| mature miRNA: TGCCTGGCTCCCTGTATGCCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|33803323|gb|CF327535.1|CF327535 NACL--02-B01.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa Japonica Group cDNA clon TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGATCCATGTTTATCAGGTTTAATTAAGCGTGTAATCTTAAGTGAGCACACACAATGAGTCAATGAGAGAGAGATAGAGACAGAGAGAGACGGTCATGCTTGGCTCCTCGCACGCCATCCGCAGTAGAGCCAAACGTACGAACACAATGCCTGAATCTCGCCGGGAGAAGGCAGTTGTTTCAACTGAGTTTGGCAGCTACGCGAGTGGCATACAGGGAGCCAGGCATATCCCCTTTTTTTCACCTCTCTTTTGCTTTTCAGCTTCCAAACCTTCTGCATCCTTGCCAATATGCCATGTATTCCCTTCTTTCAACACTGCAGTGCTCATCTCACACACACACCCCAATGCTAGACTCAAAGCCCAGAACACTTGGAGAAGAGAAGAGAAGACAACAACAACTCCTATATATGTACATCAACACAACTACTACTACTCCACCAAAGCCAAGAGCTCAGCTGGCATGACATTGTGATGGAGATGGCAGCTGGAGAAACAAGAAGAAGAAGAAGAAGAAGAAGAG | |||||||||
gi|86521038|gb|CI161244.1|CI161244 CI161244 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GCAAACTCTTACTTATGTAGCAGTATTTACTTATATGGAGATAGTCGCACAGAGGGAGCCAGGCGCACTTATTTCACTCGTTCCCGCCTAATTACAAAAGCTACAACACACGCGTCGAGGCCAAACTCCCGCATCTCGCTCGCCCGGCAACTTGGATGGCTCACCGCTCACGCACTCGCCACGCCGCTCGTCGCCGCGGAGCGCGTCACACCGCAGCGGCTGCCATCCTCAGGAGCGTCTCCACCGCCTCGTCGCCGCGCCCACGGTGGCTGCGGCGGCGGCGGCGGTCTTCGTCCTCCGATTCCTCGCCGCGGCGGCCGCTCTTCTCCGGGCCGGCGAGGAACGCGGACTCCTGCTGCGCGTTGAGCAGCTCGTCCACCTCCCTCGCGCTCGCCGCGAACGCCAGCTCCTTGGCCTGCGGGTCCAGCTTCTTCAGCACGCTGTTCATCCCGGCGAGGTACATCCTCTCGTTGTTGTTGGCGTGGACGTCGAAGCAGACGATCTGGAGGGTGCTGTCGCGGGACGACGTCACCACGATCGGGTGGCCGGAGGGGACGACGAACACCGTGCCGCGCGACAGCCGCGCACGGATCGTCTCGTACCCCTGGCCGACTTGTTCTTCCTCTTCCTCCTCCTGCCCCTTCTGCTGCTCCTCCTCCTCCTCTTCCTCCTCACGCCACTTGCCCTTGCCGCGCTCGCG | |||||||||
gi|58667037|gb|CK055723.1|CK055723 61088rsicek_4369.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GCACGAGGGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCT | |||||||||
gi|44673103|gb|CR286537.1|CR286537 CR286537 Oryza sativa library (Han B) Oryza sativa cDNA clone y809d09p5, mRNA sequence TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TTGGAGTGGCATGTCGGGGTGAACGCGCCGGGCTATGGCGGCGGGGTTCTCGGCGTTCTGAAGGAGGAGGAGAGTAAGCTGATGAAGGGCCATGGTGGTGGTGGGTACATGAAGGGCAAGGGGAAGGTGAGGATGGCCGATGTCGTGGAGGCCGCTAGCCTCGCGTCGAGCGGGCAGCCGTTCGAGGTGGCGTACTACCCGAGGGCTAGCACCCCGGAGTTTGTCGTGAAGGCCGCGTCGGTGCAGGGCGCAATGAGGATCCAGTGGTGCTCCGGGGATGAGGTTCAAGATGGGTTTCGAGACAGAGGATTCATCAAGGATTAGCTGGTTTATGGGGACAATATCTTCTGTTCAGGTTGCTGATCCCAACAGATGGCCGAATTCGCCGTGGAGACTTCTTCAGGTGACATGGGATGAACCGGACCTGTTGCAGAATGTGAAATGTGTCAGCCCATGGCTTGTGGAGCTTGTGTCAAGTATTCCACCAATCCATTTAGGACCATTTTCGTCACCTCGAAAGAAGTTGCGGGTTCCCCCACATCCTGACTTCCCATTTGAGGGTCATCTTCTGAACCCAATTTTCCATGGGAACCCACTTGGTCCTAGCAACAGCCCACTATGCTGTTACCCGGACAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTTTACAATAACAGAACACAGCTTAACAGCTGCCCTTGGTCTGTACATAG | |||||||||
gi|58664663|gb|CK053349.1|CK053349 60381rsicek_3172.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TCGGCACGAGGTGCACATCTCCAAAGCTCTCTTCTCACCAAACAGACATGTAGTACGAACGCCATTGTTCATCTTGTACTACTTTCTGTGTGTGTGTAGTTGTGTACTGTCTCTTCTTCTTCTTCTTCTTCTTCTTGTTTCTCCAGCTGCCATCTCCATCACAATGTCATGCCAGCTGAGCTCTTGGCTTTGGTGGAGTAGTAGTAGTTGTGTTGATGTACATATATAGGAGTTGTTGTTGTCTTCTCTTCTCTTCTCCAAGTGTTCTGGGCTTTGAGTCTAGCATTGGGGTGTGTGTGTGAGATGAGCACTGCAGTGTTGAAAGAAGGGAATGCATGGCATATTGGCAAGGATGCAGAAGGTTTGGAAGCTGAAAAGCAAAAGAGAGGGGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCTATCTCTCTCTCATTGACTCATTGTGTGTGCTCACTTAAGATTACACGCT | |||||||||
gi|88541178|gb|CI468431.1|CI468431 CI468431 Oryza sativa (japonica cultivar-group) 2nd week immature panicle Oryza sativa Japoni TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGTAGGCACGCGCCAAAAATTATTGTAACTTAGAAGCATTTCAAGACAAAACAAGATGAAACGCATGTGACATGGAGTCCGGGCCTCCTCGGCCAAGCTTGTTACTTAGCAACCTAGCCGATGTAGTACAGGGGGTCAGGCAACTTGAAGGTGCGGGCGCCCTCCGGCGCACCGAGGATGTCGCTCCACTGGTCACCGATGTTACCGACAATGGTGAAACCGGCATCCTCCAGCTTCTGCCGCTCGCCGGACTTGAATGCAACGACAGACCCCAGGAGTTCGCCGGCGGTGTGCACTGCTGGCTTGAGCAACAGCTTCATCCACCCGGAGTATCCCTGCCGGCGAAGGTTTGTGACGGTGATGTTCCTTTCGTCCTCGGTGCGGCTTGTCAAGAACACCGGCTT | |||||||||
gi|58666683|gb|CK055369.1|CK055369 59519rsicek_15769.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CGGCACGAGGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGGCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGCCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCG | |||||||||
gi|117224673|gb|CT860482.1|CT860482 CT860482 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GTCTCCAGCGCTCTCACGCACGACCACCTCGCCTCCTCCTCTCCTCTCCCCTCCCCTCCCCCACCTCGCCTCGCCTCCACGCGCGTGACGCGGCCGGCGACGGCGAGCCGCACGGCGCGTGGGCGTGCCTCGGGGGGGGGGGGGGCTAGCCCTCTCCTCTCGCGGGGGCGGCGGCGGCGGCGGTTGCTGGGCTCATTCCATTCGCCATCCCTCGGGCAGGTCTCGAGGTCGTCTGCGGTAGTCAAGCTGCTGTACGCAGGATAGGGGTTGCGAAGAGGGGAGGTATTCATGGGCGGAGGAAGTTGCAGGGACGATGCAAGGAATTTTTTTTGTCGCGAGAAAGACGGGAAGCGGCAGGAGAGGGAGAGGAGACCCCGGGGGGGGGGGGGGGGGGGGGGGAGAAAAAAAACCCCCACACAATACCTTCATAAACCTCATTTTACAATACCAACAATCCTTAAACAAATAGACCCCTCTCCCTTTAACTAACAATTTTATCATCATAACATGACAACTAATTAAATCATAAGTGATGGGAGAGAGGTGAGTGTGGGGAGGAACGAAGGAGGTGGCTGGGTATATTAAAGTTACAATAGTAGGTGTGAGGAAGCTAGACAGGGGTGGGGCGGGGAGATGAGAAGAGAGAGTAGTAACAACTAAGAGGGTGGGGAGGCGGACCGGGAGTGACTTGACTACCCAAAGAGCTGTGTCTTGGATGTCGCGTGTTAATGGTATTGTAGTGTCTGCGTAGCACACAAGGCACACGGGCAGAAGGATAAGGCGAAAGCGGGAGTGTGAAGGAATTCACCGCTTATACACTAGGTGCGACCCTCGGCGACGCGAGAGGAGGCGAAGCAAACAATGAAGAGAGAATGGTGGAGACAGGGAGCCGGGCAGCGCGGGTGCTCGTTGATGTCGTCTTCCCCTGTATGGGCGAGAGGGGGGGTGCAGGTGAGGGGAGTTGATGCGTCGGGGCATGTATGGGATGATTCAGGACGGAGGTAATACAAAACACTGAAGGAAAAAAGCACGATAAGAAGAGGGCGGAACATAGCGAGGGTAAACATCGGTTGTTTTGCATCCTAATGTGAATGGGACGGATGGAGCAACAAGAAGAAGAATGGAGGGGCAGTGACAAGAAATGGGCCTGAGGGGGAGGTGCGGGGAACGGAGGACATTGGCGGTGAATGGCGTAAGGTCGATATATACTCGTGTGCAGCTGGAGAGTGAATAGCGATACGAGCATAGGGGAGAGCATGAGGCGTGAAGACTCAACCGAACGCTGAGTATGTGACTGGCAGAGAGGATGGAATTGGTTCATTGAAGGATGGTATCGTTTATGTGTGGGCATGTCGATAGTTGCGGATGGATACGTCTAACCTGATGATAATGAGTGTCGATTTTGACATCATGACTCACTGTGCATCACGAATTCGCAGGTACGCGTGGTGTTGGTATGCGGGC | |||||||||
gi|41882789|gb|BX928093.1|BX928093 BX928093 Oryza sativa library (Han B) Oryza sativa cDNA clone y619f08p5, mRNA sequence TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGAATTCGGCCATTATGGCCGGGGGAGGGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGNCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGAATCTCAACTTAAGAAACTGCAGGCGAGTCTATCGGCCCAGGGGGTTTACAGATTGATCAGGGATGGAGCGAAGATTGAGATGGGTAATACGGGAAACGGGGGCGGGGAGAATTAAGGAGAGAG | |||||||||
gi|58659214|gb|CK047894.1|CK047894 49608rsiceh_20361.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CGGCACGAGGGCGGAGGACGTCGTCGAGGCGGCGAGGCTGGCGAGCGGCGGGCAGCCGTTCGAGGTCGTGTACTACCCGCGCGCCAGCACGCCGGAGTTCTGCGTGCGCGCGGCGGCGGTCCGCGCGGCGATGCGGGTGCAGTGGTGCCCCGGGATGCGGTTCAAGATGGCGTTCGAGACCGAGGACTCCTCCCGGATCAGCTGGTTCATGGGCACCGTCGCCAGCGTCCAGGTCGCCGACCCCATCCGTTGGCCGCAGTCGCCGTGGCGGCTTCTCCAGGTGACCTGGGACGAACCGGACCTCCTCCAGAACGTGAAGCGGGTGAGCCCATGGCTGGTCGAGCTGGTGTCGAGCATGCCGGCCATCCACCTCTCGTCCTTCTCGCCGCCGCGCAAGAAGCCCCGGATTCCGGCGTACCCGGAGTTCCCCTTCGAGGGGCAGCTCCTCAACCCGGCGTTCCCGCCAAACCCGCTGGCACACGGGCACCACCATTACCATCACAANCACCCGTCCTTCTTCCCGTTCCCCGACGTTAGTGCTCCTGCAGGCATACAGGGAGCCAGGCATGCGCAATTTGGTCCATCTTTATCAGATCTC | |||||||||
gi|88540377|gb|CI469267.1|CI469267 CI469267 Oryza sativa (japonica cultivar-group) 2nd week immature panicle Oryza sativa Japoni TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGTAGGCACGCGCCAAAAATTATTGTAACTTAGAAGCATTTCAAGACAAAACAAGATGAAACGCATGTGACATGGAGTCCGGGCCTCCTCGGCCAAGCTTGTTACTTACCAACCTACCCGATGTAGTACAGGGGGTCAGGCAACTTGAAGGTGCGGGCGCCCTCCGGCGCACCGAGGATGTCGCTCCACTGGTCACCGATGTTACCGANAATGGTGAAACCGGCATCCTCCACCTTCTGCCGCTCGCCGGANTTGAATGCAACGACAGACCCCAGGAGTTCGCCGGCGGTGTGCACTGCTGGCTTGACCAAAAGCTTCATCCACC | |||||||||
gi|117246194|gb|CT848502.1|CT848502 CT848502 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): ATCCTCTCCCCTCACTCACTCACTCTCTCTCTTTCTTTCCTTAACTCTCTCTCTCCTCTCCACTCCTCCTCAGGCGGCGGTGGCGGGAGCTGGCGGCGCTCGGCAGCCTCGGGCTCTGGCCTGGAGCTGGCGGTGCCGGGGACGGCTCGGCCTGGAGCTAGCGGCGGCGGGGGCGACGCCACGGGCGGCCGTGCTTCCAGGCCAGTCGAGAAAGCCGTCACTACCTCACCCACACCCACTGTTCTTGGCCATAGCTGCCTACTCCCATGGTCTCCTCGTCCTTGCCCTTGTGCTCGATCGATCACCAGCCGAGCTGATTTTTCTCTTCTGCTTGATCTCTACCTCTGACATGCATCTGAAGACCGGAGAGCATCTGCATCTGCCTATATCATCCGGTCATGGATATGGATAGATGACCGGCCTGTTCATGTCTGAAGAAAAATCAAAGGTTTGGTTTTGATCGGCTTGAGAGCGTGCCTGGCTCCCTGCATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCATGATCTCTCTTTCTGCCTTAATTCAGTTTCAGACATGTGTAGTTGGATTTGTTTCCTCTAGGTGTTCATGTTAATTACATATTTCATGTTGATTTTGCCCGTTTGGATATGTGTTTGTCTGCTTGGTTTCGAATTGTTTTAGCAGGGGGGCAGAACTAATCAAGGATACTGCAAATCGTTGGAATTAATTTCTTGTTCAATCTTGATCCAGATAACTATGAGAGCTTTTAATCACAACGAGAAAAGCTAAAACCAAAATGCGGGACTGATGATCAGCATGGAGAGCAGCCTCAATTTATTTGTAGACGCTCAAGATCTGTCAGAAGTAATACTGCCACAATGAGGATGTTTTATGGTTATATAGGCTAAAATATATATGAGTAATATTCCATGCATGTCTATCAGCATTGTAACTAGCTATACAGGATAAAAATTCACAAAAATTCATACAGAATCTCTCTTCGATATATCCCCTACTAGCAGATAGCTGAACCCTGAATAGAGCTTTGCAAGGTTGCAGTTAGCAGGTACAAGGCTCTGAAAGGAAAAAAACGAATCCTTTCCAAAAATGCATTTGCCTGATAAATATGACACAAGGACACAGTTTTGGGAGGCGCCGGTAAAAAGTGGTCACTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|66926772|gb|CX113620.1|CX113620 EI083A10 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CACAGCTGCTCTGTGTGCCACTGATTGGCTGGCCAGCGTGGTGCTGGCCACTGATTGTGCTTGCCAGCAGCTTGTGCGTGCCAGCGGTTGGCTCTATCCATCCGTCGTCCGTCGCGCTCACTCACACGCGTCCATCATACTCAACACAGCAAGCCAGCAACTCAGCAGCACACACACACATCACGCACTGCATTCGTCTATCGTCCGACACCCAACTGCCCTGGTGTTCAATCCTGGCATGGTGCTCCAACCTGCATCTGGCACAGGTGTGCTGTGGTGCATCTGTGCTGTGTGATGTGCGTGCACGTGGCAGGCAGGGAGCCATGCGATCGCAATTGCCCGTCTGACCTCCCCACCGCCCTGCCCCCAATGTTATGGCTGCGCAGCTGTGATGCGTCAACTGGACTCGCCCCGAGAGATCGTCCTCGTGCTGAACAGACTCTGCCGGAAACATCCTGGGTATACCAGTACAAAGCAAGACCAGGGAGTGCCAGTGGATACATATGTTTGGCATGGGTACTCGTTCAAACCACAAATACAACCATGATCAACAAAAGCAGAACACCATGGGTGGACGAGGTTAAGTACGGTATTAAATGCTATCGACGGAACAGTACAACACAGGCTATCACAGATAAACAAATCATTAGAAGACATGATGAGACAGTATGTGAAACTTATACAGATCAGAGCGCAAGCTGCGCAAGGTCAGGAGACAGCCACAGAAGGCAGAGGGAAGCAGAAATGGTGATGTGTGCTATGCAAGGGAATGGAATTAGTAATAGAGTAAGAATAACTGTACGGTTATG | |||||||||