: TCGGACCAGGCTTCAATCCC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86493880|gb|CI136513.1|CI136513 CI136513 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): ACCACCAACACATTTGGCTTCGATTTCATTTCTGAAAATTTTGTTGTAGAGTCCATCAGGCTCCTTCGAAACATACAGAACTTCACCACATTCTATAAACTATAACAACAGCACTGAGTCACTAATAAAAGTTGGAACTCTGTCTATGGGGAATCAATTCAGGTACTGAGAATGAGCAGCTGCAATCAGGGCAGCTCCAAGGCCAGACCCGTCGTTTGCAAGCTTGACAGCCACCGACTTCGACGCCTCTTCTCCGAGCAACTCCGTCAGCGTGGTCTCCAGGCACTGCCGGAATTCGGTGTAATGTTCATATAGACCGCCATCGATGGCGATGACCGACTTTCGCTTGTCGCCTGGGACGCCTCTGCCGATCTTCCTGAGGATCCCTACGATCCCAGCAGCAGCCAGCCGGGCTGATCTTCGGGTGACGATGTCACAGATTTCGACAACCATCTTCCTTGTTTCTAAGGATGTGTCTGTGATCTTCAGGTTATCTGCAAGTTTTTCAGCCACAATTCTGAGATCAGGTGTTCCATCATGATGCATCACGGAAATATCAGGAGTCCTCAGAATAAAGCGGGTTTTGAGCTTGGTCTGATC | |||||||||
gi|58675209|gb|CK063896.1|CK063896 72184rsicem_3602.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): CACGAGGGCTACATGCGGACTCAACTGCACAATCCTTCTGCAGCCACCACAGATACAAGCTGTGAGTCTGTGGTGACAAGTGGTCAGCACCATCAACAGCAAAACCCAGCAGTTCTGCATCCGCAAAGGGATGCGAACAACCCAGCAGGTCTTCTCGCTATTGCTGAGGAGACCTTGGCAGAGTTCATGTCGAAGGCGACAGGAACTGCTGTCGAATGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGGTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCGTCGATATCATCCATGTTATCCCTACGGGTAACGGCGGAACCATTGAGCTAATCTACATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTGATCTGTGAAAGGTCATT | |||||||||
gi|58665470|gb|CK054156.1|CK054156 64145rsicek_9726.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): GCACGAGGGAGAATGACAGGCTGCAGAAGCAGGTGTCCCGCCTCGTTTACGAGAACGGGTACATGCGGCAGCAGCTCCATAATCCTTCTGTGGCAACTACAGACACGAGCTGTGAGTCTGTGGTTACAAGTGGTCAACACCACCAACAGCAAAACCCAGCAGCCACGCGTCCGCAAAGGGACGCGAACAACCCAGCTGGTCTACTCGCTATAGCTGAGGAGACCTTGGCAGAGTTCCTGTCGAAAGCGACGGGTACTGCTGTCGATTGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGTAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGGTTGCTGAGATCCTTAAGGATCGCCCATCTTGGTATCGCGATTGCCGGTGTGTGGATGTGCTCCATGTTATCCCTACGGGTAATGGTGGAACTATTGAGCTTATCTACATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGTGACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTGATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCC | |||||||||
gi|88430842|gb|CI571832.1|CI571832 CI571832 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): GATGGCCTCCTCCCTCACGCCCCGTAGCCCTTACCCGAAGAAGGAGAACTTGGGCAACGCGCGGCGGGGGATGGGGGTCAAGCCTGGCCCGAGCCGCAATGTCCTCTCGGCAATCAACAATGGCGGTGGAACGAACAGCGATACGGCGTCGGTGGACGGCGGCGAGGGCGGGGCTGGGCCGGCGGCGCCTGTGATCGAGTTCACCGGGAGGGAGGATGTGGAGCGGGTGCTCGCAGAGAAGATGAAGGGGAAGAGCAAGAACGAATACAAGGGGAGAACTGACCAGATGAGTGAGTACATCAAGAAGCTGAGAGCTTGCATCAGGTGGTACATTGAGTTGGAGGACGGCTAATTGGTCGAGCAGGAGAATTCCGTATTACGATGGATGTAGAGAATGCCCAGCACGCCAAGTTGGAGGC | |||||||||
gi|29616817|gb|CB621829.1|CB621829 OSIIEa07P15.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa07P15 5', mRNA sequence TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): ACGAGGCATGCGCGCCCTCCAAGCGGCGCCTTCCGGAGTGGCACCTCGGCGTGGCCGACGGGGACCCGGTACCAGCGCGAGCCTTCGAGAACTTCCCGCACCACCCGCCTCCACCACGCACTCGTCAAGGCCGCGAGCCAGAGCGCATCGACGACCGCGACGACCGTCGCCGAAGAGCCAAAGATGATCGTGACCGGAGCCGTCCCAGGCGGTCGTATAATGACGACCACCCGGACCACGACAGGGACCAAGCCTGGCGACGGCACGACGACGACGACGACCGCGACGGCAGGGGCGGCCGGGGCCGCGAGGCATGGCGAGGACGAGAAAGCCGCAAAGTCTCGGGCCTTGATGGCCAACGCGTGCGCGAGCGTTCGCCGCGTCGGCGCGACTGGGCAGAGGACGACCGTCGCGGTGACCGGCGTCATCACGTGCAGGCTGCTGTCGCCCTGCCTGCTACAATCCCGCCTCTCAAGCTCGCTCCGAAGCAGGTAACTGATTTTAAGATGTTGTTTTCCCTTAACTCCCACCCTCTTCAGGCACCAAGGGAAAACCTCCGTGAGACGGGGGAAAGGCTTGTGAACAGGGTGAACAATTTCGCCGCTGCGGTGGATGACGCTTCTCAGCCTGGCGGGGAAGAAGCCTGGTCCGACCGCCGGCCAAGTCGCGTCCATGACGTCCCGATCCGGCAGGTGTTCGACCGGCTCAAGCACTGCCTCTTCCCTGCTGGCATCCACTCTACACCAAGCCACTCGGGCCAAGTGATGCCTCATGA | |||||||||
gi|38478097|gb|CF962230.1|CF962230 8603rsiced_12250.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): CTCCAACTTCCTCTGTGACTGAAGCCTGGTTCGGACGTGAAGATCACGGGGCCAGTGGGGAAGGAGATGCTGATGCCCAAGGACCCCAACGCCACCATCATCATGCTGGGCACCGGCACCGGCATCGCGCCCTTCAGGTCCTTCCTGTGGAAGATGTTCTTCGAGGAGCACGACGACTACAGGTTCAACGGCCTGGCGTGGCTCTTCCTCGGGGTGCCCACCAGGAGCACGCTGCTGTACAGGGAGGAGTTCGAGCGGATGAAGGAGATCGCGCCGGAGAGGTTCCGGCTGGACTTCGCGGTGAGCCGGGAGCAGACGAACGCGGCGGGGGAGAAGATGTACATCCAGACGCGGATGGCGGAGTACAAGGACGAGCTGTGGGAGCTGCTCAAGAAGGACAACACCTACGTCTACATGTGCGGCCTCAAGGGCATGGAGAAAGGCATCGACGACATCATGATCGACCTCGCTGCAAAAGACGGCATCGACTGGCTTGACTACAAGAAGCAGCTGAAGAAGTCGGAGCAATGGAATGTGGAAGTCTACTGATGGATATATATATGTTAATAATTAATTAATCCCTTTTTATCTCGATGCATGCGCA | |||||||||
gi|38479027|gb|CF963160.1|CF963160 7912rsiced_11314.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): CTGCAGGCAACTTCCTCGTGACTGAAGCCTGGTTCGGACGTGAAGATCACGGGGCCAGTGGGGAAGGAGATGCTGAGGGNCCAAGGACCCCAACGCCACCATCATCATGCTGGGCACCGGCACCGGCATCGCGCCCTTCAGGTCCTTCCTGTGGAAGATGTTCTTCGAGGAGCACGACGACTACAGGTTCAACGGCCTGGCGTGGCTCTTCCTCGGGGTGCCCAGGGGCAGCACGCTGCTGTACAGGGAGGAGTTCGAGCGGATGAAGGAGATCGCGCCGGAGAGGTTCCGGCTGGACTTCGCGGTGAGCCGGGAGCAGACGAACGCGGCGGGGGAGAAGATGTACATCCAGACGCGGATGGCGGAGTACAAGGACGAGCTGTGGGAGCTGCTCAAGAAGGACAACACCTACGTCTACATGTGCGGCCTCAAGGGCATGGAGAAAGGCATCGACGACATCATGATCGACCTCGCTGCAAAAGACGGGATCGACTGGCTTGACTACAAGAAGCAGCTGAAGAAGTCGGAGCAATGGAATGTGGAAGTCTACTGATGGATATATATATGTTAATAATTAATTAATCCCTTTTTATCTCGAT | |||||||||
gi|117220544|gb|CT858879.1|CT858879 CT858879 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): ATGAGATTCCGGAGTTGAAGCCGGTGCCGAAGCATCGATTGAGTGACGAGATTGAAAAGGTCGTGCAAGAGCATTTAAAATATGATTTGCTTGATGACCTAAATTCAAACACTTGGGAGTTGTTGTGCGCCGATGGCGAAATGAAAGTCTATCGAAGAGAGCTCGAAGAGAACGGAATTGTTTTAGATCCTTTGAAAGCCGTCCATTTAGTCAAAGGCATCACAGGCCACGAACTATGCAAATACTTTTGGGAGCCGTCGGTTCGCATGGAATGGGAAGGAACTCTGGACAGCTCAAGAATGATTGAGGCCTTGTCCGACGACACTCTCATATTTCATCAAGTGCACAAGAGAGTGTGGCCGTCGGCTCAGCGCGACACCTGCTTCTGGTCCCACATTCGCCACTTTCCCAAAAACAACGACCCCAAAAACAGCCACAAGGACGACATTCCCGACTGGATAGTCACAAATCATTCCACACAGCACGAGCAAGCGCCGCCCAAGGACCCTGTGATTAGAGCGTGGGCCAATGTGGCCATGATTTGCTCCACCGAATCATCGACAAGCACAAGTATCCGAATTTGGAGAAGGTGCCGCGCGAGAACGTGCATTGCAGATTGTCTACGTGGCTCAAGTGAATCCCGGGCGGTGGGCGCCCGCAAATGTGCTCAAAAGCTGTTACCAGCGAGAGTATCCCCAGGTTTTTGAAGAGATTCACGCCGGTCCTTAATAAAACAAACCAAAGAACCTTGCCCGGTTTTTGGTAAGCCTCTCTTTTTTTTTTCTTTCTTTATTTTTCTTGGCCTCTGGTCTTCTTCCTTTTTTTTTTATTATTTCTTTAATTTCTTATAACACCAAAAAGGTAATTTTTAGTTTTTATTTATTGAATATTTTCGAAAACCAATACATTATTTTTTTTTTATGAATTTTTAAATTTGAAAGTTTTTTTTTAAAAAGAAAAATAATTCCTTGAAAAAAAAAAAAGAAATAAAAAAAAAAAAAATATTTTTTTAAAAAATTTTAAAAATTTTTTTTATTTTTTTTTTGTTTTTTTTTTTTTAAAAAAATAATTTTTTTTTATTTAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAA | |||||||||
gi|29642722|gb|CB647729.1|CB647729 OSJNEb10M12.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb10M12 5', mRNA sequence TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): CCCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGGAAATTGACGGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTACTGGTACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGTATTGTGGCCATTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAACTTGTCTACACACAGTTGTATGCTCCAACAACTTTAGTTCCTGCACGAGATTTTTGGACGTTACGGTACACAACCACAATGGAAGATGGCAGTCTTGTGGTCTGTG | |||||||||
gi|87036051|gb|CI189498.1|CI189498 CI189498 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group TCGGACCAGGCTTCAATCCC EST sequence (targeted fragment marked with yellow): AAACCAAAGGACATCATTTATTATAAGGTTGTTGGCTCAAAGCCTAAACATGATAAAAATAAACAAAGTAAGATAACAACTTATTCATGGAGAACCCCTCCATATTTTAAACCTGAACAGCATGAAAGAATGGCCGCGATCAAGCAGAAAATGGGAAAGAAGGCAGCCGAGCTCCAGGCCTTCCTGGTGTGGTCGAGGAAGCCTGCCTTGCATGAATCGCACTGGAAGCAGAGCTTTTGTTGGTCGTTGCTCCACCTGCTGCAGTCGACGTTGTTTGTTGCTGCTGCTGGTGTTGGTGTCCACGTCGTCCCGTTGACATATGTGAATCCACACGATGATGGTGGCTTGCAGCATCCAGACTGGATAGGTGACATGTCGACGTGCCGGCGGCCGCCGTCGGGGACGAACAAGCCGGAGTGTGGGTCACGGACCAGTTTCGTCATGGCCTTGCACCCGGCGCCCCTGTCGCCGCGGAGGCAGGCGCTGGTTGTTGCCCAGTACGCGGCGTCGTCCACACGAGCCCTGAGCCACCCGCTCTTGTAGTCGTCCAGATTGTACTCGCGTGCCTTCACATCGCTGAGGTCGATGCCTGGTCCGATGGCCACGTAACCGAAGATGATGAAGCCGATGAGGGCGAGGATGGCGATGAA | |||||||||