| mature miRNA: TGGACGGATCTCGGATGTCCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86437005|gb|CI118727.1|CI118727 CI118727 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TGGACGGATCTCGGATGTCCA EST sequence (targeted fragment marked with yellow): TCTTTTTTGCAGTGCAAAATCCATAGATATTGTGGAAAACATGGATCGAAAAATGTACATCTGAGATTCGTCCACATCATCATAAGTAAAAGTTTTACTTAGCTTTCACTGTATATTTTCCACCTTAAATGTGGAAAAAAATTAAAAGTTGAGGTGATAAAATATGTAGTACTCCCTCCTCCATCCTAAAATATAACTTTAGAATTTTTCTTAACAATTCAGACCGCATGCAACAAACAAAAGAATGCTCTCGAGTCCTAATAGTTTGTTACCCTGGTATCGTACGTATAGTATAGAATGCTCGTGGGCATCTTGCTGCCAGATCACACCACGAGAGAAATAACAAATTTTCAGCTGTACAGATAAAACAATCTTCAAATAGCAGAAAATCTCATGTTTTGCGATAGGTAGGACTTCATGATATTTGGCTTGCACTCGAGTCTATTGAACCATTCATTGTCGCAGAAAACCCTAATATTTTTCTGGTCATGACCGGGTGGGTAGTGGAACGATATGTTCATCAGCTTGTCGCAGTTCTCAACAAGAAGCGCCAGCGACGACTTAAATTCACAAGGCAGCACACATATATCAGACAATTCTGGCAGATCACTGAGATCGAGATATGTAAGCCGAGGGAAGATCACATGATC | |||||||||
gi|117219092|gb|CT861695.1|CT861695 CT861695 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGGACGGATCTCGGATGTCCA EST sequence (targeted fragment marked with yellow): GACCCGTGCTCCCTCACCTAGCCCTAATCCCTCCTCCTCCCCCAATCCCGGCGGCTCCTCCATCGCGCAGCCACCGCCGGCTTCCACTGCGCCCCTGGCCATCCCTCCCCCTCCCCAATCCCGATAGCTCCTCCCGTCGCGCGAGCCACCGATCGCCCACTGCGGTTTCGTCGTCGCGCAGCCGCCGGCTTCCACAGCGCCCCCGGCCATCTCTCCCCCTCCCCATTCCCGGCGGTCTCCGTCACGCTGCCATCAAGTCGTCATCGATTACTCGCCCTCCGATCCCCATCGCCCCTCCTCGCCCCCACTCCGCCACCAGAAATGGCGGAAGAAATTGCAACATCTAAAAAGCTTTTTCTTAATGCCAAGAAGAACGGGTGTCATAATGTGATTGATTTTAAGGAAAAATTGCAAGACTTTGATTGTACTCTGACAGGCCTGCATAGAGGTAAATATAGAATGGATACGATGGAGTCTGATTGTGCCATCAAAAAGTTTGATGTTGACCGAACAAAGGCAAGCACTTTTTCCTTGATAAAGAATGTTCGTCACACAAACATAGTTACCGTCAGAAATTTTTATGACGAAGTGGGACAACCGAGATTCGTCCTATCTTGGGTGGATGGTAGCCTTACGGCATGGGTAAAAAGTGAAGGAGCTAAGATGCTATTCAAGAAGTCATGGACTGGTAGATCGCCGACTCCCACGTTTCGCCAAAATGTCATTGACTTATGTGCTGGGTTGGAACACCTATTTGAAGAAGGCATCTATCCCATACGCATAGGTGTTCAAGATATGTTTTGTGAGGAAAGCCCGGAGGAAACCCATCGGTGCAACTACTGGATCACCAAAGCTAAATCCATTTGTAAAAAAGGGAATAAAGTTGGGAAAGTAAATAAAATTCCAAAAAGGGTCCTTTGGGAAAAAAAAAGAAGGGGAAGGAAAAAAAAGGAAAAATCTTTAAGGGAACCTTTCGGGAACTTTCTAAAAATTCCAAAGGAACCCCTGGCCCTTTTCCGAGAAATTTTTTTTTAGACCAAATTTGGGGGAAAAGGGGGGGG | |||||||||
gi|218480811|gb|FG969336.1|FG969336 MA_LYP9_08120 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq TGGACGGATCTCGGATGTCCA EST sequence (targeted fragment marked with yellow): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCATCGAGAGCAGCAGCAGCGATGCCGTCGCCGCGCCGGGCCGTGAATCTCCGGTGGTCTTCGTTGGAGACGGAGGTGGAGGCGGCGATCGCGGTGGAGGGCGGGTGCGGGGTGGACCTCGCGATGGTCGGCCGGGCGCTGGGGCTGGACCCGGCCACCGTCCGCCTCAACGGCTACTTCGTCAGCCGCGGGCGCGGCCACGTCTCCTCCGCCGTCACGTGGCGCGCGCTCCTCGACTTCTTCGCCGCGCGCGGGCTGCCCACGGGCGACGCCCCCGCCGAGCCCGTCGCCGTCCACGGCAAGCCCGCGCCTCCTCCTCCTCCTCCCCCGGTGTCAGATTGTACAATCAATGTTTGCCCAAAGCGGAAATTTGGGTTGGTTTCAGATTGTACAACCGAGATCTGTCCAACGCGAAAATTTGAGTTGGTTTCAGATTTTACAACCGAGGTCTGCCCAAAGCGAAAATACGGGTTGGCTTCAGATTGTACAACAGAGGTC | |||||||||