| mature miRNA: TTACTCCCTTCGTCCCACAAA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117234887|gb|CT847940.1|CT847940 CT847940 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): CTCTCGTTTTCCTCTCCTCTCTCGGTCCTCCCTCTCGTTTTGCTCTTCTGTTTCGCTCGCTCTCCTCTCCCTCGGAGCGGCGGAGCTAAGGCGGCAGGCAACGGCGCAAGAGGGGAGGTGGCTGGCGATAGGTGGCGGCGGCGGGTGGAGACGGTGCAGTCCAGCGGTGGCAGCGGTGGGAGGCGGCATCGACGGCGATGGCCGCGCTCTCCCCTCCATGGCAGCGTCGTGCGGCGGCTTCTGCAGCGTGCGGCGGCCGCCCGGAGGTGCCGTCCCTCCGCCAGATCCAGCGGGAAGAAGGGCTCCGGAGCCGCGCCACCACCAAATGCGCCGGTCGCCTTGGTGCTGTCCCTGCCGCCGTCCCACGTCGAGCTCGTCCACAAGCCCGACGACCGCGCCAAGCACTTCCGCCGCCGCACGTTGCCTGCAACCCGACGTGCCTCCTACTACCTTTTGTTTGCCAGCAAATTCATACTCCCTCCTTCCTACCGTTAACTTTTTTAAACATATTTGACCTTTCGTCTTATTAAAAAACTTTTATGAAATGTGTAAACTTACATATATATATATGAAAGAATATTTAACAATAAATCAAATGATAAAAAAGAATTAATAATTACTTAAATTTTTTAAATAAGACAAACGGTTAAATATTTTAAAAAAGTCAACGGCGTTAAACATTTTGGGATGAAGGGAGTACAAGATTGCCTTTGTTTGACTTTCTGTATTGCCGGATCGGATTGGGAGGGAGGAAATACTCCTTCCGTTTTAAAATATTTGACACTGTTAACTTTCTAGTACATGTTTAACCGTTCGTCTTATTAAAAAAATTTCTGAAATATGTAAAACTATATGTGTAAATGAAAGTATATTTAACAATAAATCAAATGATATGAAAAGAATAAATAATTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|86538028|gb|CI178234.1|CI178234 CI178234 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GGACACGGAGACCAGTGTTTGTCTTTTTTGGGACGAAGGGAGTATATAGTAGTTACATCACACTATAGAGGCTATTTAACTACTGCCTCCGTCCCAAAATATAACAACCGTCTCAAAATATAACAACTTTTGTCTATGTATCTGGACACGCAGTTGTCCAGATTAATAACTGAAAATACTTATATTTTGGGTTGGAGGGAGAATCAATTTTACTCGAGTCGCTCAGATTGATTTGCTGTTCGATCAAGCAAGCTGAAATCTACCAGCAGCAGCAACTTTAGTTCCCATGAAACAGCTGAAGCGCCGTCGCCTTCGTCATCCCGGCCGGCACCTTCTCGACGAACAGCAGGATCCCCACCGCCTTGGCCGCCTCCACGGCCAACTTCTCCGCCGCCTCCCACGCCTTCTTCTCCTGCTCCATCTTCTTTGTATCCACCTTGTTGTGCTTGGACGCCGAGTTGGAGTCCTCTAGCTGCAGCGCGTCCATGGTGAGCAGCGCCCTGGACAAGACCTTCCACCCGTTCACCTGCTCCTTCATGTCGGCGGTGAT | |||||||||
gi|89171043|gb|CI040320.1|CI040320 CI040320 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTTTTTTATTTTTTTTTCGAGATGAAGGGAGTAATTTATTAATTTATTATTAGAGTATATATATTTCAAGACAAATTAACACAGTACGGTTTTTTTACCCAAGTTGGTATATATGTGTAATGCCAGGAAGATGGAGTAATCGGTGTAGAACATGTATTTGTATACGAAAAAGAGCTATATATCTATGTATAATCCACAACGTACACGCACGTAGTACAAGTAGTACTCCATGTACATGCAGAAGTACATATGCATATGGTACAAAAACTGATCTCTAGCTCTCAGGTACGTATAGTCGATCGACGAATAAATTAAGGAAACAGATAGCGTAGTGACCGGCCGGGCGATCAACC | |||||||||
gi|88222405|gb|CI222361.1|CI222361 CI222361 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTGAAAGATAGTACATCGATCCGCACCACAAAATACAATTGGAAGAAAAACAAGATAAGTACAGTGATGAATTTTCAAACATATAGACGGCGTACTACCCTATACACCACGCATCTTTACACATGACCAAAGATTTTTACAGCTATTAGTTTGACTGTCTGCCATGCACTACTCCCTCCATCTCATAAAAAACTAATTTAGTATTAAATCTGATACTTCCTAATTATATCCGGCACTAGATTATTTTTTATGTGACGAAGGGAGTAGGCCATGCTACATTTGAATTGGCTCGTCATTTTCCGGCGACAAGTGGCGGGATGCTCTGCTCGTTCCTGAAGTAGTCGTCGGCGTCGATCTGCGCCTTGGCCATGGCGAGCCGCTGGTAGTTCCCCCTGAA | |||||||||
gi|86854027|gb|CI252018.1|CI252018 CI252018 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTTTTTTCGAGATGAAGGGAGTAATTTATTAATTTATTATTAGAGTATATATATTTCAAGAGAAATTAACACAGTACTGTTTTTTTACCCAAGTTTGTATATATGTGTAATGCCAGGAAGATGGAGTAATCGGTGTAGAACATGTATTTGTATACGAAAAAGAGCTATATATCTATGTATAATCCACAACGTACACGCACGTAGTACAAGTAGTACTCCATGTACATGCAGAAGTACATATGCATATGGTACAAAAACTGATCTCTAGCTCTCAGGTACGTATAGTCGATCGACGAATAAATTAAGGAAACAGATAGCGTAGTGACCGGCCGGGCGATCAACCATGTATGCATGGCGATGGATCGACCTAGCTAGCTAGCTCTCATTTTATTCAGCATAAACACAGATAACACAAGATACAAAGCGTGAGACGACAGCTGCATCTCGGCCGGCGCTGCATGTCATCCTCCGGTAGCGATCGATCGGATTAGTTCACGCTGGAGCAGTCGATGGAGGGGCTGATGGTGTAAGGGAATGCTGACGCCGCACT | |||||||||
gi|66925436|gb|CX112284.1|CX112284 EI075B03 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GCACGCGTCAGGNACGGNTCGGAATCCGGGTCGACCACGCGTCGCCCACGCGTCGATCGCGAGCGNGCGCCTTTTTTTTTTTTTTGCACTGTGAAAAAATACTAAAGCAGATGGAAAAAGTATACTAATAAATACTTCCTTCGTTTCATAATATAAATCATTCTAACATTTTTTATATTCATATTGATATTAATAAATTTAGATATAAATATGAATGTGAGAAATAATAGAATGACTTATATTGTGAAACGAAGGGAGTAAAGAAAAAGGGGGAAAAAATGCTATTGCCACGCACGCATCACAATTCACAAGCCAAGTACTAGTTCTTCAAGCAACCAGCTTGAGGTGGTACGCTGCTA | |||||||||
gi|86419249|gb|CI054050.1|CI054050 CI054050 Oryza sativa (japonica cultivar-group) heat treated callus Oryza sativa Japonica Gro TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GACTTTAAAGAACTGCATAATAGAAACATGAGGATGANTAAGGTTGGTCTTACAAACTCTTAAGATAATGACATAGCTATTTAATAAATTTTAAGTAAAATCATAATAAAAAATATATAATTTTGTTTGGGTGCTAGCCGCGCAATTGCGCGGGCCACCCAACTAGTTTTTTTTAAATAAGACGGATGGTCAAACATTGGGCACGGAAATCAGGTTTGGTCTTTTTTTTAGGACGAAGGGAGTAACGATGAAGTAATAGTACTAGTAAGGAGGCGAACAATGGAACCTGAAAACCCAAAATGTCAAGAGGCGCAGTGCTCCCGTCCCGTCACACTTTGCGTAGCATCGTTCTGTACATGGGAGCTCCACGAGCCAGCACATGGCGCTCCCAGTCAGACGCAGCGCCGAACGGGTTGTCCATCTGGTGGTCGCCGCCGCCATCGTCGTCCACCACCAGCTGGCCCTTGCCGTGCGTCATGAACTGCTCTTTCATTCTGAGCAGGACGGACTCCA | |||||||||
gi|86498469|gb|CI141102.1|CI141102 CI141102 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): ATGACTTATCTTTTGTTATATTTGCAGCTAAATTTTTCAAATAAAACGAATGGTCAAACGTTGCAAATAAAAAGTCAAAAACGTCATCTATTATGGGACGAAGGGAGTACAATTGTATGCTTAAGATTGGTCTTTTTTCTTCGGATAAGTTCACTCTGGGTCCCTCTATTTGTCACGCTGTCTGATTTTCATCCCTCCGACACAAAACCGGGTACGACGGGTCCCCGAACTTACAGACCCAGTTCAAAGTAGGTCCTAAGGCAGTATTGTGAGCAGTATTGCTGACGTGGCGTCCGACGTGGAGCGTTGACTCGGTTCACATGCCGACTCGGACGGCCACCACGCCACCATGAGCAAGGAAGAGGAGCAAGAGGAGATGGGACTCACGACGGCGGCGAGGGAGATGGAGAGCGTCTGAGCGTGCAGGAGATGCACGGGGAGGCAGAGGCGGAGACGGTGGAGGAGGAGAGGACGCCGCGGACGAGGGCAGAGTAGGTGCCATGGAGCTCCACGGGAGCCGGGAGGGGTGCGCCGACACCAAGGCCCTGGAAGAAGCGCTGCGTCCAAT | |||||||||
gi|86506595|gb|CI149228.1|CI149228 CI149228 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GTCTTTTTTGGGACGAAGGGAGTATATAGTAGTTACATCACACTATAGAGGCTATTTAACTACTGCCTCCGTCCCAAAATATAACAACCGTCTCAAAATATAACAACTTTTGTCTATGTATCTGGACACGCAGTTGTCCAGAATTAATAACNTGAAAATACTTATATTTTGGGTTGGAGGGAGAATCAATTTTACTCGAGTCGCTCAGATTGATTTGCTGTTCGATCAAGCAAGCTGAAATCTACCAGCAGCAGCAACTTTAGTTCCCATGAAACAGCTGAAGCGCCGTCGCCTTCGTCATCCCGGCCGGCACCTTCTCGACGAACAGCAGGATCCCCACCGCCTTGGCCGCCTCCACGGCCAACTTCTCCGCCGCCTCCCACGCCTTCTTCTCCTGCTCCATCTTCTTTGTATCCACCTTGTTGTGCTTGGACGCCGAGTTGGAGTCCTCTAGCTGCAGCGCGTCCATGGTGAGCAGCGCCCTGGA | |||||||||
gi|58653922|gb|CK042602.1|CK042602 51200rsiceh_23248.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GATCCCCGGGCTGCAGGAATTCGGCACGAGGCACAATTATTGTTACCCGCAAACTCAAGTACCACACACTCGTTCAAACATAAGAATATATAGTTGATGCAATTTTTTTTTAATTTTTACCATAGTGCTATGACCTCGCAGTTGTAAAAATGTGCAATTAGTTCTAAACTCTTGCATCCCACCCCAATGCCATCGTACAATGGAACACACTCCTTTCATCCCATAAAAAAATCAACCTAGTACTGAATATAATATATCCTATTACAACAAATCTAGACTAGTGGGACGAAGGAAGTAGATAGGAATTACTACATGAGAGCGCATAAAGTGTCCCACAGAGCCATGATACCAGTACAGATAATCCTCAGACACAGTGCCGGTATCTACGGTA | |||||||||
gi|88996891|gb|CI389557.1|CI389557 CI389557 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GGCAGTCAAACGTTGGACACGGAGACCAGTGTTTGTCTTTTTTGGGACGAAGGGAGTATATAGTAGTTACATCACACTATAGAGGCTATTTAACTACTGCCTCCGTCCCACAATATAACAACCGTCTCAAAATATAACAACTTTTGTCTATGTATCTGGACACGCAGTTGTCCAGATTAATAACTGAAAATACTTATATTTTGGGTTGGAGGGAGAATCAATTTTACTCGAGTCGCTCAGATTGATTTGCTGTTCGATCAAGCAAGCTGAAATCTACCAGCAGCAGCAACTTTATTTCCCAT | |||||||||
gi|117246957|gb|CT843761.1|CT843761 CT843761 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): ATCAAATGTCGAGATAATTGTGGCAGACATCAGCAAGTTTGAGATGGAGCGATCTTTTGACAGGATCATTTCCATAGAAATGTTTGAGCACATGAAAAACTATAAGGCACTTCTTAAGAAGTTATCCAGATGGATGAAAGAGGACAGCTTATTGTTTGTTCACTACTTCTGCCACAAAACATTTGCATACCACTTTGAGGTCACTAATATTCCAGAACTTTTTTCACCGGTCATCTTGACTTGGCTTCATCATAAATATCTTTCCTGTGTACATGTATCTGTATTTGTGTTGTCTGAAGTATGACATATTTAAATTCAAAACAGCTTATAGGCTTCAACTGAAATGAAGCTCCTGGTTCCTGTTTCTTAGTGATTGTAATATGAGTTCCTTGGGAAACATTATTCATTAATTATAATCATCACCAACATTATAGGAAGTAAATCTTATGCATATCTGCAGAAAAAATAGTATGATTGCATATTATCATGCTTTAAATTTATCTGTAGTTTTCATACGAATTATTACCTCATACATTCAACAGGACAACAATGAAGATGATTGGATAACAAGGTATTTCTTCACTGGAGGAACAATGCCATCAGCAAACCTCCTCCTTTACTTTCAGGACGATGTATCTATTGCCAATCATTGGCTTGTCAGTGGCACGCATTATGCCAGAACTAGCGAGGAGTGGCTGAAACGTATGGACAAAAACATCACGTCCATAAGGCCAATATTTGAGAAAACTTACGGAAAGGAATCAGCTACCAAATGGATAGCTTACTGGCGCACGTTCTTCATCTCAGTCGCCGAGCTTTTTGGATACAACAATGGCGATGAGTGGATGGTTGCGCATTTCTTGTTCCGGAAGAAGTAGAAGTCACCCCTGGAGCCAAGTACTCCCTCCATCCCATAAAAAACCAATCTGGTATTAGAGGTGACATTCCCTAGTATAACGAATCTAGGCAACCTTCTGTTCAGATTCGTTGTATTAGGAAATATCACCTCCAATAGTAGGTTGATTTTTTGTGGGACGAAGGGAGTAATTCAGAAGCATTCAATCCCTTTTCAGACCTCACTTGATGATTCAGGAATCGTGCTTTGCATGACCTCTATGAACATTTTCATTTTTATTGCGTTAAATTGCAAGTAGTGAGATGCTTTGCTGTGTTGTTTCGTTTCCAATAAACTGTAGTTCTTTTCCTTCAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTA | |||||||||
gi|86428326|gb|CI075007.1|CI075007 CI075007 Oryza sativa (japonica cultivar-group) NAA treated callus Oryza sativa Japonica Grou TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTACCAGCAAAATATCAAAATTTCTTAGATTAAGGGACGAAGGGAGTAGTAGCGATTAAGGTACAATACGATATGAATTCTTATTCAATTAACTAGAGAATTAACCGATACAACTGGAAAATTAATATTAGGATGAAGAGGACGCAACTAACGTAGCCAAGAGCCTAAGACCGCGAGTATGAGCTACACACATTTGCAATCAGATGCAATAATGCATGCTCGTAAGCATGGCATGGCCGCGTACGTAGCTAGCGCTTATTATCCGAGATGAAGACGAGCAAGCTAAGCTAGCTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGCGGCGACGCTGGCGAAGATCTTGTCGATGGCCTGCAGCGCCTGGATGGCCGACCTGAC | |||||||||
gi|58610444|gb|CK038156.1|CK038156 35133rsiceg_3028.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cD TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): CACGAGGGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTTCCTTGGAGGTAATCCTGAATTCTACGAAGATATTTCTTGTCTGTTTTTTCTTAAGCATGTCAATTTACTGCTAATTTTTTTTTGTTGGCTATTTGGTTATAGCTAGCTACATTCTGTTGTATCTGTTGTATGCAATCGTTTGTTCTTCCATACTCCCTCCATCCCATAGAAAATCAACTTCTATGTCCAGATTCGAGCCCAGAAGTTGTTTTTTTATGAGACGAAGGGAGTGTATGTGATGTGATTTGATGCTGGTATCCGTTCTTATAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTT | |||||||||
gi|66919238|gb|CX106086.1|CX106086 BI124M21 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GGGATAACGGAGCTGTACGTATACTAAACCACAAAGGTTTGTCTAAGCAGAGGTGGTCATGGAAGTCAAAATCCCTTATATTATGGGACGAATGGAGTAAAATGGTTCTTTTAGAGTACCTCCTGGATTGTGCACAACCATGTGGAGTCGTAGGTGATGGTTGCAGCTCAGTCAATACCCGACAGCATAGTGCAGATGAAAATTCTTCTTAAATATACAGTTGCAGAGGACCTCAAACTTGTTTTAATGATGTTCAATGGTGTCTAGGCAAAATTGCTACCAGGTAAAGCTTCTTTATGTATTGTTGCTCTGACCATCATTTTTCTGCCAACATGATCAGTTATGTATGATATACAGTAAATCTGATTAGCTTTGTAGACTTGTGCAGATCTTTCCTAATTCATATAATTGATTTTTCCTGATTGCGTATCACCCTTAATGCTATATTTCGTTACTTATGATTTCATTTA | |||||||||
gi|89163875|gb|CI100963.1|CI100963 CI100963 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTGGACACGGAGACCAGTGTTTGTCTTTTTTGGGACGAAGGGAGTATATAGTAGTTACATCACACTATAGAGGCTATTTAACTACTGCCTCCGTCCCAAAATATAACAACCGTCTCAAGATATAACAACTTTTGTCTATGTATCTGGACACGCAGTTGTCCAGATTAATAACTGAAAATACTTATATTTTGGGTTGGAGGGAGAATCAATTTTACTCGAGTCGCTCAGATTGATTTGCTGTTCGATCAAGCAAGCTGAAATCTACCAGCAGCAGCAACTTTAGTTCCCATGAAACAGCTGAAGCGCCGTCGCCTTCGTCATCCCGGCCGGCACCTTCTCGACGAACAGCAGGATCCCCACCGCCTTGGCCGCCTCCACGGCCAACTTCTCCGCCGCCTCCCACGCCTTCTTCTCCTGCTCCATCTTCTTTGTATCCACCTTGTTGTGCTTGGACGCCGAGTTGGAGTCCTCTAG | |||||||||
gi|86505573|gb|CI148206.1|CI148206 CI148206 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTAGGCTCATCTTAAAACACTGTATTTTTTTTTCTTTGAGATGTTGGAAAGGCACAGACCACTTATTTCACAAGCGCATATATAGTTTGGTCCTCGTGACATCTACCCCCTCTATCCCATAAAAACCATCCTAAACCATCCTAGTACTGAATGTGACATATCTTAGTATTACAAATCTGGATATACACCTGTCCAGATTCGTTGTACTAGAATATGTCACATCCAGTCTTAGTTTCGTTTTTTTGGACGAAAGGATATGTCACATCCAGTCTTAGTTTCGTTTTTTTGACGAAGGGAGTAGGTTGAAAGTAGAGCAGCATGAGCTGTTCGTTCAATGTGGTAGAATTCCCAGGGCCCTGGCTTACTCCACAAGGTCATCAAGTATGTCGCCCAAATTCGTGTACTTGAACTCGAACGGTCGAACCCTTCCCTGATCAGCTTCTCCGACGAACAGCAGACTCTCGGTTTCTCAGGCATCCCGTCGAAGCGGTCGGTTTTGACGTTGTACTGCGGGTACCTTCCGGCCATGAAACGGGCAAGCGCCAAGACGGTGGTGTTGAAGCTGCAGCAGATGTACCTCGCCGACGACTCTGCCGACGACAATGACGATGACTCCTTCTCGGNGAGGAATATCTCGGNGCGGCAGAGGTCGTCGACGTGAACGATCG | |||||||||
gi|29686881|gb|CB683156.1|CB683156 OSJNEf11C23.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf11C23 3', mRNA sequence TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GACGCCAGGCAAATCGGTGGACACGTACCTCTTCGCGCTCTACGACGAGGACCTCAAGGGTGGGCCGGAGTCCGAGCGGTCGTTCGGCCTCTACCGGACTGACCTCACGGCGAACTACGACATCGGGCTCGCCGCCGCTCCCGGCACGGCGGCTCCGGCCACCGTTACTCCAAACACGCCGCAGCCGAGCAGAGGGATGACGCCGACGGGGTACTGTGTGACGGCGGCCGGCGTGCCGGGGACGACGCAGGGGCAGCAGGTGCCGCAGACCAGCTCGTGCTACATCCCCGCAGGCGCGGTTTCGCGGCGAGCTGACGCCGCCGTGCGTCGGCTTGTTTGGCTTGGAGTGTTGCTTTGCCTGGTGACTTTAGTCCGCAAGTAGATGGCTGCGTAGGTACACTCCCTCCGTCCAAAAAAAAAGACAAACCCGCGTTGCCGTGTCTAACGTTTGACCGTCCGTCTTATTTGAAAAAATTATGAAAAAAATTAAAAAGACAAGTCACGCATAAAATATTAATCATGTTTTATCATCTAACAACAATGAAAATACGAATTATAAAAAAATTTCATATGAGACGGACAGTCAAAGTTGGACACGAAAATTCAGGGTTTGCCTTTTTTTCTGAGACGAAGGGAGTATACGTACTAGGTACCCGTCACCTGCTAAGAGGAAAAGACACGTACTCCACATACTTTTGTGACCAACTTGGTATCATTGTGCATATGAATAGTGACATGTCACTAGATAATATTTCTACGAAGTTGCACATAATCGAATGATTAAGCTTTCAGGTACCTAAAAAAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTTGTC | |||||||||
gi|89195597|gb|CI393626.1|CI393626 CI393626 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): AACAACAATGAAAATATTAATTATAAAAAAATTTCATATAAGACGGACAGTCAAAGGTTGGACACGGAGACCAGTGTTTGTCTTTTTTGGGAGGAAGGGAGTATATACTAGTTACATCAAACTATAGAGGGTATTTAACTACTGCCTCCGTCCCAAA | |||||||||
gi|117220346|gb|CT858788.1|CT858788 CT858788 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TAAGGATAGCATGCAAATACTAGAATACCTCTATTAAATGATGTTTGCTTATGGTGAGTGGGTAGTGGGGGGTTAAAGTAGGTAGAAATTTGAATTGGAGTTGATAGACATGACAAGTAGTATACCAAAATCCCTTATATTGTGGGATAACTAGAAGGGGCAAATCCCTTATATTATGGGACGAAGGGAGTATGTACTGATGAACCCATGATAGTCTTATTGAACTCAACATGATAATAGGTGGCAAATCTCAAACTGATGCCCATCGGAGTATTTGAACATGACATACTAGTTTAATTTTACAAGCTGTGTTAATTTTCAAGTGTTTCTACTTTCTAATTGACTCCAGTAACATGAGAGAAATCCTACCTTCCATCGCTTCTCAAACCTTGTAGGAGGTTAAAATTTTCCCTTAGTAAATTGGATTTGTTAAATAGAAGAGAGTTAGCATCCAGCCATCCGTAGACATGACGGGTGGAATTGTTCATTATATTTTATCTTTTATCCTTAGCTGACACTTATCTGCCATCTTGTTTGCTATTGTGGAGCGTGTACATACCATTTTTGTAAACCATGGATAGTTTTAGTCTTTGCCGACTATCTAGATGGCCTCAACTTCTCAAGGCTTGTGTGATATGAAATACCACAGTGTAACTAGTCCGGTCTGTTATGGATTAGTTTGGTTCCTGTTGGTTAATCTATAAGAAAAAGAAAAGGTGGGGTCTCAGTTTCTATGGCTCATGATCCGAGGGGTTAGCCTCCAAAGCTTGTATTATTCTCTGGGAATCATTGACCTTTTGGCTTATGCTTGCTTGGGAAATGAAAAGCCAAGATGAAAAACACTATAATGGGAATGGAATTCCTTTTTTATCCTATTTCTTTGGGTGGGTTTATGGGAAGATGGGATCATGGGAGTTGGGTTGCCTTTTTCACATTGAATTGGGGAAACACCTAATTCCCTAACCTGTGTGGAATTGGTAAAAACACTTAACTTTAAAACTGGAGCATTTTTTTCCATTTTTTCCTTTTTTCATTTATTGCATTTTGTTTATAAACCCCGTTTTAAGATGGTTTGGGGGGGGCTAAAAGAATTTTAATGTTGCTTTTGGGGGGGGTGCATTTCTTAGAGGGGGGTGGGAAAATTAAAAATTGTGCCCTCCCCCACCTTTTTTCGGGCCCCCCCGGGGGTTTTTTTTTTTTCTTTTTAAAAAAAGTTTTTCTTGGGGCCCAACAACACTTTCCACAAGAGGAAAAAAAAAATTTCTCTTTGTTTTTCAAAAAACAAACCCCTCCTCTTTTCTCCGTTGGCGTTAAAACAAAAATAAAATCAATAATCTCTACAAACCAACAACAATATTTAATAAAA | |||||||||
gi|88289251|gb|CI553227.1|CI553227 CI553227 Oryza sativa (japonica cultivar-group) root of seedling in anaerobic condition for 3 TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): CGCTCAATGTAGGATGAAGGGAGTAACAATTACCGAATGGCTCATGCGCATACACAAAACAGACAACCTTCATAGGACTCTAAATAGAATAACAAATGTGTTACTAACATGCGAGTAATTAAGGGCCCCGTCTGGAAACGAGCATGTTGAATTCCAGTACAAATCCATGTCAAGCCCCAATAGTTTTGATTTGCATTGCACCTGACTCAATAGGTTCATTACTCGTCCACACAAGAGCCGCACAGCACAAGAACTATAAATGAACGAGTCATTGCACAGAAGAATCTGATATACAACACAAATGGTCATCAACCGATGCAAAGTCTCTTTAAGCTCCTCTCGACTAGCGAATGGAGGTGTACATCCACTGTCAGTAGCTGGTACCAAAAAACCACCATGCCAGCATGTTGCCTCAAGAGCAACACAGGGATCTGC | |||||||||
gi|29683816|gb|CB680091.1|CB680091 OSJNEf04G10.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf04G10 3', mRNA sequence TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): AAGTTCATAATCTCTTCGACTCATATAGGGAAAGTATTACTTTCCCTGTACAGTTCACTGATGTTTTTAAGCAGGTAAACTAGAGTTGAAGAGGTGCTGCAAGGGATTGAAGTTCCCTAGAGTAATATGACTGCCCAAGGGGGGGGATGTCTACTTGTGCCTTTTGGATAATCTGGCACCCTCATTGTGCTTTTGGGACAATTTGGCACGTTTTCCCAGGGAGGCACCCTCATTCCTTTAAATGGTTGTGCTGATATAGTTTTGGATGAGATTTTGTAAAGATAGTGTTACTGCGCCTTTTACGTTTTTAACAGAAAACCATGCCCCTCCGTATATATAGCAAGTCGGGTGGGCCCACGAATGTGCCCTCAACGACGTGCTGCTACTATATCATCAGTATTCAGTACTTCCTCCGTTTCCCAATGTAAGTCATTTTAGTATTCCCCATATTTATATTGATATTGAGGAATTTAAATAGATATATGTTTAGATTCATTAATATAAATATGAATGTGAAAAATGCTAGAATGACTTATATTGTGAAACGAAGGGAGTAGATGTTTGGAGGCCCCCATGTCAGCTGACTATGAATGTGTCAGCTTATTAGCTGCTTCAATAATCCAAAGTTTTTGTAGCATGAATCCAAAGTGCTTGTGATTGGTTTCTTTTAATCCTGGGAGAGATTACCCCAAGGGTTGCTCCTTTGC | |||||||||
gi|58688738|gb|CK077425.1|CK077425 78316rsicen_20611.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indi TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GATCCCCGGGCTGAGGAATCGGCACGAGGTGGGTCATATCCCATCTTAAGTTAAATTATTTNGGGACGAAGGGAGTAGTGTTAAAAAATGTTGTATGAAGTATAAATGATTGATACAGTATGGAGCATCACAGGTCTTAAGTTTGGTGGTGGATTGAAGTGATATTTTTCTTTTCTAGACAAAGCATCTTGTCAAATAATTTTGTGTAACGTGTGACTGCATTTCTAACACATAAATAAGTAGTACCTGAATTCCACCTAGTGGCCGCACGAAATTCAATCTGTAAGTGTTGAAAAGAAGTGTTCTTTTTAATAGACCCTGTTGAATAACAGCGACTATAAAAGACTTCAAGGGATGGAGAGGAAGCTTCTTAACAGGCCCTGTTCACAAGACATGGTGTTGTGTAGCATGTCTTGTTGAAGATGACAGCAAAAAATTTCTTGGTCGGTTCTAACGATTTGATCTCATTCCTGACATGGACTTGAAGCACATGTCAAACCTCCCTGATTTTTGGCATCTGTGTACTCTGGCCAATTTGTGGCATGCAACTATGTGC | |||||||||
gi|86545366|gb|CI185572.1|CI185572 CI185572 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GGACACGGAGACCAGTGTTTGTCTTTTTTGGGACGAAGGGAGTATATAGTAGTTACATCACACTATAGAGGCTATTTAACTACTGCCTCCGTCCCAAAATATAACAACCGTCTCAAAATATAACAACTTTTGTCTATGTATCTGGACACGCAGTTGTCCAGATTAATAACTGAAAATACTTATATTTTGGGTTGGAGGGAGAATCAATTTTACTCGAGTCGCTCAGATTGATTTGCTGTCCGATCAAGCAAGCTGAAATCTACCAGCAGCAGCAACTTTAGTTCCCATGAAACAGCTGAAGCGCCGTCGCCTTCGTCATCCCGGCCGGCACCTTCTCGACGAACAGCAGGATCCCCACCGCCTTGGCCGCCTCCACGGCCAACTTCTCCGCCGCCTCCCACGCCTTCTTCTCCTGCTCCATCTTCTTTGTATCCACCTTGTTGTGCTTGGACGCCGAGTTGGAGTCCTCTAGCTGCAGCGCGTCCATGGTGAGCAGCGCC | |||||||||
gi|88250481|gb|CI348711.1|CI348711 CI348711 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GACTTTTAAAGAACTGCATAATTAGAAACATGAGGATGATAAGGTTTGGTCTTACAAACTCTTAAGATAATGACATAGCTATTTAATAAATTTTAAGTAAAATCATAATAAAAAATATATAATTTTGTTTGGGTGCTAGCCGCGCAATTGGGCGGGCCCCCCAACTAGTTTTTTTTAAATAAGACGGATGGTCAAACATTGGGCACGGAAATCAGGGTTGGTCTTTTTTTTTAGGACGAAGGGAGTACCGATGAAGTAATAGTACTAGTAAGGAGGCGAACAATGGAACCTGAAAACCCAAATGTCAAGAGGCGCAGTGCTCCCGTCCCGTCACACTTTGCGTAGCATCGTTCTGTACCATGGGAGCTCCATGAGCCAGCATATGGGGCTCCCAGTCAGACGCAGGCGCCGAAGGGGTTGTCTATCTGGTGGTCGCCGCCGTCATCGTCGCCCACCACCAGCTGGCCC | |||||||||
gi|117229402|gb|CT859799.1|CT859799 CT859799 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): ATCGTTATTATAGGATCTACAACGAAGCCAGCTAAAACGATGCCAATTTGTGCGTCGACCCAATAAATCGGTGCGGGACCCAGTTCACGCGAGCACGCCAGCGTTGCGGGCTTGCGTCTCGCGCTCCCGCGCCCCAGCTGGACCCTGCGAGCGGCTAAGGAAAATGTTCACTCGGGGTCCCTCGTCTTATGGAAAAGTGTTGAGTTTTAGAATCATCGCTAAACCGAAATTCTTCCAACGTTTCACTCATTTTAGTATTTTCCACATTCATATTAATACTAATGAATCTATATATATATATATGTCTAGATTTATTAGCATCAATATGAATCTGGGAAATGCTAGAATAACTTACATTGTGAAACGAAGGGAGTAAATCTAGATTCATTAGCATCAATATGAATGTGGGAAATGCTAAAATGACTTACATTGTGAAACGAAGGGAGTAACATATATAACACATTACTAATCTTGCAAAACCAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|88842105|gb|CI081361.1|CI081361 CI081361 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): AAGAACTGCATAATTAGAAACATGAGGATGATAAGGTTTGGTCTTACAAACTCTTAAGATAATGACATAGCTATTTAATAAATTTTAAGTAAAATCATAATAAAAATATATAATTTTGTTTGGGTGCTAGCCGCGCAATTGCGCGGGCCACCCAACTAGTTTTTTTTAAATAAGACGGATGGTCAAACATTGGGCACGGAAATCAGGGTTGGTCTTTTTTTTTAGGACGAAGGGAGTAACGATGAAGTAATAGTACTAGTAAGGAGGCGAACAATGGAACCTGAAAACCCAAAATGTCAAGAGGCGCAGTGCTCCCGTCCCGTCACACTTTGCGTAGCATCGTTCTGTACATGGGAGCTCCACGTCAGACTGCAGATAAACCTTTCCATTGGGCTGAAGAAGATCAGCAATAGCTTCAACAAGCATTCTTCGTACCATTCTCCACCTGTTCTGCTCTCTGTTGAAATCAGGATTTGGGCACTGTATAGTGACAAGAGCCAACTGTCCA | |||||||||
gi|29682824|gb|CB679099.1|CB679099 OSJNEf02C20.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf02C20 3', mRNA sequence TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): AAGCAGGTAAACTAGAGTTGAAGAGGTGCTCCAAGGGATTGAAGTTCCCTAGAGTAATATGACTGCCCAAGGGGAGGGATGTTTACTTGTGCCTTTTGGATAATCTGGCACCCTCATTGTGCTTTTGGGACAATTTGGCACGTCTTCCCAGGGATGCACCCTCATTCCTTTAAATGGTTGTGCTGATATAGTTTTGGATGAGATTTTGTAAAGATAGTGTTATTGCCCCTCTTACGCTTTTACCAGAAAACCATGCCCCTCCGTATATATAGCAAGTCGGGTGGGCCCAGGAATGTGCCCTCAACGACGTGCTGTTATTATATCATCAGTATTCAGTACTTCCTCCGTTTCCCAATGTAAGTCATTCTAGTATTCCCCATATTTATATTGATATTGAGGAATTTAAATAGATATATGTTTGGATTCATTAATATAAATATGAATGGGAAAAATGCTAGAATGACTTATATTGTGAAACGAAGGGAGTAGATGTTTGGAGGCCCCCATGTCAGCTGATTATGAATGTGTCAGCTTATTAGCTGTTTCAATAATCCAAAGTTTTTGTAGCATGAATCCAAAGTGCTTGTGATTGGTTTCTTTTAATCCTGGGAGAGATTAACGCATGGTTTGCTCCTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|88473415|gb|CI410686.1|CI410686 CI410686 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GGAGCAAACTGACCATTGCTGCTATCTTTATTTTTGAGTTACAGTGTACTAGTCTATCCAAAAAAACCCAAACTCTGGCTATGAACCTGGACACGCGTGTGTCTAGGTTCGTAGCTAGGATTGGATTTTTTTTTGGGACGGAGAGGTAGGAATCTAGGATCGATANACACATCATATACATACTCCCTCCATTAAAAAAAAAGACAAACCCTGAGTTTCCGTGTCAACGTTTGACCGTCCGTCTATTTAAAAAAATTATGAAAAAATTAAAAAGACAAGTCANACATAAATTATTAATCATGTTTCATCATCTAACAACAATGAAAATATTAATTATAAAAAAATTTCATATAAGACGGACAGTCAAACGTTGGACAGGGAGACCAGGGTTCGTCTTTTTGGGGACGAAGGGAGTATATAGTA | |||||||||
gi|88460781|gb|CI520059.1|CI520059 CI520059 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): GTGAGAAATGCTAGAATGACTTACATTGTGAAACGAAGGGAGTAGTAAAAGACTCGCCATTGAACAATAGGAGGAACGGTACCTTGCATAACCGTTCACTTTTTGGATTAGCGTCAAGCAATCAGACCGGAAAATCACTTTGTAAAAACCTTCATCGAGTGCAAAGATCACAGCACATCGAAGTTATGGCAAATGTCCATTTTACATCAACTGAACATGTCTTATAATTCGATCTTACGAATTCTGTAGTTTGCTATATTTTACAACTCCACGAGATGGGCTTCGATTTTGTCATTGTTAGCGTGTCGTGTGCTCTACCAGAATCCTCTTCAGTCATTCTGCACAGGTGTAGTTCTGTGAACGAGGATTAACAAACAAGTTCACGAGAGCTACAACGATCGATCAAATCTCTT | |||||||||
gi|88480816|gb|CI418087.1|CI418087 CI418087 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): ATCATCTAACAACCATGAAAATATTAATTATAAAAAAATTTCATATAAGACGGACAGTCAAACGTTGGACACGGAGACCAGTGTCTGTCTTTTTTGGGACGAAGGGAGTATATAGTAGTTACATCACACTATAGAGGCTATTTAACTACTGCCTCCGTCCCAAAATATACCAACCGTCTCAAAATATAACACNTTTCGTCTATGTATCTGGACCCGCAGTTGTCCAGATTAATAACTGAAAATACTTATATTTTGGGTTGGAGGGAGAATCCATTTTACCCCACTCGCTCACATTGATTCGCTGTTCGATCACCCCAAGCTGAAATCTACCACCAGCAGCAACTTTAGTTCCCATGAAACAGCTGAAGCGCCGCCGCCTTCGTCATCCCCGCGCCGGGCCCCTTCTCGACCGAAACAGCAGGAAATCCCCACCGG | |||||||||
gi|86479476|gb|CI122109.1|CI122109 CI122109 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): AATCATGCAATGCGTGGAGATATATCTATGATCATGCAATGCATATGTATATACAGAGTACTTAGTACTTACATGAACCATGGTAAAATTCTTCTATATAACACTGTTCAGCTTGTGTGTGTGGATTGGACCTGGATGCATCACTGCTGTTACTGTCGGACGGGATAGCCGGATGGTTCTCAAATGAGCGAAAGATAAGTACTACTTCCTCCGTTCCACGATGTGAGAATGATTTACATTGTGGAACGAAGGGAGTAGCAGTGATGCATCTGAACATATCCAGAAATTAAAGGTGGCCAGGATAGTGTTGAACATTTCTTCATTTGATCTTTCACACATGTATGGGCCATAGTGTAACTTTCAGTTAAACGTCTGATGATACCGCCTGCTGAGAAGAGGATTAACACGGTTGTCCAACTTTCACCAGGAGAGGATTAAAAGTTTAAAACGCCTACATGCTTTCCCTGCCTTGTCCTAGACCTACGGGTACGAATTGACTATATATACGGTACGAAGAGATACTAACAGAATTGTTATGGACAGTTATTGACGTGGATCTGGTTTGACTTAATGATCAAGCACTAGGTTTGGTACCTGACAATTTCGTCTGTAAACGTATAAATCTATCTGGCTACGAGTGTTCCATATAA | |||||||||
gi|87011442|gb|CI279351.1|CI279351 CI279351 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): TTTTATCAAAATTTCTTAGATTAAGGGACGAAGGGAGTAGTAGCGATTAAGGTACAATACGATATGAATTCTTATTCAATTAACTAGAGAATTAACCGATACAACTGGAAAATTAATATTAGGATGAAGAGGACGCAACTAACGTAGCCAAGAGCCTAAGACCGCGAGTATGAGCTACACACATTTGCAATCAGATGCAATAATGCATGCTCGTAAGCATGGCATGGCCGCGTACGTAGCTAGCGCTTATTATCCGAGATGAAGACGAGCAAGCTAAGCTAGCTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGCGGCGACGCTGGCGAAGATCTTGTCGATGGCCTGCAGCGCCTGGATGGCCGACCTGACGTAGAACGCGATCTGCCCGGCGACGGGCGCCAGCGGGTTGGCGGCGACCTCCTGCCTCACGTCCTCCTCCGCCGA | |||||||||
gi|88223109|gb|CI222958.1|CI222958 CI222958 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s TTACTCCCTTCGTCCCACAAA EST sequence (targeted fragment marked with yellow): AACAAAATTTCTTAGATTAAGGGACGAAGGGAGTAGTAGCGATTAAGGTACAATACGATATGAATTCTTATTCAATTAACTAGAGAATTAACCGATACAACTGGAAAATTAATATTAGGATGAAGAGGACGCAACTAACGTAGCCAAGAGCCTAAGACCGCGAGTATGAGCTACACACATTTGCAATCAGATGCAATAATGCATGCTCGTAAGCATGGCATGGCCGCGTACGTAGCTAGCGCTTATTATCCGAGATGAAGACGAGCAAGCTAAGCTAGCTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGCGGCGACGCTGGCGAAGATCTTGTCGATGGCCTGCAGCGCCTGGATGGCCGACCTGACGTAGAACGCGATCTGCCCGGCGACGGGCGCCAGCGGGTTGGCGGCGACCTCCTGCCTCACGTCCTCCTCCGACGACGGCAGAGCCGCGCCGCCGGGGTCCTCGTCGAACCGCCACGCCTGCTCCAGGTA | |||||||||