| mature miRNA: TGGGTTCGCGGCTTACCCACT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87004767|gb|CI306851.1|CI306851 CI306851 Oryza sativa (japonica cultivar-group) UVC irradiated shoot Oryza sativa Japonica Gr TGGGTTCGCGGCTTACCCACT EST sequence (targeted fragment marked with yellow): ACACAGCGCCGCCACCAACAAGGCGACACCGCCGCTGCCGCCGCCGGCACCGGCCGCGTTGACACCGCCACCGACGCCATCAATCACCATGGCGTGCCATAGACGGTGTAAGTGGGTAGACTATGGGTGTTGGTCGGTGAGCCGCGAACCCACTTATTTTAATTTATAAGTGGATTTGCGGTTTATTTTAGCCTACAAGTGGATTTCACGCCACTTACACTCGTACCATAAACCACCGTAACATCTTTTCGGTTTTCACTGTGTGAGCTGCTGCCTC | |||||||||
gi|89169679|gb|CI110038.1|CI110038 CI110038 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap TGGGTTCGCGGCTTACCCACT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTACACACAAAGTCAAATCAATACATGAGTAAAAATACAACCCACAAACTTGCATAGTTTCACACACCCAACAACAAGCTTTTGGGCTTTACTAGCTTAGCTAGCTAGCTAGCACTGGTTGGTGACAAACCCTACACTGTACATCATGTAGTGATGACAACTGTACATTTTGGCAATCAATCATCCAAAAGGAAAGAGGATCTAGCAGATTATCCAATTGATTGGAGCTGCATATGCATAGATAATAAGCATGTTGTCTCTATTTGAGCTATAGTAGAATTAAAAGTTGCATCCATGGCCCCACATATGCCCTANCCTCCTTNACCTTATCTAGCTACCATGCTGGGCCCAGTCCCCTTGTTGCACGGATCATGGCTGGATCGAATCGATGGACGATCAATCATCGATTGGTGTTAGGTTGATCAGTAGCTTAATTCGTCGTCATTCTCAATGCAGTGTCGATCTGTGTAAGCGAGGAGCCTAGCTCAGCTTTAGGGTGTAAGTGGGTAAGCCGCAAACCCACTAATAGGTTAAAGTAAGTGGGTTCGAAACTTACTTTTATCTATAAGTGAGTTT | |||||||||
gi|117247439|gb|CT856750.1|CT856750 CT856750 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGGGTTCGCGGCTTACCCACT EST sequence (targeted fragment marked with yellow): CCGTACTCATCGTTGTCAGTACGTACGTTGTCCACAGTCCACACTATGCCAGCAACAAATGCCGTGCCCGGGACAGCAGGCCCCATCCCGTTCAAGGACGTCGTCGTAGTCATCGACAACGACGACCACGACGACGGCGCGGAGGCGATCCCGAGGCAGCCTGCCGCCGCGGCCGCGGCGGCGGAGGAGTACCGCGGGATCGTCGCGGCGCTCCCGAGCAAGCTGCCCGGGACGCCGCAGAGGATGCGCCTCTACCAGGGCTCCTGGTTCCGGGAGGACTGGGTGCTCGGCTTCGTCGCCATCCAGCGCCGCTTCGCCCCGCGCGACGGCGACGTGGTCCTCGCCAGCCTGCCCAAGTGCGGCACCACGTGGCTCAAGGCCCTGGCCTTCGCCACGGCGGCGCGCGCCGCGTACCCGCCGGGGCCGGCGCTCGCCGCCACCGGCGGCGGCGGCGAGCCGCACCCGCTGCTCAGGCTCAACCCGCACGACTGCGTCCCGTTCATGGAGGCCGTGTACTTCGCCGGGGACGAGGCCAGGCTCGCCGCGGCGCCGTCGCCGCGGCTGATGAGCACGCACGCTTCGTTCTCGGTCCTGCCAGCCTCCATTACCGACAACCCTGGCTGCAAAATCGTTTACATATGCAGGTAAGTGAAGTGATGTGAGATGGCTCGATACATCTCCACTTCTAAACATACATGCGATTATGGACGTTGCATGGCCCACAACACACGCACAGCCCACTCGGCCACTCCACCGCACGCGTACGTCGCACTTTTGAGCTTTTACACCCCAGTATGGAAAGTTCTGCTAGAATTTGAAGATATCATACCAAAATCGATTTTATTCTATACACATGAAAGAAAAGGCTTGAATATGGGGAGAGTATGAAAAACACAAATTAAATTTTTCAAAAAAAAAGTGGACATTGACTGTATAAACCTATAACTCCCCCCAGGATTCTTTAAAAATATAAATTTCACCCCCAAAAAAAAAAAAAAAAAAAAAAGGCCCCCTTTGGCCCCGGAGGGGGGGGGCCGCGGACCCAATTTCCCCCCTAATAAGAAGGTAAATATACGCGGCCCTCCCCGGCCCCCCGCGTTTTTAAAACTCCCTGGGCCGGGGGAAAAAACCCCGGGGGGTTCCCCCCCCCTATAATCCCCCTTTTGACCACAACCCCCCCCCTCTCTCTCCCCCCCGGTGGGGTGTAAAAAAAAAAAAAAAAGAAGACAACCCCAACACCGCACACCACACCCCCCCCTCTCTCTCCCCCCCCCCTCTTTCTTCCTTCTCTCCTCCACCCTC | |||||||||
gi|88985325|gb|CI002842.1|CI002842 CI002842 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TGGGTTCGCGGCTTACCCACT EST sequence (targeted fragment marked with yellow): GGCAATACGTTCCTTTCTTAGAATTATAGAGATAACGCTTGTTTTACATGCATGACCATTTACTGTGCAGATATAGAACCAATTATTTACTGGGAGATAAATGGAACCATGGAATATTTGGGTGTCACAATTTCTGATTCTGACTGGGTGTAAGTGGGTAAGCCGCGAACCCACTTATAGGTCAAAATAAACGAGTTTGTGGCTTATTTTGGCCTATAAGTGGGTTTCGCGGGTTAGCCGCTTACAACCTTTCTGAGTGACTTATTGAGTTTCCACTGTATGTTACCTTAATTTAATTTTCTGTCTAACAGCCTGCAGGAAAGAAAAATTCCTTTTCCTTATTTTTTCCATGTAGCCAAAAACAGTTGATTACTGTGTAGACAGTCTCATGTTTCGATTGCCTGTCGCAGTAACTGCATCTTCTCATTTCGATATCTGTGCAAGGTCCT | |||||||||
gi|58656803|gb|CK045483.1|CK045483 46993rsiceh_8057.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TGGGTTCGCGGCTTACCCACT EST sequence (targeted fragment marked with yellow): TCCCCGGGCTGCAGGAATTCGGCACGAGGGCATCTGAAATCGTCAGAGCTATACAGTGCAACTGATATCCATGGGTGCTTTCTTTGTCTTTTACATTGTGATTTTTTTAAGGAACACAGTAGAGGAGGCTCCGCTGTTAAATTTTACATTTTGGATTTTGGTTTGTTTCTCTATTTTTTAGCTCCCTTTTTTTTACATATTTTGATTTTCAGTTGTGTTATCTTTTTTTGTGGAGCTTCAATTTTAGAGATCTGTTTTTTTTTTTTTACATTTTAATTTTCCATTGTTTTCTCTATTTATTTTTTGAGCTCCAGTTTCAAAGACCCGCTCAAAATTGGGGTGCAAGCGGGTCACCCGCGAACCCACTTATAGGTCAAAATAAGCGAGTTCGCAGGTTAGTTTAGCCTATAAGTGGGTTTTTGTGGGTAGCCGCTTGTACCCTTAGCTCAAAAGCATCTAGACTCTAGACTTGAGTTGTTGATTTTTCTCAAAAGAAAGTCTTGGCCTTATTATTTCTTTTGACAACTATTTTTTCACTAGTACATGTCATTATTCATTTTCCAATTTATGGTATTTCTCCTAGTTTTTCCTAAATTTTGTGCTGTATTGTTTTTCGCTGTGTAATGTTTATTCTAG | |||||||||
gi|86865646|gb|CI335394.1|CI335394 CI335394 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TGGGTTCGCGGCTTACCCACT EST sequence (targeted fragment marked with yellow): GGCAATAGTGTTCCTTTCTTAGAATTATAGAGATAACGCTTGTTTTACATGCATGACCATTTAGTGTGCAGATATAGAACCAATTATTTAGTGGGAGATAAATGGAACATGGAATATTTGGGTGTAACAATTTCTGATTCTGAGTGGGTGTAAGTGGGTAAGCCGCGAACCCAGTTATAGGTCAAAATAAACGAGTTTGTGGCTTATCTTGGCCTATAAGTGGGTTTCGTTTTTTTTTTGTTTTTTTTTTTTGTGTGTGATTTATTGAGTTTTCAGTGTTTGTTACCTTACGTTTAATTTGCTGTTTAACAGCGTGCCAGACAGAAAAATTCCTTTTCCTTATTTTCTCCATGTAGCAACAAACGCGGATTACTGTGTACAGAGTCTCATGTCTGGATTGTGTGTCGCAGTAACTGCATCTTCTCATTTGATATCCGTGAAGGTGCTCGTGTC | |||||||||