miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGTCGAACCGCGGTTGTTCGA
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|29674528|gb|CB670803.1|CB670803 OSJNEe04B06.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe04B06 3', mRNA sequence 

TGTCGAACCGCGGTTGTTCGA
.||||| ||||||. |.||||
GCAGCTCGGCGCCGTCGAGCT

EST sequence (targeted fragment marked with yellow):
AGGCCGCCGCCGCCCGCGCCGCCGCCATGGAGCCCCCCCAGCCGCCGCCGTCGTCGCTCACCGTGCAGGCCGACTCCGCCGCCGCCGCATTCCTGACGCCCAAGAACGGCGGTGTCAGCGGCGCCGGCGCGGCGGACGACGAGCTCGAGGCGATCGTCGAGCTGCCGCGGCTCGACGAGCTGGACGCCGCCGAGCTCGTGTTCGGCGCCGCGTTCCAGGACACGGCGGCGGAACACCCGTGGTGCGACCCCGTCTGGATCGACGGCGGCTACGCGGCGGCCGCCGCGGCGGCGGCGGCGGCCGCGGCGCACGACGACCTGTTCGGCCTCGACGCCGACCACCATGGATGGGCCCAGTCGGTTGGTGCCCTCTTATGGAACCTGTGATTCGATCATAATAATAATTAATCTCTAATTAATTACCAAGTAATTAACAGCTCTAGCTTCTTTAATTTTAATCTCTCCTTTTTTTTCCAGCTTCCTAAATCTGTACATAGGTTTCCAGTTTTTTTTCTTCTTTTTTTAATCTTTTTTCAGGCAGGCTTAATATATATTTCTGCTTGATTTTTTCCCCTTTCGTTTCAAGTGTCCTGTAGCTTTGCCTTTTTGTTCAGTTTGGGGCTCTTGTCTTCTGAATTTGTCTTCCCTCTTGCCTAGTGGCTCTACCTGCAGAGTGTCAACTAAGCTAAGTCATTAATGGGTTAATTATGTATAATAAAAATCTTTACATGCAAAAAAAAG


gi|86865136|gb|CI344620.1|CI344620 CI344620 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone 

TGTCGAACCGCGGTTGTTCGA
.||||| |||||||| .||||
GCAGCTAGGCGCCAAAGAGCT

EST sequence (targeted fragment marked with yellow):
AGAGTACAAATAAATAACTATTTAATACTCGCAAATAATAAAAGATTACAGAGGTAGATAGTTCCTCTCAAAAAAAAATAACATTCTAGGCAGCGGAAAAATAAAACGATAACAATCTACGGAACAGCTATGGCGACTCCACTCCACAGGCATCTTAACCAAGAACAAGCCTAATCCTCCAGATCATCACATTCACGTGAGACACTCCTCTTCTTGCTCTCGCACTGATGAGACCTCAGCAAGGTCTTCGAGAAACCGCGGATCGACGAAACGGCCGAAATCTTGCAATAATCGGTCTTCAATTAATCTTCTTGATCACTTCCGACGCACTCACGAACCTTCGCAACGACGGAAACGACAAGCACGACGAAAAACGACGAACGACGACGGCCGGCGAAGAGAAGGGCGACGGCGGCGGCTCGGTTGAACGGCGACGGCG


gi|86433578|gb|CI093921.1|CI093921 CI093921 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap 

TGTCGAACCGCGGTTGTTCGA
|||||||| ||||| ||||||
ACAGCTTGACGCCATCAAGCT

EST sequence (targeted fragment marked with yellow):
TTTTAATCACCTGTCGAACTACCGCAGTTCGACAGGTACCCTATCGAACTGTGGTTGTTCGATAGGTACCTTGTCGAACCACGGTTGTTCGATAGGGTGCTAAACTTGCGATTTCGCCTAACTGACCTATAGTTTTGCCTCAGTAAACAAACGGAATCCATTTTTACAGTCAAATATTGTCCATGGAGAAGGTGCAATAACATCAGATGCCATAGGATCGTTATGGACAGAAGAAAATACAGTCCAACCTATTGAGTGCATGCGGTTACTGCAGCGGCTTAGCCTAAAAGCTTGCCATCTTGTATGTGAACAGCTAACAAGTTCATCCTTTCTTGGGGGCTTTAAGGCAGATTCCATTGTCCTGATCCACCTAGCAGCTTTTTCTGAACTTCGAGCACCCAACTCCCTGGAAGTATCAGCACCAAAATTCATCTGTGGATCAGGCCATCGTCGATGACGGAGCAGCTGATCTTCTACTCGAACTCCAATACCGTAAAGTCAGTGACTTGCACAGCTGGGGGATGGCCTTGGGGTTTGACATG


gi|88410843|gb|CI578649.1|CI578649 CI578649 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

TGTCGAACCGCGGTTGTTCGA
|||||||| ||| . ||||||
ACAGCTTGACGCAGTCAAGCT

EST sequence (targeted fragment marked with yellow):
GTCTGTTCGATATGTCCCTGCCTAGCATTGTAGTGATACTGTTCATGTAATTTTTTATTTGTTTTTGGACCACCTACCCTGTCGAACTGACGCAGTTCGACATGTACCTGTCGAACTGTGGTTGTTCGATAGGTATCCCTGTCGAACCGCGGTTGTTCGACAGGGTGCTAAACTTGCGATTTCGCCTAACTGATCTATAGTTTTGCGATTTTCCATTAAAATCATATTGTTTTTAAAAAAAATTCCTGATGAACTTCCTGACCCCACTCTCCGTGGACGACCACCGTGCCTCCTTGCGGTCTTCTCATCGCTCTCTGGTGGAGGTGATCCAGCACGCTTGAACGGGAGTGATGTCAACAATGACGTGTGTGGACATCTGATCCCCCTCCCTAT


gi|88965310|gb|CI009346.1|CI009346 CI009346 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c 

TGTCGAACCGCGGTTGTTCGA
.||||| ||||||.||..|.|
GCAGCTCGGCGCCGACGGGTT

EST sequence (targeted fragment marked with yellow):
TTTTTGACACCGAAACATAAAGCTGCTCAAATCACCTTTTTTTTTCGTAACATCTCATTCATCATTTCGCTGTCTTTTTTTTTTTTGCAACATCGCTTTTAGCATTTTCATCTGTAGACTGCAACGTCCCAAACTCTAATCCCGTCAATGGGACGTGAATGCCGAGAAGACGTTGCAGTGGCCGGGGTCGGCGAGGTGATGCAGGAGGTTATCAATGGGGCCCTCGCCGGTGTAGACGGCCTGGAACCAGAACCCCACGAAGGCGAGCATGGCGAGCCTCCCGTTCTTGATCTCCTTGGTGCGCAGCACCATGACGGGCTCCGGCGATCCCCGGCCCCAGTTGCCCCAGTCGAACCACAGCCCGCCGGGGTAGCCGACGTCCGGCACGGGGTTCCTCCGGCTTGGGCAGCCGCGGCTCGACGGCGACGCACCCGG


gi|86889386|gb|CI317186.1|CI317186 CI317186 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

TGTCGAACCGCGGTTGTTCGA
|||||||| ||  .|||||||
ACAGCTTGACGGGGACAAGCT

EST sequence (targeted fragment marked with yellow):
GTCCTTCAAATGAATCATGACAAATTATCATTCAAATATACAAAAAATAATGAAACTAAATAATTCAAATATTTTAACCAACAAAAAAATACTACAATTTCTTACCAAACATTATCAAAACCCTAAATCATATACATATAACATTACAAAAATATTTTCCTTTCTTACACACTAAAATAAATTACATATTATTAAAAAAATAACTTATTACAAATAAATGGAGAACGCGACCCTGTCGAACTACGCCAGTTCGACGGATATCCTGTCGAACAGGGGCAGTTTGACAGCCCTCCTGTCGAACAGGGGCAGTTCGACAGCCCTGCCTGTCGAACGGGGGCTGTTCGACAGGTCCTGTCGAACGGTAGCCTTCCGATCTCCTCGCCAGTCGCG


gi|88717151|gb|CI740661.1|CI740661 CI740661 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro 

TGTCGAACCGCGGTTGTTCGA
|||||||| ||||||||||||
ACAGCTTGACGCCAACAAGCT

EST sequence (targeted fragment marked with yellow):
ATACTTTGAATATTGCATCTTACGATTTTTTTTAACAAAAATAATATTATTTTAATGGAAAATTGCAAAAGTAGAAGCTAATTGGCTAAAATTGCAAGTTTAATACCCTGTCGAACAACCACAGTTCGACAGGTGATTGTTCGACAGGGTTGTGGTTCACTTAAAAGAAATAGAAAAGGACAAGAAAGAATATGGCAGGGGGCCTATCAAACATCCAAAGTACGATAGGTCTGCATGCACAATGGTGCATAGTAGTGTACAGTTCGCATAGCGATTGATCTCTTTTTTTTCTATTATTTTTTATCCCTTGTCGAATAGGGGCAGTTTGATAGGGTATTTTTTATACCCTGTCGAACAACCGCAGTTCGACAGGTAC