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mature miRNA: TGGTGAGCCTTCATGGCTAAG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|66947292|gb|AU312136.1|AU312136 AU312136 Oryza sativa anther cDNA Oryza sativa Japonica Group cDNA clone JRA1307, mRNA sequen 

TGGTGAGCCTTCATGGCTAAG
||.|.|||||| ||||||||.
ACTATTCGGAA-TACCGATTT

EST sequence (targeted fragment marked with yellow):
TGTCGTCACCGTCTTCCTACCGCACCGCAGCCGCTGACGTTGGAGCGGAAGAGCAGTTTGCTTCAGAAAGACGTTGTGCAAGGACAGTACTGGGATCAAGAAGAAAGGTTCCCGCTGTTTCCTGAGGAGTTTGCTGCTGAAGACGAGGAATAGGTCGTGAATCCCAGTTGACTGCCTGTGGCAAGTTGAATGGAGCTACTACGCATTTATCATATTTCCGCTGCTACTTTAATATTTTCCTTAGGCCCTTCGTGGCAGAATAAATGTAAACTTTAGCCATAAGGCTTATCATAGTCATTATTAATATTAAATATTAGGTTTCCTTCGTGAAAAAAAAAAAAAAAAAAAAAGCGGCCGCCGAATTC


gi|33821343|gb|CF336482.1|CF336482 JMT--06-I22.g1 AtJMT-overexpressing transgenic rice plasmid cDNA library (JMT) Oryza sativa J 

TGGTGAGCCTTCATGGCTAAG
|||||||||||||||||||||
ACCACTCGGAAGTACCGATTC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTACAAAGATATAAAAGGTCTTTAGCTTGGAATGAGAGAGCTAAGGCAAGCCCGGCCCAAGGCAGCTCATTTTCAACAAGTACGCGGTCAGAAATCACTTTCCCCTCCCATTTGCCTGGGAGCTCATTCTCCACATAAAGCACTAAAATGATATTCTCAACCATATGCATTGTTACTACTAAGTTATGCAATGAAATGATATGAGAGTGAATAATTATCAGAACCAAATTATTTGGCTTAAAATGGCGTGCCATCGGAAATGGTTTGATGCAATGACAACACATATTCCACAGCTTAGGAGAAGGAGAAACAAATGAGGAGTTGAGCAGTTCCATCTTTTCAAGAACATATCACTGTTCCTTTTCAGCTTGCATTTCAAGCCTTTCTGTACTTCCCTTATCACCTTAATTCTTCACACCATACCTCTGAATTTGTGATGGATGATCTGAAGAATGGAATCTTACCTAGAATTAGATCAAAGAACTGAAAGAATCACCTACCGAAGATCGCGAGATGTTGAGAGCTAGAAAGAGGGATACAGCCTAGCATGGGGGGATGAGAATCACTCTCTTAGCCATGAAGGCTCACCATCTTCCATATTTCATCCACCATCGGAGAACCCCAAGTGGGTTCCAGTGATGAACCAAATAGTGGAGATAGGCAAGCCATTCTTGGCTAACAGAGGCAATCTCCTCATCTCCATGT


gi|58654951|gb|CK043631.1|CK043631 43589rsiceh_11676.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G 

TGGTGAGCCTTCATGGCTAAG
 |||||.||||||.|||.||.
CCCACTTGGAAGTGCCGGTTT

EST sequence (targeted fragment marked with yellow):
GCACGAGGGGACAAGCGATTGCCTGTTTCATGAAGTACATGAACACCTGGGTTACCCGGATTTATTGCCACAAGATTATCAGATTGTCAGGTGCCACCCAAGATCTTCCCAGATCTGTTGTGTGCAATGTCCATGGCGTGAATCCAAAATTTCTTGAGGTAGGTAAACTAAAGTTGAAGCAGCTGCGGAATGGGGAAATAGCCTTCACAAAAGGGGCATACTATATTGGGAAGATGGTGTGGAGTAAAGGATACAGGGAACTTCTTGACCTGCTGTCCAAATATCAGAGCAAGTTGGTGGGTTTGGAAGTAGATTTATATGGTAGCGGAGAAGATTCCGACGAAGTTCGAAAATCTGCAGAACTTCTGAGTTTGGCCGTGAAGGTTCACCCAGGACGTGATCATGCAGATCCCCTGTTCCATGACTATAAAGTATTCATCAAACCTAGCACAACAGATGTGGTCT