| mature miRNA: TGATACCTGATAGGTATCACA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88216005|gb|CI215854.1|CI215854 CI215854 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TGATACCTGATAGGTATCACA EST sequence (targeted fragment marked with yellow): TATCGTGTCTTGAAACTTAACCGGTATCAAGTGATACATATAAAGTATCAAATGATTTCTACCACGTATCGGATGATACTCGTGATATATCATGTGATACCTATCAGATATCAGACGATTTCTACCATGTATTGGGTGATACTCGTGAGGTATCATGTGATACCTATCAGGTATCAGACGATTTCTCCCACGTATCGAGTGATACTTGCGAGGTATCAGATGATACCTACCAGATATCAGGTAATTCCTACTAGGTATCAGGAGCTGAGCACCGAGGCGTCGTTGCCGGCAGCCCCACCCTCCACGCCCCATGTCGGAGGTTGTCGCCGGCGGCCGCGTCCTCTGTCGTCGACGCCTTATGTCAGAGGTCGTCGCCGGCAGCCGTGTCCTTCGTCATCCACGCCCCACGTCGGAGCTCGTCGCCGGTAGCCGCGTCCTTCGCTACCACGCCCCACACCAGGCTTGTTGCTGGCG | |||||||||
gi|29666925|gb|CB663200.1|CB663200 OSJNEd07N24.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd07N24 3', mRNA sequence TGATACCTGATAGGTATCACA EST sequence (targeted fragment marked with yellow): AAAAGTATCGGTGACCTAATAAGGTTGCATAATACATATAGTTATAGTATAACTGGCAGGCATATTGTAATAGTGTTTTGTACGTTGATCACCTAGGGTTTACGTTTCGATATATCTTTTTGCATGGTTGTGTAGATTAGTTTGTACATAGATATTTTCCAAAATTATAATTATGTTTAAGTTAGACTACTCTATATTTAATTATGTCGGTTCTTTAATACTGATCCATAGAAAATAATAGAGGAATGATAGGTATTGCTTAATACCTAGGTACCAGTCGATACCTATCAGGTATCAGCTGATACCTTAGACGTATCATTTCGACCGAACAGGGTACCAGCGGATACCTACCAGGTATCAGGTGATACCTCAGAGGTATTATCTTGTCCGAACGGGATATCGTTCTATAGCATTCTCCAAAAATAATTAACAATAGAATAAATCATCCAACGACCAGATAGTACACTGCTATACAGTAGTAAACCTATTCCTTCCAAAACCACTTCTGAAGGGGCATACAACTTACCGGGAATGGTTTATTGAAAACAACCGCGCGTCTTCAATACTGTTGACAATTACCGTTGCCATATACTGTACTCCGTACCAACCTTTGTCCGATCCGGCAAGGAATATGTGTTTGTAGCTGTTTTTTTCTCTCCAAACAATCGCTAACAGTACTGTTTTTGTCAGTCTTTTTTGTCAAATATTCTCAAATAATGTATCAACATTCCTACCGTGAACATTTGCTCCTCTCGTATTATTACGAGAGTAGGACATGTAGTTCATTACGCGAGATAAACTATTGTACAATATAAACCT | |||||||||
gi|88216005|gb|CI215854.1|CI215854 CI215854 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TGATACCTGATAGGTATCACA EST sequence (targeted fragment marked with yellow): TATCGTGTCTTGAAACTTAACCGGTATCAAGTGATACATATAAAGTATCAAATGATTTCTACCACGTATCGGATGATACTCGTGATATATCATGTGATACCTATCAGATATCAGACGATTTCTACCATGTATTGGGTGATACTCGTGAGGTATCATGTGATACCTATCAGGTATCAGACGATTTCTCCCACGTATCGAGTGATACTTGCGAGGTATCAGATGATACCTACCAGATATCAGGTAATTCCTACTAGGTATCAGGAGCTGAGCACCGAGGCGTCGTTGCCGGCAGCCCCACCCTCCACGCCCCATGTCGGAGGTTGTCGCCGGCGGCCGCGTCCTCTGTCGTCGACGCCTTATGTCAGAGGTCGTCGCCGGCAGCCGTGTCCTTCGTCATCCACGCCCCACGTCGGAGCTCGTCGCCGGTAGCCGCGTCCTTCGCTACCACGCCCCACACCAGGCTTGTTGCTGGCG | |||||||||
gi|117249723|gb|CT863359.1|CT863359 CT863359 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGATACCTGATAGGTATCACA EST sequence (targeted fragment marked with yellow): ATATTATTATTTGTTGATCATGGATAACTAGCGCGAATAAGAAGAAACCCTTAGCACTCCAGGAGTCATCGAAAAATATCAAGTCTCAGCCAAGATTGTCAATGAGGTGTTAGGCAAACTTATCAAAAAGCTAGCAGTAGGTTCCAAGATCTTCGAACTGTGCCTTTGGTCTGATAGCCTTATCTACGAAGAACTTTCCAAGGTCTATAACAAAAAACCTACCTTCAAAGGACTCGCTTTCCCCACCACTATCTCAGTTAATGAAGTTTGTGGTTACAATGCTCCTCTTCAAGAAGACTCCACCTCCATCAAGGAAGGAGATCTTGTCAAATTAGAACTCGGTGCTCACATTGATGGCTTCGCAGCCTTTGCAGCTCATACCCTTGTGGTCCAATCCGACAAGAATGCTCCTATCACTGGCAAGAAGGCTGACGTTATTTTGGCTGCCTACAAGAGCGCACAAGCTGCCCTACGTCTTCTCAAGCCAGGACACACCAATCATTAAGTGACTGATGTTATCCAGAAGATTAGCGATGCCTATCAGGTATCTCCCTTAGAAGGTGTCCTTTCTCACGAACTCAAGAAGCATCTTATTGACGGCAACAAGGTCATTATCAACAAGGAAACCTTTGAACAACGTGTAGATGTTCAAGAGTTTGCAGTTCATGATGTTTTTGCCTTGGACGTCTTCGTTAGCAGTGGATAGGGAAAGCCTAAAGAAAGTGACCTTAGATGCACTGTCTACAAACGTGCCTTAGATCGTTCTTATAACCTCAAAATCAAACAGAGCAGACAGTTCCTTCACGATGTTCTCGATCGTTACCCCTCTTTCCCCTTCAGTCTTAACTC | |||||||||
gi|117229086|gb|CT853690.1|CT853690 CT853690 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGATACCTGATAGGTATCACA EST sequence (targeted fragment marked with yellow): GTACTCGTCGTAGCCACCACACCCCCCACACACCCACACCGCCGGTAGCGAGGCAGCTCACATGGCGGCGACGGCGACGGCGACGGCGGCGCCGGAGGAGGAGGAGGGGAAGAAGGTGATGACGAGGGCGCTGGAGTGGGAAGGGTGCGTGGTGTCGCCGGTGCCGACGGCGACGGCCGACGAGGCGTGGGCTCTGCTGTCGGACTTCCTCGCCTTCCACCGCTGGCACCCACGCGTTGCCAAGTGCCGCCCCGCCTCGCCGGCAGCCGGGGGGAGCGCGGCCGCCGTCCCGCCGGACTCCGCCTTGCGGAACGTGGGGGGCACTCCGCGCGGCGACCGGGGCGCTCCGTACGGGGCGCACGAAACCCTGGTAGATCACACCCTCGCGCGCCGATCCTTCCGGTACGATACTATCAATGGCAACATGGGCGACGGTATTTTGGTTGCCTACAAGAGCGCACAACCTGACCTACGTGGTCTCAACCCAGGACACACCAATCATTAAGTGACTGATGATATCCAGAAGATTAGCGATGCCTATCAGGTATCTGCCTTACAAGGTGTCCTTTCTCACGAACTCAAGAAGCATCTTATTGACGGCAACAAGGTCATTATCAACAAGGAAACCTTTGAACAACGTGTAGATGTTCAAGAGTTTGCAGTTCATGATGTTTTTGCCTTGGACGTCTTCGTTAGCAGTGGATAGGGAAAGCCTAAAGAAAGTGACCTTAGATGCACTGTCTACAAACGTGCCTTAGATCGTTCTTATAACCTCAAAATCAAACAGAGCAGACAGGTCTTCAACGATGTTCTCGATCGTTACCCCTCTTTCCCCTTCAGTCTTAACTTATTCGAAGATCCCATTACTGGTAGAATCGGTATAAAAGAATGCCTTGACCACGAATTACTCGTCCCTTTTCCTTATTCTTGGTGAAAAACCTGGGACTTTTGGAACCCCAATTCAAGGTTACCGGTCTTGAAACCTAAAGGGAAAAACCCCAGCTTTTGAACTGGGGTTCCCACTCGAAGAGAGCCCCCTTTCAAAAAGGGAAGCACAAAAAAAAAAGGGATGAGGGCCTTTTTTTTTAACCCTTTTTACTTTTTTTTTCAAGGGGGCAACAAATTGCAGACCACAAAAGAAGGGGGAAGAAAAAAAAGAGGGGGGAGAAAGGTATAGGGGGCTGTGGTTTTTTTTTTTTTCTTTTTATATTTTTTTATAAACCCCACCAAAAAAAAGACAAAAAAAAAAAAAAAAAAAACTGCGTGGGGGGGGGGGGGGGGGGGCGGCGGGCGGGGGCCCCACACCCTCCTTCTCCCCCCCCCCTTCTCTTTTTACATGAGGTTTTGGTCTGTTTTAC | |||||||||
gi|58598061|gb|CK008589.1|CK008589 29153rsicef_7293.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G TGATACCTGATAGGTATCACA EST sequence (targeted fragment marked with yellow): GCACGAGGCAACGGAAGCCCTTTTTTCGAACGGGATGATACCGGTTAGGTATTAGGTATTATGCGTTTCTACCACGTATCAGGTGATACTTGCAAGGTATCAGATGATATCTATCAGGTACCATGTGATTCTTATCACGTAGAGGGTGATACTTGCGAGGTATCAGGTTCT | |||||||||