| mature miRNA: TCGGACCAGGCTTCATTCCTC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29616817|gb|CB621829.1|CB621829 OSIIEa07P15.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa07P15 5', mRNA sequence TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): ACGAGGCATGCGCGCCCTCCAAGCGGCGCCTTCCGGAGTGGCACCTCGGCGTGGCCGACGGGGACCCGGTACCAGCGCGAGCCTTCGAGAACTTCCCGCACCACCCGCCTCCACCACGCACTCGTCAAGGCCGCGAGCCAGAGCGCATCGACGACCGCGACGACCGTCGCCGAAGAGCCAAAGATGATCGTGACCGGAGCCGTCCCAGGCGGTCGTATAATGACGACCACCCGGACCACGACAGGGACCAAGCCTGGCGACGGCACGACGACGACGACGACCGCGACGGCAGGGGCGGCCGGGGCCGCGAGGCATGGCGAGGACGAGAAAGCCGCAAAGTCTCGGGCCTTGATGGCCAACGCGTGCGCGAGCGTTCGCCGCGTCGGCGCGACTGGGCAGAGGACGACCGTCGCGGTGACCGGCGTCATCACGTGCAGGCTGCTGTCGCCCTGCCTGCTACAATCCCGCCTCTCAAGCTCGCTCCGAAGCAGGTAACTGATTTTAAGATGTTGTTTTCCCTTAACTCCCACCCTCTTCAGGCACCAAGGGAAAACCTCCGTGAGACGGGGGAAAGGCTTGTGAACAGGGTGAACAATTTCGCCGCTGCGGTGGATGACGCTTCTCAGCCTGGCGGGGAAGAAGCCTGGTCCGACCGCCGGCCAAGTCGCGTCCATGACGTCCCGATCCGGCAGGTGTTCGACCGGCTCAAGCACTGCCTCTTCCCTGCTGGCATCCACTCTACACCAAGCCACTCGGGCCAAGTGATGCCTCATGA | |||||||||
gi|88575279|gb|CI669424.1|CI669424 CI669424 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated(45Gy), immi TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCGGCTCAGAGCACACAGCTCCACCAACCTCACACGGCCTCAGGCCTCAGCCTCCAAAGGGGAGACAGGAGAGAAAGCTAACGCTTCTCTCTCTCTCTCGGTTAATTGCCTGTCTGCGTGGGAGTTACCTCCACACAGCGCCGTAAAAGCTTNGAGCGAAACCCCACGCACGTACGCAGGCACGCACACGCGCGCCGGCGGGCGGGAGAAGACCAGAGTGTTCTTATGTTTCAGCTATGACGACCTGCGCGGATGACCAGACGGGCTGCGCCTTCTTCGCCCCCTTGCTGTCCTCCAAGGGGGCGGAGGTCGTCATCTCGGTGGCCGGCGATGAGGCGGAGGAGCAGCAGCCGGCGCCGGTGCTGACGAGCAAGCCGCCGGGTCGGCTCGCCAAGGCGGTGAACGAAGCCTGGTCCGTTTCTTTGGGCGTCG | |||||||||
gi|29642722|gb|CB647729.1|CB647729 OSJNEb10M12.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb10M12 5', mRNA sequence TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): CCCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGGAAATTGACGGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTACTGGTACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGTATTGTGGCCATTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAACTTGTCTACACACAGTTGTATGCTCCAACAACTTTAGTTCCTGCACGAGATTTTTGGACGTTACGGTACACAACCACAATGGAAGATGGCAGTCTTGTGGTCTGTG | |||||||||
gi|88375523|gb|CI681302.1|CI681302 CI681302 Oryza sativa (japonica cultivar-group) whole body 3mM SA(salicylic acid) for 1day Or TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCGGCTCAGAGCACACAGCTCCACCAACCTCACACGGCCTCAGGCCTCAGCCTCCAAAGGGGAGACAGGAGAGAAAGCTAACGCTTCTCTCTCTCTCTCGGTTAATTGCCTGTCTGCGTGGGAGTTACCTCCACACAGNGCCGTAAAAGCTTCGAGCGAAACCCCACGCACGTACGCAGGCACGCACACGCGCGCCGGCGGGCGGGAGAAGACCAGAGTGTTCTTCTGTTTCAGCTATGACGACCTGCGCGGATGAACAGACGGGCTGCGCCTTCTTCGCCCCCTTGCTGTCCTCCAAGGGGGCGGAGGTCGTCATCTTGGTGGCCGGCGATGAGGCGGAGGAGCAGCAGCCGGCGCCGGTGCTGACGAGCAAGCCGCCGGGTCGGCTCGCCCAGGCGGTGAACGAAGCCTGGTCCGTTTCTTTGGGCGTCGC | |||||||||
gi|58675209|gb|CK063896.1|CK063896 72184rsicem_3602.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): CACGAGGGCTACATGCGGACTCAACTGCACAATCCTTCTGCAGCCACCACAGATACAAGCTGTGAGTCTGTGGTGACAAGTGGTCAGCACCATCAACAGCAAAACCCAGCAGTTCTGCATCCGCAAAGGGATGCGAACAACCCAGCAGGTCTTCTCGCTATTGCTGAGGAGACCTTGGCAGAGTTCATGTCGAAGGCGACAGGAACTGCTGTCGAATGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGGTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCGTCGATATCATCCATGTTATCCCTACGGGTAACGGCGGAACCATTGAGCTAATCTACATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTGATCTGTGAAAGGTCATT | |||||||||
gi|88569733|gb|CI660908.1|CI660908 CI660908 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, 24hr after treat TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GGCCATGTCCGCGTCTGCATCCGCTGTCTGTCTCCTTCCTCCCCGAGGAGGAAGCCTGGCCCGACCCGACACCGCACTCCCCCCAGCCAGCCAGCCAGCCACTGTCGCGGTGAACCAAAATATCCCCCGCCTCGCCTCGCCTCGCCTCGCGGTAACATCCATCACACTCCTCCCCCGCCGCGGCCGCCGCTGCGCGGTAGATCTCCTCCTCCTCCACCTCCACCGTCTCCTGCTCTTCCTCTCTCTCTTCTCGGAGGAAACCCCCAATTTATTCCTTCCCCGCAAACCCGCAGCCTTCCTAAAACGAATTAAATCTCCCTCCCTTATCCGCCGCTGCAATCCCTCCCCACAAAATCTCGCTGCGCCGCGCGCTGTTTTAGGGTTTGAGCTCATGGCGGTGGAGGAGG | |||||||||
gi|88326490|gb|CI659924.1|CI659924 CI659924 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, 24hr after treat TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): AATGTCCGCGTCTGCATCCGCTGTCTGTCTCCTTCCTCCCCGAGGAGGAAGCCTGGCCCGACCCGACACCGAACTCCCCCCAGCCAGCCAGCCAGCCATTGTCGGGGTGAACCAAAATATCCCCCGCCTCGCCTCGCCTCGCCTCGGGGTAACATCAATCAAACTCCTCCCCCGCCGGGGCCGCCGTTGNGCGGTAAATCTCCTCCTCCTCCACCTCCACCGTCTCCTGCTCTTCCTCTCTCTCTTCTCGGAGGAAACCCCCAATTTATTCCTTCCCCGCAAACCCGCAGCCTTCCTAAAACGAATTAAATCTCCCTCCCTTATCCGCCGCTGCAATCCCTCCCCAAAAAATCTCGCTGCGCCGCGCGCTGTTTTAGGGTTTGAGCTCATGGCGGTGGA | |||||||||
gi|88335593|gb|CI642817.1|CI642817 CI642817 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCGGCTCAGAGCACACAGCTCCACCAACCTCACACGGGCTCAGGCCTCAGCCTCCAAAGGGGAGACAGGAGAGAAAGCTAACGCTTCTCTCTCTCTCTCGGTTAATTGCCTGTCTGCGTGGGAGTTACCTCCACACAGCGCCGTAAAAGCTTCGAGCGAAACCCCACGCACGTACGCAGGCACGCACACGCGCGCCGGCGGGCGGGAGAAGACCAGAGTGTTCTTCTGTTTCAGCTATGACGACCTGCGCGGATGACCAGACGGGCTGCGCCTTCTTCGCCCCCTTGCTGTCCTCCAAGGGGGCGGAGGTCGTCATCTTGGTGGCCGGCGATGAGGCGGAGGAGCAGCAGCCGGCGCCGGTGCTGACGAGCAAGCCNGCGGGTCGGCTCGCCAAGGCGGTGAACGAAGCCTGGTCCG | |||||||||
gi|117217800|gb|CT845139.1|CT845139 CT845139 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCGCGGCTCAGAGCACACAACTCCACCAACCTCACACGGCCTCAGGCCTCAGCCTCCAAAGGGGAGACAGGAGAGAAAGCTAACGCTTCTCTCTCTCTCTCGGTTAATTGCCTGTCTGCGTGGGAGTTACCTCCACACAGCGCCGTAAAAGCTTCGAGCGAAACCCCACGCACGTACGCAGGCACGCACACGCGCGCCGGCGGGCGGGAGAAGACCAGAGTGTTCCTCTGTTTCAGCTATGACGACCTGCGCGGATGACCAGACGGGCTGCGCCTTCTTCGCCCCCTTGCTGTCCTCCAAGGGGGCGGAGGTCGTCATCTTGGTGGCCGGCGATGAGGCGGAGGAGCAGCAGCCGGCGCCGGTGCTGACGAGCAAGCCGCCGGGTCGGCTCGCCAAGGCGGTGAACGAAGCCTGGTCCGTTTCTTTGGGCGTCGCGTTCCCGGTGACGCCGTCCATGTTCACCTGCTCGGCACGGGGCGAGGCGCGGTCCATTCTTGGCCTCGCATTCCCGATGATACTGACGGGTTTGCTGCTCTATCTCCGGTCGATGATCTCGATGCTATTCCTTGGTCACCTCGGCGGGCTGGCCCTCGCCGGCGGGTCCCTCGCCATCGGATTCGCCAATATTACCGGCTACTCTGTCCTCTCCGGCCTCGCCATGGGCATGGAGCCGATATGCGGTCAGGCCTTCGGCGCGGGCCATTACGCGCTCCTGGGCGTCA | |||||||||
gi|88578449|gb|CI687382.1|CI687382 CI687382 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCGGCTCAGAGCACACAGCTCCACCAACCTCACACGGCCTCAGGCCTCAGCCTCCAAAGGGGAGACAGGAGAGAAAGCTAACGCTTCTCTCTCTCTCTCGGTTAATTGCCTGTCTGCGTGGGAGTTACCTCCACACAGCGCCGTAAAAGCTTCGAGCGAAACCCCACGCACGTACGCAGGCAGGCACACGCGCGCCGGNGGGCGGGAGAAGAACAGAGTGTTCTTCTGTTTCAGCTATGACGACCTGCGCGGATGACCAGACGGGCTGCGCCTTCTTCGCCCCCTTGCTGTCCTCCAAGGGGGCGGAGGTCCTCATCTTGGTGGCCGGCGATGAGGCGGACGAGCACNAGCCGGCGCCGGTGCTGCACAGCAACCCGCCGGGTCGGCTCGCCAAGGTGGTGAACGAAGCCTGGTCCGTTTCTTTGGGCGTCGTGTTCCCGGTGAAGCCGCCCATGTT | |||||||||
gi|58665470|gb|CK054156.1|CK054156 64145rsicek_9726.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCACGAGGGAGAATGACAGGCTGCAGAAGCAGGTGTCCCGCCTCGTTTACGAGAACGGGTACATGCGGCAGCAGCTCCATAATCCTTCTGTGGCAACTACAGACACGAGCTGTGAGTCTGTGGTTACAAGTGGTCAACACCACCAACAGCAAAACCCAGCAGCCACGCGTCCGCAAAGGGACGCGAACAACCCAGCTGGTCTACTCGCTATAGCTGAGGAGACCTTGGCAGAGTTCCTGTCGAAAGCGACGGGTACTGCTGTCGATTGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGTAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGGTTGCTGAGATCCTTAAGGATCGCCCATCTTGGTATCGCGATTGCCGGTGTGTGGATGTGCTCCATGTTATCCCTACGGGTAATGGTGGAACTATTGAGCTTATCTACATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGTGACTTCTGGATACTCCGTTACACTAGTGGTCTTGAGGATGGAAGTCTTGTGATCTGTGAGAGATCATTGACTCAATCCACTGGTGGCCC | |||||||||
gi|88419617|gb|CI686835.1|CI686835 CI686835 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCGGACCAGGCTTCATTCCTC EST sequence (targeted fragment marked with yellow): GCGGCTCAGAGCACACAGCTCCACCAACCTCACACGGCCTCAGGCCTCAGCCTCCAAAGGGGAGACAGGAGAGAAAGCTAACGCTTCTCTCTCTCTCTCGGTTAATTGCCTGTCTGCGTGGGAGTTACCTCCACACAGCGCCGTAAAAGCTTCGAGCGAAACCCCACGCACGTACGCAGGCACGCACACGCGCGCCGGCGGGCGGGAGAAGACCAGAGTGTTCTTCTGTTTCAGCTATGACGACCTGCGCGGATGACCAGACGGGCTGCGCCTTCTTCGCCCCCTTGCTGTCCTCCAAGGGGGCGGAGGTCGTCATCTTGGTGGCCGGCGATGAGGCGGAGGAGCAGCAGCCGGCGCCGGTGCTGACGAGCAAGCCGNCGGGTCGGCTCGCCAAGGCGGTGAACGAAGCCTGGTCCGT | |||||||||