miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|58677053|gb|CK065740.1|CK065740 76975rsicem_6504.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr

TGACAGAAGAGAGTGAGCACA
. ||||||||||||| ||||
GATGTCTTCTCTCACGGGTGT

EST sequence (targeted fragment marked with yellow):
CGGCACGAGGGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAGGTAAGACGAATGTCACAAACTGTAATTGTTACCACGGTACATTACAAAGGTAACAAATTAACACAAAATTGGGGGTACAACCGATTCTCTGAAAGGGCTATGCCAGACACCAAGAGCAAAATGATGTGAACAAATGGAAGGATCAGAATACATATGACTGTATGATCAAAACTAGGGAATTCATCTAGCTAGCTTCCTCCACACGGTGCGCCCACGGTTGATCTCGTTCCCGTTCCCAGCAAATCTTAAGCAGTGCAAGAACTGTCGCTGCTCTTCTGGGTGCGGTGCAGCAAATGCGGATCCATTGGAACTCTTCTCCTCTCCTTCCTCGATATAAGTAAGTGAATCTACTATGTCATCATGTGGGCACTCTCTTCTGTAGTCAAGAGTGATTGTAGGTAACTCATGTGTATCAATAATATCTTGAGGTATACTTTCAAGTACCCAACCAATGTAAGTGACATTATGGACATGTGGGTTCATGTCCAGAT



gi|58680165|gb|CK068852.1|CK068852 67096rsicem_3708.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr

TGACAGAAGAGAGTGAGCACA
||||| ||||||..||. |||
ACTGTGTTCTCTTGCTTCTGT

EST sequence (targeted fragment marked with yellow):
CCATTTCTCCCATTGTGACATGGTATCAGAGCAAAGATCCCCAAAACCTACCACCAAATCCTGTCATCTCGCCGGCGCTCCGGTGGCGGCTTGCCGCCGGCGAGCCATTTTCTCGTCCTCCCGTCATCAGTCGTCGTCTTCAGGTTGCAGCAGTTTTTGCCATCGGTTGTCTTCGTTCTCTTGTGTCAAAGCAGCAGCAGCTGTTTGGGATTCTCTTCGTCAAGCAGTAGCACTAGCAGCAGCAGCAGCAGCAGCAGCAATCGCCTCCTCCAGTTGCCGCCGTCGGCCTAGCCGCTGGCTTCCTCGTCCTGTCATCCATCCGTCGTCCTCTGCGTCTCCTCGTCCTCTGCCGCGTCTTGTCGTCAATCGGCGCCGTCCTCGTCGTCTGTCTCAGATCTGTTCATCGTCGCACTTCGCCGCGGCTCGTCGTCGTCCCCGCATTTCCCTTTGCCGTTGCGGTCTCCGCCCGTCGCGGTGCCTCGCCCACTTCACCACCATCGCAGTCACTGTGGCGGCGCTATTCATCGCTGCCGGCAACGCTCTTCTTCACCATCGCCGGCGGCAACCCTGTCCAGCCGTCGTCCACTGCCGCTTCCATCGTCGATTCCTGCTCCTGCAGCTGCGGCTATATCTAAT



gi|58599831|gb|CK010359.1|CK010359 28709rsicef_5939.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGATTCTTGATCCAGAAGAGCATCGCAGGTTCAGAAGCTTTACGTTGGATTTCTCCTACCCAAGGGTTCCAAGCAGCGTAAGGAATGCATGGCCAGCAATTCAACCAGGCGATCGGATCTCCGGTGGTATCCAGTGGCACAGGAACGTAGCTCCTCATGGTCACTCTAGTGCAGTGGCGGGATATGGTGCCAACACATACAGCGGCCAAGGTAGCTCTTCTTCAGGGCCACCGGTGTTCGCTGGCCCAAATCTCCCTCCAGGTGGATGTCTCGCAGGGGTCGGTGCCGCCACCGACTCGAGCTGTGCTCTCTCTCTTCTGTCAACCCAGC



gi|117252138|gb|CT844319.1|CT844319 CT844319 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
AATCTGTTGGGCGGTCTAATTCTAAATTATTCTCTCCAAATTGCAGGATCATATATATGAATACCTGATATTCTGATGATGCATATGATTTGTGATGATTTTCAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCCGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTACTACTCGTCTGGGGAATGAGCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC



gi|86488035|gb|CI130668.1|CI130668 CI130668 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage and Panicles two

TGACAGAAGAGAGTGAGCACA
||||||||.|||||| |||
ACTGTCTTTTCTCACCAGTGG

EST sequence (targeted fragment marked with yellow):
ACACAAATGCTGTTTCTGTTGCAGATTGTGGAGGAACTTGTGTACATTGTGCATTACTTGCCTTCTGAGATCAATTGTGTCTTCTACAAGGAACATGAAGAGGATAGATCTGTGAAGGCTAATGGGAGCCCTCAGCAAACTTTAGGGTCTGCTGATCTCCAGCTGAATTACGCAAGGATCGTTATCGCCATACAAGTTTTGGTAAGATTCTTTGACAGTCATTAGGCCATTGTTCTAGGATCTTGGTCATTGATCAAGTGTAGTCGTGCATGATATAAACATATTTCCGGTTTTCAGTTGATTTGGCACACTAACTGAAATGTCGAAACTGATTTTATTTGTTCATAAAGTTTCAATCGCAGGTATCCGTCGCATCATCGGTTCCGCAATGTGCTGTAGATTCATTGTTCCATGCACTGCCTTATAGAATCAGATCAGTTTTGCTACCTAGGATGAGACACGGCGATTTTGACGACCAGGTGACCACTCTTTTCTGTCAATTCCGATTACCTGACAA



gi|44671936|gb|CR285370.1|CR285370 CR285370 Oryza sativa library (Han B) Oryza sativa cDNA clone p648f11p3, mRNA sequence

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTTTTGAGCAAAATACTTTTGATTCAACAGAAAGAGATCCAATCTATGATGTTTGGCAGTACCAAATTCAGGACATGAAAAGCAAAAGGGAGAAATTTTATAGTCTCAACAACATGAACTGTAGCCAAATAACAGATAGGCTGCCAACATGGTGGCCAAAGGAACGGAGATATTGTCATCCACAACATCATTGACAGGAATACACTCCACTACAGTAGCTGCTAATGCAACAAGAGCCAGTTTACCAAGTGCCAGATCCCAGCAGACAGTGAAGTAACCAAGGCAAGAGAAGTAGAACAGCATCAGTGCAGATAGAAGGAAGCCAGAAATGAACATTGAGATGCTTCCTATCCAGCTCTTGTTCTCATTGAATGGCAGCTTCGCGGAGCCATACCTTCTCCCAACAATGTCAGCAAAGCCACCACCACCACCAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCAATGGCCAAGATACTTCATTTTTGCGCCCCA



gi|88349886|gb|CI634421.1|CI634421 CI634421 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
GGACAGAAACAAACACGAGTACAGAGTTCAGAACAGAACTGAAGATGATAAATTCAGAGCCCCCCCAAAAAGTGTCCCTTTTAATCTGTTGGGCAGTCTAATTCTAAATTATTCTCTCCAAATTGCAGGATCATATATATGAATACCTGATATTCTGATGATGCATATGATTTGTGATGATTTTCAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGNGGCCCGGCCGANGTTCAGGCCGG



gi|38479620|gb|CF963715.1|CF963715 8914rsiced_12594.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||
ACTGTCTTCTCTCTCTCGTAC

EST sequence (targeted fragment marked with yellow):
GTGGATCCCCCGGGCTGCAGGTGACCGTCCTAAGCAGATGCAAGGCAACAGGCAAGTTTTCTATTGGGTCAAGCTCCTTATGGTCAGATGGGAAGCGGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGACATTGACGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGG



gi|66921319|gb|CX108167.1|CX108167 BI147M13 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TGACAGAAGAGAGTGAGCACA
.||||.||||||| .|| |||
GCTGTTTTCTCTCTTTCTTGT

EST sequence (targeted fragment marked with yellow):
TCGCGTCAGGTCGGTCGGAATCCCGGTGTGACCACGCGGTCGGAGATGGTATCAGATGATGGTGGGCCTATAGATTTCACAATGAGCACATCTGATTATGTAATGTCCTTGTGCCCTGGAGGGTCAACAAACAGCAGGGATAAGAACAAAAGCCATGCAATAAGGGAAATGCTTAAACTGCCATTGGAAGAGCGCCTGAAGAAATGGTTTACCGAGGTTTCACAAGTGAATCGATTTGATGCTCTGATGCATCTTGCTCCACTCTATTCAGAGGATGATGTTCTCAAAGTGCTTCCAGTGTATGCGGATTTGGTGCGTGGTTTGTGGGTCTGCAAAAGTTCTTTACTGTTTGATGATGGATATGCTTGGAAAAGAGATAGAATTCTTCTTGAATTTAGGAAAAAGGATTCCATCCCTTTGAAGGACATACACAGAATTATTAAGGTTAAGTTAGATGATAACCTAAAGAAAAAGTTTCTATATCCATTGTGTAAAATAAGGGCAAAACTTGAAGACTGCAAATTTGTATTACCAGTGGATTCTTCCTTCATAAGACGCTATCCCCATATAGTCAATGAGCAAGATCATGCTTGGTCTGTACGTGAGAACAACTATGCGTGAATCTTCAAGAGACATCCAGCAATACTGAGGGCAGGAAAACCAAGAACCACACCAATTCTAACATTTCCTTCANAAGGGCCTGATCCAGTTTGTACAGGCCAGGATGTGCCGTGCAGGAATTAACCTCGTGGCCCGGTCCGGTNCATTTCCTGCCACAAGTCCGGGTTAGGCATCGTAAACTTAGCGTGGAGAATTGCTTGGAAGTGGCAATGGGCTCGACGGGAAGGGCTCCTTATCAAAGAAACAGTGCCTGGTGTTGGCACGAAGAATATCTCGCACGCACTTCCTGTCTTTGTTCTTTCTCTCTTTTGTCGGACAGAAGTAGAAAAGGAGAGGAACGAGAGGAGAAAAGCCAA



gi|58596841|gb|CK007369.1|CK007369 31219sicef_2436.z1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica Gr

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||
ACTGTCTTCTCTCCCTCGTAC

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGCACTCCAAGGAGCCCGTCGTCCTCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGAGCTGACGGAGTTCGACGACGCGAAGAGGAGCTGCCGGCGGCGGCTGGCCGGGCACAACGACGCGGCGCCGGAAGATGCGCGGCGGACACGGCGCACGGCGAGAACTGCCGCCACGCCGACCAGGACGCCGGCCGGATGCCACCAGGGCACCGGGAACCCGCCGTTCCAGATCAGATAAACCTACCTAAGCATGCTCCCTCTCTTCTGTCATGCAGCCATGCTAGTGTGAGTGTGTGTGTACGTGCCACTACTACTACTACATGTCTACATCGATCTATCTACCTATATATATCCACCACCTACGTCCCTTCTTCCTCAAATCAATCAACTCTATCTATCTATCTATTTATCTATCCCTGAATCTATCTCTATCCGGTGTGCT



gi|87021511|gb|CI274118.1|CI274118 CI274118 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

TGACAGAAGAGAGTGAGCACA
||||||||.|||||| |||
ACTGTCTTTTCTCACCAGTGG

EST sequence (targeted fragment marked with yellow):
TTTTTTTAATGTTTATCACATTTTTCAATAACGAATTTATGTTAAATACACAAATGCTGTTTCTGTTGCAGATTGTGGAGGAACTTGTGTACATTGTGCATTACTTGCCTTCTGAGATCAGTTGTGTCTTCTACAAGGAACATGAAGAGGATAGATCTGTGAAGGCTAATGGGAGCCCTCAGCAAACTTTAGGGTCTGCTGACCTCCAGCTGAATTACGCAAGGATCGTTATCGCCATACAAGTTTTGGTAAGATTCTTTGACAGTCATTAGGCCATTGTTCTAGGATCTTGGTCATTGATCAAGTGTAGTCGTGCATGATATAAACATATTTCCGGTTTTCAGTTGATTTGGCACACTAACTGAAATGTCGAAACTGATTTTATTTGTTCATAAAGTTTCAATCGCAGGTATCCGTCGCATCATCGGTTCCGCAATGTGCTGTAGATTCATTGTTCCATGCACTGCCTTATAGAATCAGATCAGTTTTGCTACCTAGGATGAGACACGGCGATTTTGACGACCAGGTGACCACTCTTTTCTGTCAATTCCGATTACCTGACAAAAATGTGTATCCTGTATATACTGTTCATCTTCATTT



gi|58674377|gb|CK063063.1|CK063063 54169rsicek_2301.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGTGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCTGCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTTCGTTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTATAAA



gi|58686075|gb|CK074762.1|CK074762 69454rsicem_14759.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
CACGAGGAGTGATCACCATGCGTTCAGCAGCCATGGTGGCTCAGCGGCTGGGGCACCAATGCTCCACCACCCTGCCTTTGAGCTCACCTCAGGTGGATGTCTCGCGGGAGTCGCCACCGACTCCAGCTGTGCTCTCTCTCTTCTGTCAACTCAGCCATGGGATACTACCCAAAGCACCAGCAGCCACAACCGGTCCCCGCCAATGTCGTCAACGGCCAGCGCCTTCGGAGGCGGCAACAACCCGGTGTCGCCCTCGGTCATGGCAAGCAACTACATGGCGGCGAGCCCCGGCTGGAACAGCTCCAGCCGGGGCCATGACGGCGCCAGGAACGTGCACCTGCCGCCACCGCACGGGGTTGTGCTGAACGAGGTCCCTCCGGGCTCTGTCCACCACGGCCATTTCT



gi|58678400|gb|CK067087.1|CK067087 66867rsicem_25821.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||
ACTGTCTTCTCTCCCTCGTAC

EST sequence (targeted fragment marked with yellow):
CACGAGGGAGTTCGACGACGCGAAGAGGAGCTGCCGGCGGCGGCTGGCCGGGCACAACGAGCGGCGCCGGAAGAGCGCGGCGGACACGGCGCACGGCGAGAACTGCCGCCACGCCGACCAGGACGCCGGCCGGAGCCACCAGGGCACCGGGAACCCGCCGTTCCAGATCAGATAAACCTACCTAAGCATGCTCCCTCTCTTCTGTCATGCAGCCATGCTAGTGTGAGTGTGTGTGTTCGTGCCACTACTACTACTACATGTCTACATCGATCTATCTACCTATATATATCCACCACCTACGTCCCTTCTTCCTCAAATCAATCAAATCTATCTATCTATCTATTTATCTATCCCTGAATCTATCTCTATCCGGTGTGCTTTGCTGCTGCTGATTAACTGGCAGTGTGATCATCTCCCTCTACTGCTGCTACATATATGCAGTGCTATGCTGGAGAGGCATAAATGTGCTATATATATGTTCTCTGCCACAACCCTAAGCTAATTGTAACCTGTTGATTAAGCAGGTGTTCTAGGGATTCTCTCTCTCTCTCTCTGTGTGAGGGTGTGTCTGATGTGTAATTGTACTATTGCCTTTGCCCAACAGAAACTTGTAGGCTGCAGTGTGCCTATGTATGCTGTTGTGCCGGGATGGCAGT



gi|58655060|gb|CK043740.1|CK043740 43023rsiceh_10157.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
GCACGAGGGAGAGAGAGACATACTACACGCACCACCAAATCCCTCTTGGCATCAGCAGCAGGCAGGCAGCATTTCGTTGGCTCCACCTCTGACGGCGGCCGCCGCTTCCCTTTCCTCCAGGAAGGCGAGATCAGCTTCGGCAACGGCGCCGGCGCCGGCGGCGTGCCAATGGATCAGGCAGCAGCTGCTGCTGCTGCTTCAGTGTGCCAGGCACTTCTGAAGACGGTAGCTCCTCCTCCTCCTCCTCATGGCGGCGGCGGCAGCGGCGGCGGCAAGATGTTCTCCGATGGTGGGTTGACACAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCAGCTCCGGCGAACTCCACGGCCATCGACGTCGGCGGTGGCCGGGTGGTCGTCCAGCCGACCGAGCACATCCCCATTGCG



gi|117220961|gb|CT845473.1|CT845473 CT845473 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TGACAGAAGAGAGTGAGCACA
||||||||||||..||. |||
ACTGTCTTCTCTTGCTTCTGT

EST sequence (targeted fragment marked with yellow):
GCATGTGCGCAGTTCTCGACTGGATGGACCCGTGCCATTTTTGTTTCTTGGAGAGGCATAGGCATAGATTGATTTTGCCTCGCACTGTCTAGTAGCATGGTCATATTTAGCATTCTATCCTAATGTTTTTTTTTGTTTCTACTACTGTACTACTACATAATATGTAATGGGTCATTTCTTGCATTTTGTTAGTCAAACTACACAGTAAAATCCTCAAAATCCAAATCTTGTATTTCTTGTAGTAAGTTGTAACCAAATCCAAAAACCCTAGCCACCAGATCCTGTCATCGCGGGCGAGCCATTACTATTTACTAGTCGTCTTCAAGTTGAAGCAGTTTTTTTCCATCGTTTGTCTTCGTTCTCTTCTGTCAAAGCAGCAGCAATTGCCTTCAGTTTGCCTCGTCCATCCGTCGTCCCCCACCGCGTCTTGTCGTCTCGTCAATCGGCACCGTCCTCGTCGTCGTCGCCGCGTTTCCCTTCGCCAGTTGCAGCCGCCACCGGCAGCGCTCATCTTCACCATCGCCGGCGGCAACCCCGTCCGCCCATCGTCCCGCGGGCGTCCTTGCACCAAGGCCGTTGCCGCTTCCATCTGTCGATTCCTGCCGCTGCGGCTTTAGCTAATGCCCACATTCTAAGCTGCTGCTATGTGCAGACCTGCTGCTGAGGGCTCATCTATTTGGGATCATTTCAGTGGCTGGCATTGTGTCCAACCCAGCAGCTCCTGTTACTACCATTCTTATCTCTGCTTCTCCTGGCTCTGTTTTCCTTCTGTTGTCTCATGAGGATTTTGTGACACTTTAGTTGTGCACTATGTACTAATAATATTACAGGTTGTGCTTGATAGTGTAAGGAAGATATTGTTTTAGAAAATTTACAATCTTGTTATGTTTTTCTGCTGATATTGATATTAGTATTGATTCCATAGCAAATTCGTGTCGTTTTCCATTCTTAGGCAAATTTAAGACCAGTCTTTTCTGCATAGAGTATGTTCGTCAGCTATCTTTGTAGTCCTTGCATTGCTAGAAGTTCCAGAACATCTGGACATGTGAATAGTAGATTTCCAACATTAGGCACACATTTGTGCT



gi|44666275|gb|CR279709.1|CR279709 CR279709 Oryza sativa library (Han B) Oryza sativa cDNA clone y844d08p5, mRNA sequence

TGACAGAAGAGAGTGAGCACA
.|||||||||||| |||||
GCTGTCTTCTCTCTCTCGTAG

EST sequence (targeted fragment marked with yellow):
GTCTCTTCGTGTATTCTGCATTGTGTGCAGTTCTCTGTCATTCTGTGTTGTGTAGTATACGCTAGATCTACGAGCATAGCACATCTTAGTGATACATGGTCGCGGTGATCCACTGTATTGTTATCTGCTGCGACTGGATCCTGCGTGTTTCGCTCATACGTTCGTCGTCGTAATCATGTCCATGAGCGTGCTCGTAGCTGCTCTGTCACGTCGATACGCGACATCGGTGTGAGAGTATCCTCCATGCCACATGTTGTCTCTTCCGACTAGCTTGCACCAGATGCGCGTACTTCTAGAGCTTGCGTTCGGATCGATCACTACTGCTCTGGGTGCTACTAGTACGACTTGCTGCGATGCTCTCTCTCTTCTGTCGTGTGCGTCGGTGATAGATCTGTTCATTGCCGGGATGCGCCAGTCTAGCTGAGCTGTCGCGTACGTTGGCATGTGACAGTTCGTCGTGAATGCTGCCGTAGTCGACACTCGTGTCCGTCTGACATCAGATCTAGCTAGAGCGCAGCTGAGAACACTCTCGATGCTGTTCTGGTGTGAGTCACTGTTCATAGCTATGCAGATAAGTTTCACTGTCTGAGTCATCGCTCTCGCTATCTCTGCGTCTATGTCTCTGTTATATTGCATTGTAATTTCTGTGCTGTATGTTCGATGTTAGTTCCGTGTCGGATAGATGGTCGATCCTTGAGGAGCGTCTAGTGTCTGCTGTCATCGCTCTCAGCTGCTGGATGTTGCTGATGTGTCGTCAGAGTTGGCTACGTTGATTCACTCTTCGTCAGCTAGGGTTGTGGTCTTGCATATTATGTTGTTGTAGGTCGTCGTAGGTGAGCTGCTATATGA



gi|88348825|gb|CI631912.1|CI631912 CI631912 Oryza sativa (japonica cultivar-group) callus 2ppm ABA(abcisic acid) Oryza sativa Ja

TGACAGAAGAGAGTGAGCACA
|||||||||||||||||| |
ACTGTCTTCTCTCACTCGAGA

EST sequence (targeted fragment marked with yellow):
AGGTGCATGCTGCAGGCAGAGCTCACTCTCTTCTGTCAACTGCCACCCACCAAAACCAAGAAAACAGAAAACCATTAGGTAGACAGACATAGCCACATAGGAGCGAGAGAGCCACTAGCTGCCGGCTGACCGGCCGGCGGCGGAGATGTGCCGCCGGAGTGGGAGAAGAAAGGTGGGCGCTACCTAGCTCAGATCTGTGTGCTTCGATTGATTGGTGGTGTGTGACCATAGCCCGGTGGATGCAGCATTATATATAGAGGGGGGAAGAGACCATGGTTCATAAATCCTTTACCCCATATCTCTCTTTTCCTGCTTCCCTCATGATATGCCATATACGGCTGCTGTTCTAGCTTAGGGTTTGGCCGGCCGCCGCTGGCGTATCCCGGAAAGGATACAATATC



gi|88337573|gb|CI630870.1|CI630870 CI630870 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TGACAGAAGAGAGTGAGCACA
|||||||||||||||||| |
ACTGTCTTCTCTCACTCGAGA

EST sequence (targeted fragment marked with yellow):
GGTGCATGCTGCAGGGAGAGCTCACTCTCTTCTGTCAACTGCCACCACCCAAAACCAAGAAAACAGAAAATCATTAGGTAGACAGANATACCCACATAGGAGCGAGAGAGCCACCTAGCTGCCGGCTGACCGGCCGGCGGCGGAGATGTGCCGCCGGAGTGGGACAAGAAAGGTGGGCGCTACCTAGCTCAGATCTGTGTGCTCTGATTGATTGGTGGTGTGTGACCATAGCCTGCTGGATGCAGCATTATATATAGAGGGGGGAACACACCATGGTTCATAAATCCTTACCCCATATCTCTCTTTCCCTGCTTNTCTCATGATATGCCATATACGGCTGCTGTTCTAGCTTATGGTTTGGCCGGCCGGCGCTGGCGTATTCCGGAAAGGATTAAATATCATGCTAT