miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTAGTCCCGGTTGGTGTTACC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|29624641|gb|CB629652.1|CB629652 OSIIEb06B02.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06B02 5', mRNA sequence

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||.|||||
AATCAGGGCCAACCATAATGG

EST sequence (targeted fragment marked with yellow):
TGGAGGAAGAGGCGTAGAGATAAGGCTGCCCGTTTCCTCCTCCTCCTCGATCTCGTAGATGGCAGATGCCTCGTACTCTCCGCCACGATCTTTTGTTCTGGTTGGTAATACCAACCGGGACTAAAGATAGTAGGCATCTTTTTTCCCGGTTGGTGTTACCAACCGGGACTAAAAATAGCCAACGGGGACTAAAGATTAAAAAGCAGCTCTAAACTTTTGAACTGGGGCTAAAGATAATCTTTAATCCCGGTTTTTATTGCAACCGGGACTATCGTGGATTTTGGCCGACTGAGCAAATATGGTTTCTCCACCAGTGTAAATTCGGAACGTAACTTTTAATTTAGAAGTGAAGATATTATTAGCTTTACAGCACGGCATCAGCGAAATGACAGCAATATTAGTTTTATCAAGGCGAAATCGTACAAGTTATTGGGGTATCTATTTGTAAACTGGATTATCTTTTATATATTATCTACCAGTCACTTTTTAACTTCTAAATAACAATATTTACGTGCCAAACTTTTTTTTCGGATGAGACACATATACTGTGTTATAACTTTTTATTTTTTTAAAAAAAATACACTTCAGTGTAGATCTTACGAACATTAACAACTTATAATATATTTAGATTAATCCAGTAGAAGTATGGTAATGAAAATTAAAAGTCATACTAAATGTGTAGTTTTTCGGATTGTACAGTTCAGTTGAGTCGGTTAAGAAAAAAATTGAAGCAATTAATTGATAGATATATAGAGTGATTGCCATGTGCTTTGCCATCTCAGTGCATGCTGATTCATACGCCAATATCTAACTGATCGTCGGCATGCTGGACCAAT



gi|88717550|gb|CI741060.1|CI741060 CI741060 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||. .| |||
AATCAGGGCCAACTTTATTGG

EST sequence (targeted fragment marked with yellow):
TGTGTGTTGCATGATCTGAGATGTATAATCTGTGATATATTTGGTTCGTGTATAATTCTCTTAAGATTTGTGATGTATTTGATTTGTGTGTATAAGTAACTTAAGATTCATGATGTGAATGTCTTAGGATGTTACTTTGATTTGAGGTTTGATTTGGGATATGTATCCCACTTGATTTGGGGATATGTATCCCACTTGATTTGGGAGAAAATACAGGGATTAAACTCTAGCTAAAAAACAATAAAAAAAAGACTGTCGCTACCCTCTCTTTACCCCCGGTACTAAAGATGGATATTTAGTTCTGGTTATTTCAACCGGGACTAAAGATGCGCATCTTTACTCCCGGATTCATA



gi|66913874|gb|CX100722.1|CX100722 RECm1627 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TTAGTCCCGGTTGGTGTTACC
|||||||||||||| .||||
TATCAGGGCCAACCA-GATGG

EST sequence (targeted fragment marked with yellow):
CGCGTCCGCCCACGCGTCCGCCGAAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGGTTGTGGATGCGCTTTGTGACGTTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAGGCCGAGAAGGACTTGCAGCCCTGGATTGCTCGAGATGATGAGCAAGGTCAGAAGATGTGGAGAGTCAACCAGCGAATAGTTAAGCTGATAGCAGAGCTTATGAGGAACCACGATAGCCCAGAAGCATTGGTGATCCTTGCTAGTGCTTCAGATCTTCTTCTTCGAGCAACTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAGTGCCGTCTATCAACCACCATCCGCTGTCTTTCGCACCCCAGCGCGCATGTCCGTGCACTCAGCATGTCCGTCCTTCGCGACATCTTGAACAGCGGACAAATAAACTCCAGTAAGCTCATCCAAGGGGAACACCGGAATGGCATCCAGAGCCCAACCTACCAGTGCTTGGCAGCAAGCATCATCAACTGGCAAGCCGATGTGGAGAGATGCATAGAGTGGGAAGCCCACAGCCGCCGCGCCACCGGGCTGACGCTCGCCTTCCTCACCGCGGCGGCGAAGGAGCTCGGCTGCCCACTCACTTGCTGACAAGGCCACACCATGACTGTCACTGCAAGCAGCTGCTGTAGGATCAGCGAGTAGGAAAGGATGACTTGCCGGTCAGTTTCCTGAGATGTGATTTAAGACTGATATAAGCTGATGTTCCCAAGCATGATACGGGGCTTGCTCCCAAGATGTGATTTTTACTTTACTTTTGGTTAATGTGCTACCCGCTGACATTAGAATGTGCACGCATTATGAAAAGTGGTTGTGCTGTAACTGGTATGTCGGTACCGTACACTCTTCTCCTTTGGTAACGGGGGACAGCAGGGATATCCTCACCGCGGGGGACCACTCCAGTTCCTGGGGAACTGCAATGAATCTCGCATTCCGTGGGCTCCACACACAACACCACACCACGCACACCATCACACCAGACACAGCGGCGCCACACCCACACGACACGGGCGGTAGACCAACCGGGACTATGAACTGCGATATGACCAACGATATACGACGGAGCGTGCGCTCANGTNNCAGCCGAGCAGCCGCACGCAGCAGCACCCGCGCCACTACACCCCAGCACCAGCACCCCGCAGCCACAACGCTCACCTGCCTAACACCCCACCGCGCACTCTCAGGCCGGTCGCTAACCAGCCCGACTCAACAGCAACGCATCCACCAGCACCGACACAGCAGCCCCGCAGCAGCACCACACCGCCCAACCCCCGCCCACACAACGTCACCGACCCGCCGCCCCGCCACCGAGCACACCCAAACCCACCAGCACACCACGCCAGCCCCGCCACCGACGAGATACAACGAGCCAGGACAACA



gi|86498997|gb|CI141630.1|CI141630 CI141630 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa

TTAGTCCCGGTTGGTGTTACC
||||||| |||||||| .|||
AATCAGGACCAACCACTGTGG

EST sequence (targeted fragment marked with yellow):
GTTGGTGTCACCAACCAGGACTAAAGATGGATCTTTAGTCCCGGTTATTTCATCCAGGACTAAAGATAGCGATCTTTAGTCCCGGATTGCTACTCCCGGTTGGAAAACCGGGACTAAAGGGGTTACCAACCGAGAGGAAATATGGTTTCTCTACCAGTAATACAATGTTACCTATCATTTGCATGCGACTTAAATAGTTATAAAAAAATTAAAAAACTTTAGTAGCATCGATTGTGATGATATAAGTCTATACGCAAATATGCATGACTAAATTTGATCTACAATTAGAGAAAAAAATAATAAAATTAAATAGTGAAAAGTACCCTTACAACGCAGATAAAATTTGTTATTTTGGTTACTTCATATGTTGATCGAATTTGGACTTGCATGTTTGTATAGTGTCTTATATCTTTATAATCTATCTTATCAAATTTTATAAAATTTTTATATAACTGTTTAAATTACATGCCTACACCTATGTGTAAAATATACTTACCCGTAATAAGGTTTCGCTCTATTTTCAGTTACTTGATCAAGTTCGTCCATTTTTTTGCTTTAAAAGAACCAGCACAACAGTACATGCTAATTAAACACCTTCATTAGTACGTACAGCGC



gi|66929560|gb|CX116408.1|CX116408 EI104D17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TTAGTCCCGGTTGGTGTTACC
|||||||||||| ||||||||
AATCAGGGCCAAGCACAATGG

EST sequence (targeted fragment marked with yellow):
AAACAACTGTCTCAAAATCAGTTAATTAGTAGCTTAGATAGCAAAGATCATCGGAGGATCGGCGATGGCGGCGGCGCTCAGGACCACCGGCGGCCGGCGGCTGGCGGCGGTGCTCGTCATGATGCTGTTCGTCTTGGCGGCAGCGCTGCTGGAGGCGCCAGCGATGGCCTCCGCCGCGAGGGTGTTGCTTCAAAGTGGACAGCTTCCGACTCCGTATCCGACCTGCAATCCAGGCCAATATCCATGCCCATCGCGTACTACTGTGCCATGATTCACTGGTGGAGAAATCGTTTGTAGTCCCGGTTCGTAATCCCCCTTTAGTCCCGGTTGTCTAATCGGGACTACGAATCCGAGACTAAAAATAGCGATTTTTAGTCCCGTGTGAAATAACCGGGACTAAAGATCGATTTTTAGTCCCGGTTGGTAACACGAACCGGGACTAAAGATCGGTCAGCCACGTGGCTGGCTGATCCATCTTTAGTCTCGGTTGGTGTTACCAACGGGACTAAAGATCTATGTACCATTTTTTTTTATTTGCATTGCCATGTTTGCTGCATGGTTGATTATACACACCATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATACATATATACCTATATATATATACCTATATATATGCGCATGTTATATGTCACACAACAATTTACCCGCTTTTCATGTTAAAGGCTCAACTTAATGACACATTTGTTGCCAAATATTAAACCAAGAGAAGAGCCCAATAAAAGAATTATAACGCACATAACAAACGAGACCACATGGAGGCGAAAAAGAACTAAGAGACTG



gi|86852949|gb|CI323258.1|CI323258 CI323258 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTAGTCCCGGTTGGTGTTACC
|||.|||||||| ||.|.|||
AATTAGGGCCAAGCATAGTGG

EST sequence (targeted fragment marked with yellow):
GGGAAGAGATTTGTGTAGTTCCAACTCGATTTGGGAAAAAATAATGAAAAAAAAAAGTGGCTACCCAGGACTGGCGCTGCCATCGCCATCTTTAATCCCAGTTGCTAACCGGGACTGGCGCTGCCATCGCCATTTTTAATCCTGGTTGGTGATACGAACCGGGATTAAAGATCATTTTTATCTCCCGGTTATTTCACCCGGGATTAAAGATGAGTATCTTTAGTCCCGGATTGTACTCCCGATTGCAAAACCGGAACTATAGGGGGTTACTAACCGGGAGGAAAAACCCTTTCTTTACCACGTGGATCATCCTCCTCTATAAATGGGTTCTCATCCATAGCCGTCTTATCCTCCAATTCAACCCCATCCAACCCCTCCAAGAAGCTCTAAGCCACCCATTCACCTTCTATTAGACCCATCTTGTGGTAGTACTCTATGAGCTCGACCAATCGCAGTAGGGT



gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||. ||||
AATCAGGGCCAACCATTATGG

EST sequence (targeted fragment marked with yellow):
TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA



gi|88694693|gb|CI738731.1|CI738731 CI738731 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||||||||
AATCAGGGCCAACCACAATGG

EST sequence (targeted fragment marked with yellow):
GTTAAAAAGGGTAACGGACATATTTGATCTTTACTCGGGCATATTTGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCATCTTTAGCCCCGGTTTTTATTGCAACCAGGACTATTGTGGAATTCGGCCGACCGACGAAAGATGGTTTCTCCACCAGTGGTTATGATTCTTCTGTTTGGAAAGAAAATATAAAAAAGATTATACGAAGGTTCAAAAAAAACTCGTTATTAATCCGATGCTAGATAAACCTTAGGTCAGTGTCACGTATACGAAGAGGGTGAAATGCGATGAGCCTCATCAATTTTATGCCTACAAGAATAATGCATGT



gi|88724795|gb|CI748054.1|CI748054 CI748054 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||||||||
AATCAGGGCCAACCACAATGG

EST sequence (targeted fragment marked with yellow):
GTTAAAAAGGGTAACGGACATATTTGATCTTTACTCGGGCATATTTGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCATCTTCAGCCCCGGTTTTCATTGCAACCAGGACTATTGTGGAATTCGGCCGACCGACCAAAGATGGTCTCTCCACCAGTGGTTATGATTCTCCTGTCTGGAAAGAAAATATAAAAAAGATTATACGAAGGTTCAAAAAAAACTCGTTATTAATCCGATGCTAGATAAACCTTAGGTCAGTGTCCCGTATACGAAGAGGGTGAAATGCGATGAGCCTCATCAATTTTATGCCTACAAGAATAATGCATGTGTATGTGCA



gi|29623965|gb|CB628976.1|CB628976 OSIIEb04N19.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb04N19 3', mRNA sequence

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||||||||
AATCAGGGCCAACCACAATGG

EST sequence (targeted fragment marked with yellow):
AGATGCAGCAACTGGTACACGGGCGTCATTTACAGCAGATGCAGCAAATGGTACGCGAGCGTCAGCAACTGGAGGAACGCGAGCGTCAGCAACTGGAGGAACGCGATCGCTACGAGCGCTGGTGGATGCGGGAACCCTTTGCAGTCCCGGTTTCTAACCCCCTTTAGTCCCGGTTTTGAAACCGGGAGTACCAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTGAAATAACCGGGGCTAAAAATCGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCGAGCTGACCTTTTTTTTTTTGCATGGCCCTGTTGCTGCATATATATGTTTCAATACATATATATGCATACATATATATATATATATGTATATATATATATTATATTATATTATATGTATATACATGCATAATATATATGTATTTATACATATATATGTTATGCAAATGCATATGTACTGTATATAGATATATATATGACCAAAATATATTTACATTATAGAAAATGTGTACACATGCATATAGAAACATATGTAGTCATGTATTAATTACAATCCATTATATGTCCTAGCTAGCTACGATTTCGACGTAGTAGTACTCGCTGCTAGCTCAGAAGCTAAGGACCGGTGAATTGTGTTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTCTTCGTTGATGAATCCCATGAGTTGTTCTTGAACCGCCGCGATAAATTCCTTGTGTGTGGTCAGGTTATCCCTCATGCAAATAAACTATATGAATGTATGAAATTGATTAGTAATGAAGCAAGAAATTGCTACGTAATGAAATTTTGAATTTAAAAAAAAG



gi|112786169|gb|EE592203.1|EE592203 FU_RCC01a-1-G01.seq Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mR

TTAGTCCCGGTTGGTGTTACC
||||| |||||||||||||
AATCATGGCCAACCACAATTA

EST sequence (targeted fragment marked with yellow):
CCCCCCCCCTGTTATACAAGATGTCCTTAACAATGGGCAGCACATTGAGGTACCAGCAGAGTTCAAGTCAAGCCTTAACACTTACCTCGCCAGACTTATCCTACTCCCCTGTTCGTTCACTTGCGGAAATAATTGCTTTCAACGATGCACATCCTATTGAGGAGAGACTAAAGGATTTTGGGCAGCTCATCTTCCTGGTAGCTGAGAACACTACTGGCATCGGCGCACTCGAGAGAGCCATAATCCATCAACTAAACAAGCTTTCAGCTGACGGACTGGAGAAGCTAATGAAGGATGAGCAGCTGGATGCAATTATCACGCCCAATGACTCAGTTTCCACCGTTCTCGCCATTGGCGGCATGCCGGCAATCACCGTACCAGCTGGATACGGTAAGAGGGGAGTCCCCTTCGGAATTTGCTTTGGTGGATTGAAGGGCTATGAGCCGAGGCTAATTGAGATGGCTTATGCATTTGAGCAAGCTACCAAGGTCAGAAAACCCCCTAAGTTCTTGCGTGGAACATTTTAGCAAGATGGCAGACATGTCTTTAACTAGTAAAGCCAATAATTCACTGGGCTGATCGTTTATCCACTGCTGGGGAACCCATCTTTAGTCCCGGTTTATACCTCTTTTCGTATAATCCGGGACTAAACATATCCATTTTTAATACCGGTTGGTAATTAACACCAACCGGTACTAAAGATGCCACGGTAACACCAACCAGTAGTAGTAAAGATGGTAGCATCTGCCATGTGGCATCAGGTGGTACCATCTTTAGTACCGTGGCATCATGGCTTGGCATCAGAGAAAGGTCCCTAAGTAATTCTTGCATGGAACATTTTAGCAAGATGATAGACATGTTTTTAACTAGTAAAGCAAGGATGATTCAGTGAGCTGATCGTTTATCGCAACGAAAAAAGGTTAAGAAAAAAA



gi|88727841|gb|CI749353.1|CI749353 CI749353 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||. .| |||
AATCAGGGCCAACTTTATTGG

EST sequence (targeted fragment marked with yellow):
GTGTGTGTTGCATGATCTGACATGTATAATCTGTGATATATTCGGTTTGTGTATAATTTCCTCAACCATTTGTGATGTATTTGATTTGTGTGTATAACTAACTTAAGATTCATGATGTGAATGTTTNAGGATGTTACTTTGATTTGAGGTTTGATTTGGGATATGTATCCCACTCGATCTGGGGATATGTATCCCACTTGATTTGGGAGAAAATACAGGGATTAAACTCTAGCTAAAAAACAATAAAAAAAAGACTGTCGCTACCCTCTCTTTACCCCCGGTACTAAAGATGGATATTTAGTTCTGGTTATTTCAACCGGGACTAAAGATGCGCATCTTTACTCCCGGATTCATAG



gi|88330140|gb|CI658443.1|CI658443 CI658443 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||||||||||||.|||||
TATCAGGGCCAACCATAATGG

EST sequence (targeted fragment marked with yellow):
GGTTGGTAATACCAACCGGGACTATAGATCTCGGGGATCTTTAGCCCCGGTTGGTAACACGAACTGGGACTAAAGTCCCACCCCTATATATATGTCTTCTTCCTCCTCCAGTTGCCCGAGCAAGCTTCAAAATTTCTTCAAAAAAGAGGGGAGGTCATGCCAAAATTTCTAGTGAATTTATTTTGGTGATTACATACAAATCGGAGGTGCCTAAAAGATGGATTGGCAATAGATGTACCCTGACCGGCGGTCCACAGAGTTTATTGACGGCGTGCACTATTTTTTGAGAGTGGCCGAAGCTAACAGGCAAAGGGGTTTTATTTGTTGTCCATGCAATAAGTGTAAGAATCAGAAGGCTAGTGGAAGTCAACCCTCCGTTGGACAGAAGAGGGCATGC



gi|88259111|gb|CI363404.1|CI363404 CI363404 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TTAGTCCCGGTTGGTGTTACC
||||||||||||||||| |
AATCAGGGCCAACCACACTAT

EST sequence (targeted fragment marked with yellow):
GCTTTGATTTCGGAATATGCATCCAACTCGATTTGGGAGAAAATACAGGATTAAACTCTGGCTAAAAAACAATGAAAAAAAAAGAAAAAGAGACCTAATTGGACTGCCACTACCCTCTCTTTAGTCTCAGTTGATATCACACCAACCGGGACTAAAATCCATCTTTAGTTCGGGTTATTTCAATCGGGACTAAAGATGCGCCGGATTGCTAGTCCCGGTTGAAAAACGCCGGATTGCTAGTCCCGGTTGGAAAACCGCCGGTTGAAAAACCGGGACTAAATGGGTTACCAACCGGGAGTATAAATGGTTTCTGGTTGCTGAGCCGCCATCAAACCTAGGCGAGATGAACCATATATATATAATATCCGATGGAGTTGATGAATCGGCCGGCAAATCACATGATGCATTGATACATTAATGCATTTATATTTAATGAAGATGAAAATAAATTAG



gi|58656711|gb|CK045391.1|CK045391 42857siceh_0522.z1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gro

TTAGTCCCGGTTGGTGTTACC
||||||| |||||||. .|||
AATCAGGACCAACCATTGTGG

EST sequence (targeted fragment marked with yellow):
TATAGTCCCGGTTTCCTAACGGGACTACAATCTAGGACTAAAGATAGCTATCTTTAGTCCCGGGCGAAATAACCGGGAGTAAAGATCTATCTTTAGTCCCAGTTGATAACATCAACCGGGACTAAAGAGAGGGATCTTTAGTCCCGGTTGGTGTTACCAACCAGGACTAAAGAGAGGATAGGGACAATCCCGGATGGTCCTTTTTTTTGTTACTTTTTTATTTTCTTCCGAATCGGATGGCATGCACATCCCAAATCAAACCACAAATCCCAAATAAAGTAACATCTCAAATCCACATCACAAATCCCAAATCCACATCACAAATCTTAAAATTACTTATACACACAAATCTAAAACATCACAAATCCTAAAAAATTTACGCACAAATCAAATACATCACAGATTATACATCTCAAATCCATACAATGAATCACAAAATTACATCTAAGTGAATCACAAAATATCAAAAAAAAAAGAGATGGTCGTCTGCGCCGCACGCCT



gi|88694914|gb|CI738952.1|CI738952 CI738952 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||||||||||| |||||||
AATCAGGGCCAACAACAATGG

EST sequence (targeted fragment marked with yellow):
GTTGTCGGAATCTGTGATATATTTTGTAGAACTCGTGATGTAATTTTCCTAAGAGTTTGTGATGTATTTGGAGATGATCTATTCGAAGATTTGGAGATGTTCTGTGATATGTGAGAATTTGGATTTGGGATTCCTTGGCATGATTAGGGGATGGTGTGAAATCAATATTCAATACTAAAACAATGAAAAAGAGATAAAAAAGAAAAAATATCTTTAGTCCCGGTTGGTAACAACAACCGGGACTAAAGTCTCCCATCTTTACTCCGATTGTCGTTACCAACAACTACAGATTGATTTTTACTCCTGGTTATTTGAACCGGGATCAAAGATAGCGATCTTTACTCCCGGATCCGTAGTCCC



gi|117252131|gb|CT844316.1|CT844316 CT844316 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||. . ||
AATCAGGGCCAACCATTGAGG

EST sequence (targeted fragment marked with yellow):
TTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTACACGGGTGGAGAAGTGCTTTTTAGTCCCGGTTTGTAACCCCCCTTTAATCTTGGTTGTCCAACCGGGACTACGAATCCGGGACTAAAAATAGCGATCTTTAGTCCCGTTTGGAGTTACCAACCGGGACTAAAGAGGGAATAACAGCAGTACAGATGGTCCTCTTTCCTTTTTTTTTCTTTTTTATTTTCTCCCGAATCAAGTGGCATGCATATCCCTAAATCCCAAATCAAATTAACATCCCAAATCCACATCACAAATATTTAAGTTACTTATACACATAAATCAAATACATCGCAAATCCTAAAAAAAAATTACACAAATCAAATTACATCACAAGTTCTACAAAATTCATCGCAAATACATCACAAGTTCACATCGCACACAAATCAAATACATCACAGAATCATGCAATAAATCACAAATTCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC



gi|88730993|gb|CI754606.1|CI754606 CI754606 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||| |||||||||||||||
AATCATGGCCAACCACAATGG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTCCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAA



gi|88729868|gb|CI753089.1|CI753089 CI753089 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||||||.||||||.|||||
AATCAGGGTCAACCATAATGG

EST sequence (targeted fragment marked with yellow):
TTAGTCCCGGTTGGTTACTAAAGATCCTAACTTTACTCCCGGTTGGTGTGATCCCCGGGATCTTTAGTCCCGGTTGGTAACATCTTTAGTCCCGGTTGGTAATACCAACTGGGACTAAAAATCCCCCTTTATATATGTCTTCTTCCTTCTCCAGCCCGAGCAAGCTTTAAAATTTCTCAAAGAAAGAGGGGAGGTCATGCCAAAATTTCTTGTGAAATTTTTCTAGTGATTATATACAAATCGGAGGTGTCTAAAAGGTTAGTAACTTCATCCTCCAATATTTTTTGTCGTTATATTACTTTTGGAGCTATGTTTCAGACATTTTTTTTGTCTCCAAAACTTTGGTGTAAGTTGATGAGAGAGAAAATTCGTGTGGGGAAGAAG



gi|58597243|gb|CK007771.1|CK007771 27941rsicef_4037.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G

TTAGTCCCGGTTGGTGTTACC
||||| |||||||||. .|||
AATCAAGGCCAACCATTGTGG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGGGAGGCGATGCGGCCACACTGAGAGCCATCGCAGCCGTGAAGATGGCTGGGAAGGTGTGGAGCAAAGTGCCGCTGCATTGGTCTGGGGCTACGAGACGGGATGAAGGAATGGATATTGCGACCAATGGAGGTGAAAGCATTCTACAGTCCACCGTGAGCGTGAGTTGAAATTATCTCGCCGCAGGTACGAGAGCGTCGGGTAGTATTCCACCGCCGGCAACGGCCGCTTCGCTAGGGGAACATAGCCGGAGGTTTTAGCACAACCGCCGGACAAGTGGCGACATTCGTGTTCTTCCTCGCCCATATGCTGCACTGATTAAAGAAGAACACCGACGAGCTGTTCTTCATTTCTTCATCCCGTCGATGTCCGGGATGCGGAACAGCTCGCCGCTGATAGTGTTGCAGATGAAGCGCTTGCACTGGTGGAGAAACCTTTTGTAGTCCCGGTTCGTAACCCCCTTTAGTCCCGGTTGGTGTTACCAACCGGAACTAAAGATCGATCTGACCTTTTTTTTTTCATGGCCCTGTTGCTGCATGGTTTATATATATATATATATATATATATATA



gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||||||||||||||..| |
AATCAGGGCCAACCACGGTTG

EST sequence (targeted fragment marked with yellow):
TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA



gi|29664347|gb|CB660622.1|CB660622 OSJNEd02J11.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd02J11 5', mRNA sequence

TTAGTCCCGGTTGGTGTTACC
|||||||||||||.||||| |
AATCAGGGCCAACTACAATAG

EST sequence (targeted fragment marked with yellow):
CCTTTAAGACAGATCAAATCTCTCCCCCTCTTCCCTTTCCCCTTCCTCTCCTCTCCTACAGTCTATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGGGCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAATTTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGTATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTTGATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACTTGATTCGGGAGAAAATAAAAAAAGAAAAAAAAGAAAAGGGGATCATCTGGTACTGCCGCTATTCTTTCTTTACTCTCGGTTGATAACATCAACCGGGACTAAAGATCCCTCTCTTTAGTCCGGATGGTCCATCTTTAGTCTTGGATTCCTATTCCGGTTGGAAAACCGAGACTAAAAGGGTTACTAACCGGGAGTAAAAATAGTTTCCACCTATATATAAAGTAAAATATATGACTGATTCAATATGTCATCTGAGGTCCAACGTGTAACGATCGATCCAATCGCCATCGTAGCACCCACTGTGGCGAGAAATTTGTATTTAGACCCCCCGTGCT



gi|88555731|gb|CI486009.1|CI486009 CI486009 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa

TTAGTCCCGGTTGGTGTTACC
||||||||||||||. .|||
TATCAGGGCCAACCATTGTGG

EST sequence (targeted fragment marked with yellow):
CGGGAGAAAATACATAGATTAACACTAGCCATTAGCAAATCAACAACAAAATAATAATAAAAAAAATCTCGAGGAACTGTCGCTTCCCCTCTTTAGTCCCGGTTGGTAGATTCCCTCTCTTTACTCCCGGTTGGTGTTACCAACCGGGACTATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTAAAGGGGGGTTATCAACCGGGACTACAAACGGTTTCTCCACCAGTGTGAGATGCACACGATAGTATGCATCATACACTTGTTATTTGACTATACAAGTAATTGAAATTCGATCAACAACAACCATAAGGAAAGAGTTGAAAGTTGGCGGGTGCCATGTTGCACACATATGGCAGTTGCAT



gi|88694009|gb|CI738047.1|CI738047 CI738047 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||. . ||
AATCAGGGCCAACCATTGAGG

EST sequence (targeted fragment marked with yellow):
GGTGGATTTGGGATGTTAATTTGATTTGGGATTTGGGGATATGCATGCCACTTAATTCGGGAGAAAATAAAAAAGAAAAAAAAGAAAGATGACCATCTGTACTGCTGTTATTCCCTCTTTAGTCTCGGTTGGTAGACCTTATCTTTAGTTCCGGTTGGAGTTACCAACCGGGACTAAAGATCGATCTTTTGTCCCGGTTATTTCACCCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGTCCGGGGTTACGAACCGGGACTAAAAAGCATTTCTCCACCAGTGATGGAAAAGTTAAAGTTCGGAGAACTGGGCCAAGCAGCATATGGAGGCGTCGTC



gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||| |||||||||||. .|||
AATGAGGGCCAACCATTGTGG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG



gi|29624641|gb|CB629652.1|CB629652 OSIIEb06B02.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06B02 5', mRNA sequence

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||. .|||
AATCAGGGCCAACCATTGTGG

EST sequence (targeted fragment marked with yellow):
TGGAGGAAGAGGCGTAGAGATAAGGCTGCCCGTTTCCTCCTCCTCCTCGATCTCGTAGATGGCAGATGCCTCGTACTCTCCGCCACGATCTTTTGTTCTGGTTGGTAATACCAACCGGGACTAAAGATAGTAGGCATCTTTTTTCCCGGTTGGTGTTACCAACCGGGACTAAAAATAGCCAACGGGGACTAAAGATTAAAAAGCAGCTCTAAACTTTTGAACTGGGGCTAAAGATAATCTTTAATCCCGGTTTTTATTGCAACCGGGACTATCGTGGATTTTGGCCGACTGAGCAAATATGGTTTCTCCACCAGTGTAAATTCGGAACGTAACTTTTAATTTAGAAGTGAAGATATTATTAGCTTTACAGCACGGCATCAGCGAAATGACAGCAATATTAGTTTTATCAAGGCGAAATCGTACAAGTTATTGGGGTATCTATTTGTAAACTGGATTATCTTTTATATATTATCTACCAGTCACTTTTTAACTTCTAAATAACAATATTTACGTGCCAAACTTTTTTTTCGGATGAGACACATATACTGTGTTATAACTTTTTATTTTTTTAAAAAAAATACACTTCAGTGTAGATCTTACGAACATTAACAACTTATAATATATTTAGATTAATCCAGTAGAAGTATGGTAATGAAAATTAAAAGTCATACTAAATGTGTAGTTTTTCGGATTGTACAGTTCAGTTGAGTCGGTTAAGAAAAAAATTGAAGCAATTAATTGATAGATATATAGAGTGATTGCCATGTGCTTTGCCATCTCAGTGCATGCTGATTCATACGCCAATATCTAACTGATCGTCGGCATGCTGGACCAAT



gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||||||||||||. |||
TATCAGGGCCAACCATTTTGG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG



gi|88330140|gb|CI658443.1|CI658443 CI658443 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TTAGTCCCGGTTGGTGTTACC
||||||||.||| ||||||||
AATCAGGGTCAAGCACAATGG

EST sequence (targeted fragment marked with yellow):
GGTTGGTAATACCAACCGGGACTATAGATCTCGGGGATCTTTAGCCCCGGTTGGTAACACGAACTGGGACTAAAGTCCCACCCCTATATATATGTCTTCTTCCTCCTCCAGTTGCCCGAGCAAGCTTCAAAATTTCTTCAAAAAAGAGGGGAGGTCATGCCAAAATTTCTAGTGAATTTATTTTGGTGATTACATACAAATCGGAGGTGCCTAAAAGATGGATTGGCAATAGATGTACCCTGACCGGCGGTCCACAGAGTTTATTGACGGCGTGCACTATTTTTTGAGAGTGGCCGAAGCTAACAGGCAAAGGGGTTTTATTTGTTGTCCATGCAATAAGTGTAAGAATCAGAAGGCTAGTGGAAGTCAACCCTCCGTTGGACAGAAGAGGGCATGC



gi|88483895|gb|CI421166.1|CI421166 CI421166 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c

TTAGTCCCGGTTGGTGTTACC
|||||||.|||||||.||||
CATCAGGGTCAACCACGATGG

EST sequence (targeted fragment marked with yellow):
GTTGGTAAGATCATTTTTTTTGTCCCGCTTCAAAAAGTTGATAGGCCGTGTCAGGCCCCAAGGATCTTTAGTCCCGATTGGTATTATAAACCGGAATTAAATATCATCACTTTAGTCCCGATTGGTAGCACCAACTGGGACTACAAATCCGAAAAAACACGCCGGGTCGCACGTGTGCGCCTCCCCGCCCTTATCTCCTCGATATCTCCACGCCTTTTTAAGTCATTTGCGTCTCCTCCTCTCCCTCCAGATGCGTCCTCCCCTACCCTTCCTCCTCCTCCTCCCCCTCCCCTCCCCTCTCTGTCGGCGACGGCGTGACCAGGAGGGGGAGACGCGGCGCCAGCTGCGGTGGGGGAGGGGGCAGCGGCCCCGTCGGCGAGGTCTGTGAAAATTAATAGGTATGTGGAAAAAAAAA



gi|86897050|gb|CI317464.1|CI317464 CI317464 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTAGTCCCGGTTGGTGTTACC
|||||||||||||. .| |||
AATCAGGGCCAACTTTATTGG

EST sequence (targeted fragment marked with yellow):
ATATATTTTGTGATTCACTAATATGTATAATTTTGTGATGGATTGTATGGGTCTGAGATGTATAGTCTGTGATGTATTTGATTTGTGTGTAATTTTTTTAGGATTTGTGATGTATTTGATTTGTGTATGTTAGTAACTTTAAGATTTGTGATGTGGATTGGGATGTTACTTTGATTTGGGGATTTGGGGTTTGATTTGGGATGTGAATGCCACCCGATTCGGGAGAAAATAAAAAAGAAACAAGAAAAAAGAAAAGGGACCATCTAGACTGCCGCTATCCCTCTTTAGTCCTGGTTGGTGTAAAGAACTTTCTCTTTAATCCCGGTTTTTGCTACCAACCGGGACTAAAGATTTAGTCCGGTTATTTCAACCGGGACTAAAGATGGGCATCTTTGTCCCGGATTCCTACTCCTGGTTGGAAATCCAGGACTAAGGGGGTTACAACTGGGAGTAAACAAGGTTTCTCCACAGTGACTGTGCTCTCACACAGTGCATTCTACAGCTGAAATAGTCTCA



gi|89198071|gb|CI117549.1|CI117549 CI117549 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

TTAGTCCCGGTTGGTGTTACC
||||||||||||.|.. .|||
AATCAGGGCCAATCGTTGTGG

EST sequence (targeted fragment marked with yellow):
GAGATATGTCTCCCACNTTGATTGGGAGAAAATAAAAAAGAAAAAGGGGATCATCTCACTACCGCAACCCTCTCTTTAGTCCCGTTGGCCCCTCTCTTTAGTCCCGATTGGTGTTGCTAACCGGGACTAAAGATCTATTTTTAGTTCCGGGTATTTGAACCGGGAATAAAGATAGCGATTTTTAGTCCCGGATTGGTAGTCCTGGTTAACCGGGACTACAGGGGGTTGCGAACCGTGACTAAAAATATTTCTCCACCAGTGGTTGTAACAATATTGCAAAATGTACTGTACTTATTACATGGTCATCATCGTGGGCAACACCAGTCCAGAGCCTCTGAACTTGCTCTCGGTAATCTCGTCGATCCTTGTGGCCATCTCCGGCGACAGGTAGTTCGGCCAGCCCCCGACGACGCCTCGCCGGAAGAACTCGGCGTTCCGCATCGGCTCCTCCATCAGCTCAATCGTCCCTGACCTGTTCACCTCCGCGCCCGCTAGGCTCTCGAAGCTGCACGCCTTC



gi|29629679|gb|CB634688.1|CB634688 OSIIEb14F22.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb14F22 3', mRNA sequence

TTAGTCCCGGTTGGTGTTACC
|||||||||||||||||||||
AATCAGGGCCAACCACAATGG

EST sequence (targeted fragment marked with yellow):
ACAAAGTTTGATAATCCTATAGTCAGATATTACCCAAGAAACCTAATGAATTATGCTCACTTGGCTGGTTGTAAACAAATTATGTTCAATAGTACGCTGGTTGTAAACAAATAATTCTGGTCCCTAGGAGAAACAAAAGAATATTAATTTGCAGAATAAACCTATAATAACGTTGAAATATAATCGCTGGAGTAAGAGTATCAATTTGCAGAAGGTGCTGCTACATATGCATCTCTTGGTACGATTAATTCGGCGATTTCTCATAGGTAAGTATTGATTAGAGAAGCGGATAAAAAATTTCTCAATATGAATTAATGGTACTTCGATCACTATTAATTACTCCAGCCTCAAGTTACTAATTAAGGGGGGAGATCTACGCACAGCAGCCGATGTGTACTATTCATGTGATCATTAACACAGGGGGAGAAAGGGGTTTTACTCCCGGTTCGTAACCCCCTGTAGTCCCGGTTTCAACCAGGACTAGACTAAAGATCACTATCTTTAGTCCCTGATCTTTAGTCCCGGGTGAAAAAACCAGAAGTAAAAATCCATAAGATAGAGCCTTTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATAGAGCTAGCCTAGCTAGATCGGTTGCTTTATTTTCTTTTCTTCATTGTGTTTTTAATAATTTGATTTCGCTCCATCCCTATCCCAAAATCCCAAATAAATTATCCCCAAATCCTCAAATCCCCAAATCGGCCATATTCAAATAGATCACAAAATCTTAAAACAAAATTACATCACAACTTCTACAAAATTCATCACAAATACATCACATATTCACGCACATCACACACAAATCAAATACACATATCCAAATCACAAATTCT



gi|29664345|gb|CB660620.1|CB660620 OSJNEd02J10.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd02J10 5', mRNA sequence

TTAGTCCCGGTTGGTGTTACC
|||||||||||||.||||| |
AATCAGGGCCAACTACAATAG

EST sequence (targeted fragment marked with yellow):
CTCACACAGATCAAATCTCTCCCCCTCTTCCCTTTCCTCCTCCTCTCCTCTCCTACAGTCTATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGGGCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAATTTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGTATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTTGATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACTTGATTCGGGAGAAAATAAAAAAAGAAAAAAAAGAAAAGGGGATCATCTGGTACTGCCGCTATTCTTTCTTTACTCTCGGTTGATAACATCAACCGGGACTAAAGATCCCTCTCTTTAGTCCGGTTGGTCCATCTTTAGTCTTGGATTCCTATTCCGGTTGGAAAACCGAGACTAAAAGGGTTACTAACCGGGAGTAAAAATAGTTTCCACCTATATATAAAGTAAAATATATGACTGATTCAATATGTCATCTGAGGTCCAACGTGTAACGATCGATCGAATCGCCATCGTAGCACCCACTGTGGCGAGAAATTTGTATTTAGACCCCTCGTGCTATATAATATGCCTTCAAGTCAACTTCCAAACACTCCCAGACCTTTTGAGAAAAAAAATTCAAAAATATACTTTTTTTTTCATTGGG



gi|58656711|gb|CK045391.1|CK045391 42857siceh_0522.z1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gro

TTAGTCCCGGTTGGTGTTACC
|||||||||||||.||||| |
AATCAGGGCCAACTACAATAG

EST sequence (targeted fragment marked with yellow):
TATAGTCCCGGTTTCCTAACGGGACTACAATCTAGGACTAAAGATAGCTATCTTTAGTCCCGGGCGAAATAACCGGGAGTAAAGATCTATCTTTAGTCCCAGTTGATAACATCAACCGGGACTAAAGAGAGGGATCTTTAGTCCCGGTTGGTGTTACCAACCAGGACTAAAGAGAGGATAGGGACAATCCCGGATGGTCCTTTTTTTTGTTACTTTTTTATTTTCTTCCGAATCGGATGGCATGCACATCCCAAATCAAACCACAAATCCCAAATAAAGTAACATCTCAAATCCACATCACAAATCCCAAATCCACATCACAAATCTTAAAATTACTTATACACACAAATCTAAAACATCACAAATCCTAAAAAATTTACGCACAAATCAAATACATCACAGATTATACATCTCAAATCCATACAATGAATCACAAAATTACATCTAAGTGAATCACAAAATATCAAAAAAAAAAGAGATGGTCGTCTGCGCCGCACGCCT



gi|86902827|gb|CI312204.1|CI312204 CI312204 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTAGTCCCGGTTGGTGTTACC
.||||||||||||||. .| |
GATCAGGGCCAACCATTGTAG

EST sequence (targeted fragment marked with yellow):
AAATTATCCCCAAATCCTCAAATCCCCAAATCGGCCATATCCAAATACATCACAAAATCTTAAAAAAAATTACATCACAACTTCTACAAAATTCATCACAATACATCACATATTCACATCACACACAAATCAAATACACAGATCCGAATCATAAATTCTAAAAAAAAGAAAAAAAAGCCTGCTCCCACGCCGCCCGCCGCCGCGAGGCCTCCGGCCGCCCGGCCCTCCGCGCTGCCCGGCCGCCCGGCTCATCCATCATAGTGGGGATGATGGGGGAGGGAAAGGAGGAGAGGAGTTAAAAGGAGAGAAGGAAGAGGAAGAGATAAGGTTAGAGAGGAAGAGATAAGGCCACCCGTCTCCTCCTCNATCTTGCACATGCCTTGTACTNTTNGCCGNGCATGCCGATCTTTTGTTTCGGGTGATGTTACCAACCGGGACTAGAAATAGATCTTTAGTCTCGATTGNTGTAATAAAANATCTTTTAACACCCAACCCGANGANT