| mature miRNA: TTAGTCCCGGATTGGTAGTCC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29670922|gb|CB667197.1|CB667197 OSJNEd14G19.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd14G19 3', mRNA sequence TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): CATGAGTCAGGGCCAAAGCCAAGTGGTGTCCATCTGGCTCCATCACGCTGTCCATGGGCCATTTCTTACAGAAAAATATGCAATGACACACATTTGGCCAACTCCACTCAACATAGTTTTGTTGCGACTACACTAAGGAAGTTGACAAAGTGAATCAAAGATATAGCTTGACGTTACACCGAGATGACCTGGTGAAGTAGGTTGCAAGCTGCACGGTATCATGCATCTAGGGCTCGCAGATCTCGATCATGGGTGAAGATAAGACATGGACATCGAGACAGTTTCGCCTCTGTACGAGAACATCACCGAAACATAGAAGAAGTTTGATACAAACCACTGAATGAAAGAAGATGCAGTTATTTCAGCAATTCAGCTGCCGCGCCTCCAATCTCTGCTCATCCAAAATGTTAGTAGCAGAGAGTTTGCGAGAAAGCTGGTTATGCACGGTCTTCTCCATTACACGAAATGCAGTCCTCGGTAACGTGCGAATCGCACGCATTGAGAGGCAGAAGAACCATCCGGTCGTCGTGATGGGGATATCTCCGTGCTACTGCATTGCTTTTTTCTCTGCAAGCCCCGAAGCAAAGTTAAAATCTCGAGCTACATATGTCGGACAATCCTGTTGCCTCCCAATCCAAATTTTACTTTGGTTTTCGCTCTTGTTTGGATGGATCTTAATGTCGACTCATCACTCATGCATCGCTCATCCTCCTGGCCTTTGATATATATCCATGGGAACTACTAGAGAAAGGCTTTGTAGTCTCGCTTGGGAACCTCCTGACTACGAATCCGGGACTAAAGATGAACATTTATTCTCAAATCCCAAAAAAAAG | |||||||||
gi|29623964|gb|CB628975.1|CB628975 OSIIEb04N19.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb04N19 5', mRNA sequence TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): AGGACGTTCGGACCCTACGGCAATCTTCTAGAAGACCAGGCTGGATGGACGCGGTTCGAGGTCTCCATGGAGCACTCGGGGTCCATCGTCGGCTTCTGCGGCCGGAGTGACGACTTCGTGGACGCCATCGGCGTCTACGTCGCCGTCTGGAATCCCGAGAGGTTCTATGATAGCATGCGCAGGCAGGGCGTCCGCGTTTACCGGGCTTCGCCTCTGCGCATGGACCTGCGTCAAATAGAAGAAGAGAAAAAGAAGGAAGAAGTGGAACGTGGGCGCCTACAGAAGGAGATCGAGGAGGGGCGAGAAAGTCTTCGGAACTTACGATTGAAGCTTCGAGTGGATATGCCGCCGGATCGGAGAAAACGCCTGATAGGACGCGACCTGCGAGTGGAGCATCAAGAAATCGAACGTCAGTTACAAGAGTTGCAGCAACTGGAACGCGGGCGTCAGGCAAAGCGCCAGACACTTGAGGAGCTGCAAGTGGAGCAACAAGAAATCGAACGTCAGTTACAAGAGATGCAGCAACTGGTACACGGGCGTCATTTACAGCAGATGCAGCAAATGGTACGCGAGCGTCAGCAACTGGAGGAACGCGAGCGTCAGCAACTGGAGGAACGCGATCGCTACGAGCGCTGGTGGATGCGGGAACCCTTTGCAGTCCCGGTTTCTAACCCCCTTTAGTCCCGGTTTTGAAACCGGGAGTACCAATCCGGGACTANAGATCGCTATCTTTAGTCCCGGGTGAAATAACCGGGGCTAAAA | |||||||||
gi|117252131|gb|CT844316.1|CT844316 CT844316 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): TTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTACACGGGTGGAGAAGTGCTTTTTAGTCCCGGTTTGTAACCCCCCTTTAATCTTGGTTGTCCAACCGGGACTACGAATCCGGGACTAAAAATAGCGATCTTTAGTCCCGTTTGGAGTTACCAACCGGGACTAAAGAGGGAATAACAGCAGTACAGATGGTCCTCTTTCCTTTTTTTTTCTTTTTTATTTTCTCCCGAATCAAGTGGCATGCATATCCCTAAATCCCAAATCAAATTAACATCCCAAATCCACATCACAAATATTTAAGTTACTTATACACATAAATCAAATACATCGCAAATCCTAAAAAAAAATTACACAAATCAAATTACATCACAAGTTCTACAAAATTCATCGCAAATACATCACAAGTTCACATCGCACACAAATCAAATACATCACAGAATCATGCAATAAATCACAAATTCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|29623965|gb|CB628976.1|CB628976 OSIIEb04N19.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb04N19 3', mRNA sequence TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): AGATGCAGCAACTGGTACACGGGCGTCATTTACAGCAGATGCAGCAAATGGTACGCGAGCGTCAGCAACTGGAGGAACGCGAGCGTCAGCAACTGGAGGAACGCGATCGCTACGAGCGCTGGTGGATGCGGGAACCCTTTGCAGTCCCGGTTTCTAACCCCCTTTAGTCCCGGTTTTGAAACCGGGAGTACCAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTGAAATAACCGGGGCTAAAAATCGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCGAGCTGACCTTTTTTTTTTTGCATGGCCCTGTTGCTGCATATATATGTTTCAATACATATATATGCATACATATATATATATATATGTATATATATATATTATATTATATTATATGTATATACATGCATAATATATATGTATTTATACATATATATGTTATGCAAATGCATATGTACTGTATATAGATATATATATGACCAAAATATATTTACATTATAGAAAATGTGTACACATGCATATAGAAACATATGTAGTCATGTATTAATTACAATCCATTATATGTCCTAGCTAGCTACGATTTCGACGTAGTAGTACTCGCTGCTAGCTCAGAAGCTAAGGACCGGTGAATTGTGTTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTCTTCGTTGATGAATCCCATGAGTTGTTCTTGAACCGCCGCGATAAATTCCTTGTGTGTGGTCAGGTTATCCCTCATGCAAATAAACTATATGAATGTATGAAATTGATTAGTAATGAAGCAAGAAATTGCTACGTAATGAAATTTTGAATTTAAAAAAAAG | |||||||||
gi|163928936|gb|EG709764.1|EG709764 Os5MPREST1446 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-F1B11SA, mRNA TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): CGGCCGGGGGCGGATGCCTCCCGCAGTTCCAAGCGGCCGCGCCGTCGTCGCCTCATCGTCCGCCGCGGCGGCGGAGATGGGGAATTTCTGAGCTAGGGTTAAGTCTAGTGAATCACCCACATATGCCCACATTAACACAAAACGAGCCCAATGGGCCTACGATTCAGTGGAGAGTGCCCCAGCAGCGAGTGCCCTGTCTTCGCCCATCGCCTGACGCCGCACTTCGCCTCTGCGCCTGACTGCCGTCAGCGGCCTGCCGGAGTTGGAGGTGGAGGGTGTTGGTACGAGCGGGCGGCGCCATACCTCGCCCTACCGAGTCCTCTGCAACTGTTCATAACCCTTTGTAGTCCCAGTTTTTCAACCGGGACTACGAATCCGGGACTAAAGATCGTTATCTTTAGTCCCGGGTGAAATAACCGGGAGTAAAAATCCATTTTTAGTCCCAATTGGTGTTATCAATCGAGACTAAAGATAGAGCATTTTTAGTCCCGGTTGGAAATAGAGTTAGGCTAGCTAGATACGG | |||||||||
gi|117229377|gb|CT859787.1|CT859787 CT859787 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): GTAGGCCTTCCAGGCCAGTCGAGACGACGCGACCTGCGAGTGGAGCATCAAGAAATCGAACGTCAGTTACAAGAGATGCAGCAACTGGAACGCGAGCGTCAGCAACTGGAGCAACAAGAAATCGAACGTCAGTTACCCTCGCGTCAGCAACTGGAGCAACAAGAAATCAAACGTCAGTTACAAGACATGGAACGCGAGCGTCAGCTACACCGGTGGAGAAACTTTGTAACCGGTGGAGAAACTTTGTAACCCCCCTTTAGTCCCGGTTTCCAAACCGGGACTACCAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTGGTAGTCCCGGTTTGGAAACCGGGACTAAAGGGGGGTTACAAAGTTTCTCCACCGGTTACAAAGTTTCTCCACCGGTGTAGCTGACGCTCGCGTTCCATGTCTTGTAACTGACGTTTGATTTCTTGTTGCTCCAGTTGCTGACGCGAGGGTAACTGACGTTCGATTTCTTGTTGCTCCAGTTGCTGACGCTCGCGTTCCAGTTGCTGCATCTCTTGTAACTGACGTTCGATTTCTTGATGCTCCACTCGCAGGTCGCGTCGTCTCGACTGGCCTGGAAGGCCTAC | |||||||||
gi|66929560|gb|CX116408.1|CX116408 EI104D17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTAGTCCCGGATTGGTAGTCC EST sequence (targeted fragment marked with yellow): AAACAACTGTCTCAAAATCAGTTAATTAGTAGCTTAGATAGCAAAGATCATCGGAGGATCGGCGATGGCGGCGGCGCTCAGGACCACCGGCGGCCGGCGGCTGGCGGCGGTGCTCGTCATGATGCTGTTCGTCTTGGCGGCAGCGCTGCTGGAGGCGCCAGCGATGGCCTCCGCCGCGAGGGTGTTGCTTCAAAGTGGACAGCTTCCGACTCCGTATCCGACCTGCAATCCAGGCCAATATCCATGCCCATCGCGTACTACTGTGCCATGATTCACTGGTGGAGAAATCGTTTGTAGTCCCGGTTCGTAATCCCCCTTTAGTCCCGGTTGTCTAATCGGGACTACGAATCCGAGACTAAAAATAGCGATTTTTAGTCCCGTGTGAAATAACCGGGACTAAAGATCGATTTTTAGTCCCGGTTGGTAACACGAACCGGGACTAAAGATCGGTCAGCCACGTGGCTGGCTGATCCATCTTTAGTCTCGGTTGGTGTTACCAACGGGACTAAAGATCTATGTACCATTTTTTTTTATTTGCATTGCCATGTTTGCTGCATGGTTGATTATACACACCATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATACATATATACCTATATATATATACCTATATATATGCGCATGTTATATGTCACACAACAATTTACCCGCTTTTCATGTTAAAGGCTCAACTTAATGACACATTTGTTGCCAAATATTAAACCAAGAGAAGAGCCCAATAAAAGAATTATAACGCACATAACAAACGAGACCACATGGAGGCGAAAAAGAACTAAGAGACTG | |||||||||