miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCTTTGAATCAAAGGGGGC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|29668980|gb|CB665255.1|CB665255 OSJNEd11I08.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd11I08 3', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
|||| ||||||||||||.||
AAGGTAACTTAGTTTCCTCCA

EST sequence (targeted fragment marked with yellow):
AAAAGGCAACCAAGTCAAGCAGAGAGCAATTTGGAACGCGGAGTTGGAGAAGTCACTTGTTGAAATCCTTTTCGAGTACAAAGTCAATGGTTGTAGAGGAGATAATGGCTGGACCACTAAAGGTTGGAATAGAATGGTGAAGGAATTCCACGCAGGGAACAAATGCGTATCATTCACCAAAAATCAAGTTCAAGAGGAGGGTCAACTGAAAAGAGATTACAAGATGTTGAAAGCGGTCAGACAACAAAGCGGGTCTTCTTGGAACGAGAAGAGATGCATGGTCGAGGGATCGCCAGCTATGTGGCAAAACTTGCAAATTATAAGTGGATTTGTGATCAATATCTTCCTTTGCATGTGATTTGTGATTTCTTTGATGCCTTACAATGATTTGTGGTTATGCTTTTGCATGTGTAGACATTCCCAAAGATCAAAAAGTTTCGCAACAACAAGGCCAGCTTTCCCTTGTATGATGCACTTGGTGAGCTATATGACGGCCATCTTGCTGAGGGAAAACACAACTGCACCTCCTTTGATTCAATGGAAGATGAGAAACCCCTGAGGCTAGTACAGGAATTGGAAGATGATAGTCAAGAGCAAGATGATGTTGTGCTGCTCGAAGACCAAAGAAACTCAAGAGAGGAAGAAACTGATGTTGTGCTGCTTGGAGACCAAAGAAACCCGAGAGACAAAGAAACTCAAGCTGAGGATTCAAGAATTGTTACTGAAGAGCAAAGAAGACAGGCTTTAATAGCAAAGAGGAGACAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC



gi|117212499|gb|CT857647.1|CT857647 CT857647 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TTCCTTTGAATCAAAGGGGGC
|||||||| || ||||||||
AAGGAAACCTAATTTCCCCCC

EST sequence (targeted fragment marked with yellow):
GGTTATGTTATACTCTTAATTAATACTCCATTGTACCGTTGATCTTTTAATTAATATTTGACTGTTCATTTTATTCTTTTTTATAAATATAAAAAAATTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCCCCTTTTATCCAAACCCCAACCCCCTTTTCGGTTCCCCAAACCCAAATTCCCCCCCCCCCCCCGGGGGTTCCCTTTTTGCCCCCCCCCCCTTTTGGATTTGAAACCCCATTTCCAAACAAAAGGTTCTTCCCCCGGGTTGGCGCCCCGGGAAAAATTTCGGATTTCCCCCCCCCCCTGGGGGAGGGGGTGCCCCTGGAAAAAAAATTAAATTTCCCGAAAAAAAAAAAAAAAATCCCCCGGCCCGGGGGCCCCCCCCCCCCTTGGCCCCCCCCCAAAAAAAATCCCAACCTTTCCCCTTTGGGGAAAAAAAAAGGGAAGGGGAACCCGGGAAAAAGCCTTTTTTTTTCCCCCCGGTTTTTGGTTTCCCACCCGAAAAATTTTATCCCTTTAATCAAAATAATTCCAAAAAAAAAATTTGTTTAAAAATTTGTTCCGGGGGTGGACCTTTTTCAACTTTGAAACAAAAAAAAATTTCCAAACACTTGGCCAAGAAAAAGAACCTCAAAGTTTCTTTTGTTTTGAAACGATTACCCAAAGCCCCGGGGCCCACCTTCCCCAAAAGAAACCCCCCCCCAAACGGTTTTTCCCCGGGGGCGGGCCCCCCGGGGGGGGGGTTTTTTTTTTTTTTTGGGGTTGGGGTTTCCCCGGGGGGGGGGACATCCCCCCCCCCTTTAATCCAAAGGAAAAAATTTTTTTATTTTTTTTCTCTTTTCCCGCCCAAAAAAAAAAGGGCCAAAAACCAAAAAAAGAAAAAAAAGAGGGCCCCACAACAAAAGGGGGGGGGGAAAAAAAAAAAAGAAAAAAAAGGGCCCCCCCAAAACCACCCAGAGGAGGGAAAAAAAAGGAAGGGGCACCCGGCGGCCCCCCCCCCCCCCGCGCGGGGCCCCCCACACGAAAAGGAGGAAAAAACTCCCCCCCGCGGAAACCAACACTCTCTTTGGAGAAAAAAAAAAAACTAGTGGGGGGGGGGGCCCCCCTTTTTCGGGCGGGGCGCGGGACCCCCCCCCCTTTGTGGCTCGCGAAAGAAAAAGAGGGGGGAGCCTTCCCCTGTGCGGCC



gi|29664588|gb|CB660863.1|CB660863 OSJNEd03A06.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd03A06 3', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
|||||||||||||||||||||
AAGGAAACTTAGTTTCCCCCG

EST sequence (targeted fragment marked with yellow):
TCTAGGGTAGAGTTTGAATTACCCCTAAACTATCATCCCGTTCGATTTCGTCTGAAATTATGATACGAGATATCCATTTTCTCCCTTTATTTTTACCCCCCCCAACTTATCAGGCAGGACAAGAAACCTCCCTACCCAGTCAAGAGTAATTATTTTTCCTGGGTGGCGCATAATAAAAAAAAGTTAAAAAATATGTTGGATGACACGCAGATTATTCTCGAGGATTTTTTCTTCTTCGGACAACCGCAATGTGTGAAAAAAGAGAACGTTGTTTTAATTGTACTTGTAAAGGGAGCGATATACTCCGTATAAAGTGACATTAGCTTAGGATGCGCCCTATGCTTAGGCCCCCTTTGATTCAAAGGAAATTTATAGGAATTTTAGAGGATTTCTTTCTTATAGGAATTTTTCCTATATAGCCCTCTGAATCAAAGGAAGGGATTTTATGTAATCTATTGAAATTCCTATGGATTGCCTAATGCCATGCAAGTTTTGGAGGAATTTTACCATGAGGTAAAACATCTGGAAAAAAAG



gi|88982532|gb|CI028001.1|CI028001 CI028001 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

TTCCTTTGAATCAAAGGGGGC
|| |||||||| ||||.|||
AAAGAAACTTAATTTCTCCCA

EST sequence (targeted fragment marked with yellow):
TTGAAACTGATTCTTCGTAATTAAGCTGTGTTTCTGGCTTTGGTCTCTGGCATACAAAGGAAGTGATACAGGTCGTCATGTACTGACATGTAAAAAGCCCAATTAGGCACAACGAGTGTCGCAAGACAAAGGAACCCTCTTTAATTCAAAGAAAGTGATCAGTGAGCTCTATCAACCGAGAAAAATGTTGACTTGATGAACCCTGTTTCTCGGTGGAGACGCCGGCAAGACCACCAAATCACCATCATCCATAAACGGATGATGGAGCTAGAAACCAGGGTCGTCCCACTGCAGGACAGCTGAGCCCACGTTCTGCTCCCTCTTGAGCTTGTCCTTGACGAACCAGTCGCAAACAAGGCCTGCGTTGAGCTCCTCAATGGGGACGCCTTCTTGCTCCGAAATCACTCTCAAGAGATTCAACGACGATATGGTGAGGCGGCAGAGGAATCGCTCGTGTGTGCTGA



gi|86833532|gb|CI336321.1|CI336321 CI336321 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTCCTTTGAATCAAAGGGGGC
|||| ||||||||||.| ||
AAGGCAACTTAGTTTTCGACG

EST sequence (targeted fragment marked with yellow):
CTACAAAATTGTAATTACCAAAAAGGCAGTTTCATATCTATGGGATGGAACAACAGAGCAGGTACAGATATTCTCAAGCAAAGAATTAAAGACAATTCTCAAGGTGAAGTCAAAATATACATGCTACAACAACAAAAAAAAAATGGCCTGGTTATTTTTCTTACCACTCTGGTGCTTTCCTCAGAACCAACCCAGGGGAGGCCAAACTAAGCAGCTTTTGATTCAACGGAAGACTTATACTAACCTAAATTTGCAAGGCAACGAACTTATTGAGATTGTTGACCGACTTCTCCGAGGTCGTACTCTCAGGTCCTTGAGACAGCTTTGATGGCCGAACCCACTCCCCGCGGTTCTCAGCGGG



gi|29621740|gb|CB626751.1|CB626751 OSIIEb01D10.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb01D10 3', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
|.||||||||| |||||||||
AGGGAAACTTACTTTCCCCCG

EST sequence (targeted fragment marked with yellow):
GAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACGAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTTTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCAATCTTTGCCCCCTTTGTTTTGTTCGCGGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCATGCCACCGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGGATTTTATTTCTATAGGAATTTTTTCTACAAAGCCCTTTGAATGAAAGAAATGAACCCTATGGAATCCTATGAAATTTTTATGGGATTTTAACAAGAGGTAAAACCTCATGG



gi|86519233|gb|CI159439.1|CI159439 CI159439 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft

TTCCTTTGAATCAAAGGGGGC
.|| |||||||| |||||||
GAGCAAACTTAGGTTCCCCCT

EST sequence (targeted fragment marked with yellow):
GTCGCGGAAAAGAATCCATCTATTCTCTGTTCCTCTTGGTTTTTTATCCAATTTGTGGCTCCTTCCCGCCCTCCGGCTTCCTCTCTCTCTCTCTCTCCCTTGCCTCCCCCCCCACTCCCATCGGATCCGTTCTACTCGTAGTCTCTCTGATAATGATGTTTACTCGAGTTGTTGAAAGCCTTTTGTTTTTCGTCTTTCCGTTCTTCCCCCTTGGATTCAAACGAGTCCGGCGAGAAACTTGTCGCGCAATTGTTTCGCCGTTGCGATCGCACGAGGAGGCATACCGGCCAATCGAGCAATCACCAAACCCGCCGAGTCCTTGTTGAGTCCCCTTCGGATCTCGTGAACGTACCGTACCGAGTCGAAATCTTCCTCGACGTCGGTACACCAAAACTCGACCCCTCGCCACTGCCCCGTGCCCTTCGCATCCGACTCGTCGTACCCCAACAGGTCTCCCAACCGGTGGTAGTGCGTCGCGAACAACGTCCGACACGCGTTGACCTGCAACAAGTGTTCGAGCGCGGCAAACGCGATCGCGACGCCGTCGATCGGGCTCGTCCCCCGCCCCAACTCGTCAAACAAGACGAGCGAACTCGACGTCGCGTGTGCGAGGATCGTCGTCGCCTCGTCCATCTCGATCATGAACGTCGATCG



gi|29640865|gb|CB645872.1|CB645872 OSJNEb07O17.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb07O17 3', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
||||| ||||||||||||. |
AAGGATACTTAGTTTCCCT-G

EST sequence (targeted fragment marked with yellow):
GGGTTAACCGCTCTTTGCGCGCTCACTCCGGCAGCTTACAGCCTTACACACTACTACAATCCAACCACACTTGGCTGGAGATTTGATCCGTAATCTCATATGGTGCTTCTCTGTTCTTACCATTCGCAGCCTCGCGTGCAAGCACATCACTCTAGGGAACCGAGGAAGGCGGCTGAGGACGTTGGAGGCGTTCATCGCGATCTTGACGCTGACGCAGCTGCTGTATCTGATTCTGCTCCACACCGGCTCTCTGGGTAGCAGCATGACGCTTGGCCTGAGCCGCAGGAACTGCGACGACGACGAGGAGCTGCGCTGCGACGAGATTCCTCGTGAAGAACTCTACACGAACAAGAAGCCAGCCATAGTCGCGGGTGCATGACCATCGTCCATGACAATCTGTTTCTTTTTTCTTTTTCTTTTTTTTTTGGGGGGGGGTTCACTGTGTTTGTAGTTCAGTTACTGGCTTACTGGTTGTCAGAATAGGATCTCTTTCATCTTCTAGGGCCCCTTTAATTCATAGGATTGACAAAGAATTTTTATAGTATTTAAATTTCTATGGATTTTTTACTACATGTCCCTTTGATTCATAGGAAAGAAATGAAACTTTCCATACAATTGTATTCTTATGCTTCACATTTCATAGGAAAAATAGCAAGATTTTAGGCTCTTTGTAAACTTTCCTTTGTTTTTCC



gi|38477620|gb|CF961753.1|CF961753 8414rsiced_12031.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic

TTCCTTTGAATCAAAGGGGGC
|||| ||||||||||||.|
AAGGTAACTTAGTTTCCTCAC

EST sequence (targeted fragment marked with yellow):
ACTAGTGGATCCCCGGGCTGCAGGCACAACTGCACTCCTTTGATTCAATGGAAGATGAGAAACCCCTGAGGCTAGTACAGGAATTGGAAGATGATAGTCAAGAGCAAGATGATGTTGTGCTGCTCGAAGACCAAAGAAACTCAAGAGAGGAAGAAACTGATGTTGTGCTGCTTGGAGACCAAAGAAACCCGAGAGACAAAGAAACTCAAGCTGAGGATTCAAGAATTGTTACTGAAGAGCAAAGAAGACAGGCTTTAATAGCAAAGAGGAGACAAAAAAAGAAGATAACAAGACTAGTAAGAATTCAAGAGTGGAGAGCATGATGGAGCGATAC



gi|218478297|gb|FG953595.1|FG953595 MA_PA64s_01406 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s

TTCCTTTGAATCAAAGGGGGC
||||||| ||||||||||| |
AAGGAAAGTTAGTTTCCCC-G

EST sequence (targeted fragment marked with yellow):
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAGGCATATTTCTTAGTTCGTATGATGGAATCTTGTTAGCTTCTACTCCCTCCGTAGTTATATTTGGAGGCTATGAGAGTGACCGGAAATGGCCGGAGGATGCCGGAGAATGTGCCGGCGGCGGCGGCCGCGGGTTTTTGATGAAAGCCGTGGTGGGGTCAGGACGTCAGGGCAGGGGTGTACTCTCACGGTCTCACCCCTATGGACCTTTTTCCACTTAGGTCCAATAATTAATACAAATTTATGAAAAAGGATCGTGCAAATGTAGAAGTATTACAAGATCTTTTGGATAGAAGAAATTCTTAGCCCCTTTGATTGAAAGGAAATTCATATGAATTTTAAAGGATTTCATTCTTATAGGAACTTTTCGTATATAGCTTTTGAATCAAAGGAATAAATCCTATAAAATTCATATGGAATGCCTCTTCCCATAAATTTTTGGAGGAAATTTACCATAAGGTACAACATCATGGAAAGAATCCTTTGACTCTTTATCTCTCCCTAAATTCATGTG



gi|29626809|gb|CB631820.1|CB631820 OSIIEb09K05.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb09K05 5', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
||||||..|||| |||.|.||
AAGGAAGTTTAGGTTCTCTCG

EST sequence (targeted fragment marked with yellow):
ATAGATGTGGCAAATGGAGGTTATTCTTGTGCTTGCCCAGGAAATTCTGATGATGGCAATCCCTACCTTCTTGATGATTGCAAACAAGAGTTTAACCCTACCCCGAAAAAGAATTGTTCTAGATCATGTGGTAGCACAAATATTCCTTTCCCGTTTGGGCTTGAGCCAGGCTGTTTTGCTAAGAGGAGATTTCAACTGAGTTGTGCATCAAATCGCACTCTTATTGGAAGACCACCTGCAAAATATGAAGTGACAAATATATCATTAGATGAAGGACTCCTTTATGTTAACAAGCTTTCAGAATTTGAAGATGCCAACACAAAGTATTTATCAGTATACTATGGTGGTTCTGGATATTTTGGCCAACAATTAATTTATGGTTTGGAAAAGTCTGATTTATCTGAAGAGTATGGTGTTTGGAAGTGGTCTGTGACCAATTTGACGTGTGAAGATGCAAAAAGCAAAAGTGCATATGCATGTGTTAGCACAAACAGTGAGTGTCTTGATGTTACACATGGGAAGCTATATATTGGTTATCGTTGCAAGTGCTCTCTTGGATTTGAAGGAAATCCTTATGTCCAAAATGGATGTACAGATATTGATGAATGCTCTATACCAAACTATTGTAATGGGACATGTTATAACTTTAAAGGAAGCTATATTTGTTGTCCTCATGGTATGTCTTATGATCGAGTAAGAAGGCAGTGCACTTCCAATAAGAGGCAAAATATTGTTTTAGGACTTACCATTGGGATTAGCAGTGGTTTTGGAGTTCTAGCTCTTACATTAATTGCAGCTATATTATT



gi|218481991|gb|FG957226.1|FG957226 MA_PA64s_05037 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s

TTCCTTTGAATCAAAGGGGGC
|||||| |||| |||||||||
AAGGAACCTTAATTTCCCCCG

EST sequence (targeted fragment marked with yellow):
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCTTCCCTGTAACCGCAGCAGAGTCGACAGTTGAACCTGAAAAGATCTTCTTTCTCCCAGCACCAGCACTAGCATCATCACCACAGGGCGAAGGCATGAACAACGTACGTCCTTCCATGGTCTCGTTCCAGGACAGCCTCTTCCTCTGTGACATGTTGTACTGCTAAATGTCCACGGCGCCGCACAGAGGCAGGTCGTTTCGCCTGGTTTCAGGATTGAGCAGGAGCTGCATGCGCTTGGATTGCTTGATCCATGATTGATAGTCCATTACAGTGCATCCTCGTTGGTGTCGTTTCTAGAACAGGACATGCGAATGTGAGTTCGCTATGCTGTGTGGTTGCATGTCTGGAACTGAGGCGGTGAGGCCCCCTTTAATTCCAAGGAAAGTCATAGCAATTTTGGAGGATTTCATTTCAATCGGATTTTGGAGTTTTGAGTGGAGAGCCTGACTCATCCTTATATTGTTGCGTCAAGCTTAAGTAAATTCCTCTAGATAGGAAGACGTGTTGTTTATTTATACTCTTGTTTTATATTATTAGATGTTTTAACTTTTTTCAAAAAAAAAAAAAAAACTCG



gi|58656228|gb|CK044908.1|CK044908 42865siceh_0532.z1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gro

TTCCTTTGAATCAAAGGGGGC
||||| |||||||||||| |
AAGGATACTTAGTTTCCCGAG

EST sequence (targeted fragment marked with yellow):
TACAGGGAGGTGGTGATTTATAAACACTGGCATGGTCACTAGACACTAGTAGAGGGTATATTTTTACCTTGGACCCTCCTCCTTTTTGGCATGCCAAGCAAGAGGCCCAGAGGCCTGGGGCAATGGCACTAGTCAGTTTGCATGAGGTGCCCCTCCCAGAGCAGACAACCCTGCAGGACTCTAGTTTAATCTTCTTCTCTATTCTCTCTTGTGTGGGCCCCCACAAGGAGTAGTCGTACATTTCAAAGGTTTTTTTTTAAGTACATTTCAAAGTTGAAGCAGTGGCACTTTGTGTGTGATGGATGCAATGCTTAACACACTAAACAAGTTAGGGCCCCTTTGAAATGGAGGATTAGCAAAGGAATTTTAGAGGATTCATTTTCCTAAGGATTTTTTCCTATAGAGCCCTTTGATTCATAGGAAGAGGATAGGAAAACTTTCATAGGATTGCATTCCTATGATCAATTCCATAGGAAAATAAGCAAGAGGTTAGACCTCTTGTGAAACTTTTCTTTGTTGAGTGTATCCTGTGGTATAATCAAATGGCT



gi|88213937|gb|CI213786.1|CI213786 CI213786 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic

TTCCTTTGAATCAAAGGGGGC
.|||||| |||||||| |||
GAGGAAAATTAGTTTCACCCC

EST sequence (targeted fragment marked with yellow):
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTTTTTGTCTTCTTAAGCCTCTGAGCTTTTTTTTTTATTGGGGGTACCCCTTCCTAGTTCGAATTGTACATAAATGCTACTCCATCTGTTTCATATTGTCCATATTCATATAGGTATTAATGAATCTAGACACATATACATGCCTAGATTCATTATCATTTATATAAATGTGAGCAATACTAGAAAGTTTTACATTGTGAAATGGAGGAAGTATTATTCCTTGACACACTTGAGAGCATGCAACGCTAGAATCACAGAGATGCATGATTCAACACAAAATGCAGAGCTCTGAGCTCCCCACTTTGATTAAAAGGAGATTATATGTCATCTGCCCTTAAAAAAAACAAGAAATGCAGAGAGACCCATGCTTATCACCTTGCAACTCGCAGTCTTCCTTGGCATTTGAACGAGCAGCTCACCGGCAACAACCGCAATCTCCAGAGTCCAGACGGA



gi|29672079|gb|CB668354.1|CB668354 OSJNEd16C19.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd16C19 3', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
||||| ||||||||||||. |
AAGGATACTTAGTTTCCCT-G

EST sequence (targeted fragment marked with yellow):
GCCCGGCCGCCCGGAGCGCCGCGCGTTGACGCGATCGCCCTGTGCTTGTGCATCTACCTGCAGATCTTGGAGGGAACACGTCGTCGGGGTACCTGCTAGTCTTCTCGCTGATGGCCGGGGTGGTCGGCGTGTGCTCGGTGCTCCCCAGGCTGCTCCATGTCAGGGCGTGGCGCGGCGAGACCCTGGCTGCGGCGGCGTCCACCGGACTCGTCTCCTGGGCGCTCACCGCCCTCTCCTTCGGGTTAACCGCTCTCTGCGCGCTCACTCCGGCAGCTTACAGCCTTACACACTACTACAATCCAACCACACTTGGCTGGAGATTTGATCCGTAATCTCATATGGTGCTTCTCTGTTCTTACCATTCGCAGCCTCGCGTGCAAGCACATCACTCTAGGGAACCGAGGAAGGCGGCTGAGGACGTTGGAGGCGTTCATCGCGATCTTGACGCTGACGCAGCTGCTGTATCTGATTCTGCTCCACACCGGCTCTCTGGGTAGCAGCATGACGCTTGGCCTGAGCCGCAGGAACTGCGACGACGACGAGGAGCTGCGCTGCGACGAGATTCCTCGTGAAGAACTCTACACGAACAAGAAGCCAGCCATAGTCGCGGGTGCATGACCATCGTCCATGACAATCTGTTTCTTTTTTCTTTTTCTTTTTTTTTTGGGGGGGGGTTCACTGTGTTTGTAGTTCAGTTACTGGCTTACTGGTTGTCAGAATAGGATCTCTTTCATCTTCTAGGGCCCCTTTAATTCATAGGATTGACAAAGAATTTTTATAGTATTTAAATTTCTATGGATTTTTTAAGACATGTCCCTTTGATTCATAGGAAAGAA



gi|58031140|gb|CX728683.1|CX728683 OSJNEf11A13.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf11A13 3', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
|||||||.||||||| || |
AAGGAAATTTAGTTTAACCGG

EST sequence (targeted fragment marked with yellow):
CATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAAAAAGAAAAAAAAA



gi|29631247|gb|CB636256.1|CB636256 OSJNEa01I12.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa01I12 5', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
.||||.|||||||||. ..||
GAGGAGACTTAGTTTTGTTCG

EST sequence (targeted fragment marked with yellow):
CATGGACGCCGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCGGCCGTCTCCGACCTCCTCAACGCCGCCGCCGATGCAGCTGATGCGGAGGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACG



gi|86494926|gb|CI137559.1|CI137559 CI137559 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ

TTCCTTTGAATCAAAGGGGGC
||||||||||||||||||||
AAGGAAACTTAGTTTCCCCCA

EST sequence (targeted fragment marked with yellow):
CAGGTTGCTAGAGCACTTCACTTACCACCATTCACCCTTGGAACAAGACTGCTTTTGCTTCTATGATGTCTTCATGATGAGATTGTCAAACAGTACTTGCATCCATTAAGCATTTCATATGATGAAACTACACCATTTGGAAGAGTTTGAAGGAATGTAGTAGTAACTTTAGACCCCCTTTGATTCAAAGGAAATTCATAGGAATTTTAAAGGATTTCATTCCTATAGGAATTTTTCCTATATAGCCCTTTGAATCAAAGGAATGAATACTATGGAAATTTAGCATGAGGTGGAATCTCATGTTAAGAATCCTTTGAGTCTTTTATCTCTCCTCAAATTCCTGTGTTTTTCCTACGGCTCAATCAAACGGTCATTTCTATGTTTTTCCTGTGTTTTGTAATCCTCTGTTTTACACTTGTATTCCTGTGAGAATCCTATGTTTTTCCTATTCCTCCGTTTTTTCATTCTTGTGATTCAAAGGGAGCCTTAGCTTGAGTTGGGCACTCCACTTTCTCGACATACACTTCCTTATTTTTCGCATGCATATGCCTCCTAAATTGTTCAATGAAACTTTTTTTTTTCACAAAAAGAATTATATATCAAAGTTACTTTGAAAATATTAATCTATTTTTCAAAATATTTTAACTAATACTTAATTTATCATGTGCTAATTTAATCATGCGCTAGTGAGTAACTTTTT



gi|117232811|gb|CT854780.1|CT854780 CT854780 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TTCCTTTGAATCAAAGGGGGC
||||| ||||||||||...|
AAGGACACTTAGTTTCTTTCT

EST sequence (targeted fragment marked with yellow):
TACCTCGCCGGGTGGGCGTTCGCGGAGGGCGCCGCGGCGAGCGTCGCGGCGTACGCTCTCGTGGCCGGCCTGGTGTTCCTGTGCATTTTTGGTAAGGTGTACAAGTTCTTGGCTTGGATGGAGACGAGGCAGGTGCAGTGGAAACCAAGCGTCAGCTGCCACAGTAATGTGGTTTGATCATTAATTTCTTTTCTTTTTTCGTTTTTTGGATCGAGTTGTTTCTTTCTTTGATTCACAGGAAATTGTAAAGCATAAATGCATAATAACCCATTAATTCAGGTTTTGTGTGTATAACAAGGAAAAGAGATTTAACACTGCAAAAAAAACAAAAAAAAAAAAAAAAAAAAGAGGGAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGAAAAAAAAAAAAAAAATGGGCCTCTTTGCCCCCAGGGGGGGCCCCGGCCCCCATTTCCCCCATAGGGGGGCCAAATTCCGCCCCCACCTGGGCCCTTTTTTAAAAACCCCGGGATGGGAAAAACCTGGGGTTTCCCAAATTAAATCCCTTTGAACAAATTCCCCCTTTTCCAGGTGGGGTAAAAAAAAAAAAGCCCCCCCCCATTCCCCTTTCCCAAAATTTGCCCCACCTAATGGGGAAAGGGGACCCCCCCTTTTTCGGTCCTTTAAGCGGGGGGGGGGGGGTGGTTTCCCCAAGGGGGACCCTTACTTTTTCCGGGCGCCCAAACCCCCCCTCCTTTTGTTTTTTTTCCTTTCTTTTTTGCCCCGTTTCCCGGGTTTTCCCCGAAAAGTTAAAAAGGGGGGCTCCCTTTTGGGTTCCATTTTGGGGTTTTACCGCCCCCTCCCCCCAAAAAATTTATATGGGGGAAGGGTCCCCTTGGGGGGCCTCCCCCCTAAAAAAGGGTTTTTTCCCCCTTTTGAACTTGGGGACCCCCCCTTTTTTTAAAAGGGGGACTTTTTTTTCAAAAAGGGAGAAAACACCCACCCCCCCATTTTTCTGGTTTTTTTTTTTTTTTTTTTTAAAAGGGAAATTTTGCCCAAATTCTCCCCCCCCCCCTGTTGGTAAA



gi|33800821|gb|CF326282.1|CF326282 JMT1--05-K06.g1 AtJMT-overexpressing transgenic rice lambda phage cDNA library (JMT1) Oryza s

TTCCTTTGAATCAAAGGGGGC
|||||||.||||||| || |
AAGGAAATTTAGTTTAACCGG

EST sequence (targeted fragment marked with yellow):
GCACGAGGTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCCAAAAAAAAAA



gi|33811420|gb|CF331599.1|CF331599 NACL--07-M16.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa Japonica Group cDNA clon

TTCCTTTGAATCAAAGGGGGC
|||||| |||| |||||||||
AAGGAACCTTAATTTCCCCCG

EST sequence (targeted fragment marked with yellow):
AAGGCGGTGAGGCCCCCTTTAATTCCAAGGAAAATCATAGTAATTTTTGTGGATTTCAAAAAAAAAAAAAAAAAAAAAAA



gi|86436515|gb|CI118237.1|CI118237 CI118237 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

TTCCTTTGAATCAAAGGGGGC
||||| ||||||||||||. |
AAGGATACTTAGTTTCCCT-G

EST sequence (targeted fragment marked with yellow):
AGTTTTCTATACATAAAATTATTAAACGCACCATGACGTTCTGATTCATAGGAACGAAAATAAGTGGACCTTTGATTCATATGATTGGTAAAGGATTTCCATAGGATTCAACTTCTTATAGATTGTTTCATACGTGTCCCTTTGATTCATAGGAAAGAAAGAAAACTTTCCATAGGATTATATATTCCTATAATTCACATTTAGTAGGAAAAATAGCAAGAGGTGTGATTTTTTTTTGAATTTTTCTTTGTTTTTCCCATGACACTATCAAATGACTCGTGTGTAACTTTCATGTGTTTGTTGATTCATGTAAATTTTGAGAAGCATACAACTTCAATTCATGTGTTTTTCTTATCTTGTGAATCAAAGGGTCTATTGATCCCAGATTCCCAGTGCTATATTTCAGCTAAAATTTTTTTCTGTAACGAATAATGGAATAAGTTAAAGAGATAGGTCCAGAAACTAACATATGTTTGTAACTTTTATTTTATTTTTGTATATTTCTTTCTACGATTCACCGGTTGTGTTTTGCTTTGGCATGTAGTTTCGAAGCTAACATGAGTG



gi|86871118|gb|CI328320.1|CI328320 CI328320 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTCCTTTGAATCAAAGGGGGC
|| |||||||| ||||.|||
AAAGAAACTTAATTTCTCCCA

EST sequence (targeted fragment marked with yellow):
CGTAATTAAGCTGTGTTTCTGGCTTTGGTCTATGGCATACAAAGGAAGTGATAAAGGTCGTCATGTACTGACATGTAAAAAGCCAATTAGGCACACCGAGTGTCGCAAGACAAAGGAACCCTCTTTAATTCAAAGAAAGTGATCAGTGAGCTCTATCAACCGAGAAAAATGTTGACTTGATGAACCCTGTTTCTCGGTGGAGACGCCGGCAAGACCACCAAATCACCATCATCCATAAACGGATGATGGAGCTAGAAACCAGGGTCGTCCCAGTGGAGGACAGCTGAGCCCAGGTTCTGCTCCCTCTTGAGCTTGTCCTTGACGAACCAGTCGAAAACAAGGCCTGCGTTGAGCTCCTCAATGGGGACGCCCTTCTTGCTCCGAAATCACTCTCAAGAGATTCAACGACGATATGGTGAGGCGGCCCAGGAATCGCTCGTGTGTGCTGAGGCCGGACATCTCCACCAGCCCGGGCTCCTCCAAGCTGA



gi|33684558|gb|CF312797.1|CF312797 ABF--08-L04.b1 ABF3-overexpressing transgenic rice plasmid cDNA library (ABF) Oryza sativa Ja

TTCCTTTGAATCAAAGGGGGC
|||||||.||||||| || |
AAGGAAATTTAGTTTAACCGG

EST sequence (targeted fragment marked with yellow):
CCTTGGACCTGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAAAAAAAAAAAA



gi|117227828|gb|CT853531.1|CT853531 CT853531 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TTCCTTTGAATCAAAGGGGGC
||||| ||||||||||||. |
AAGGATACTTAGTTTCCCT-G

EST sequence (targeted fragment marked with yellow):
GGGTGGGTTCACTGTGTTTGTAGTTCAGTTACTGGCTTACTGGTTGTCAAAATAGGATCTCTTTCATCTTGTAGGGCCCCTTTAATTCATAGGATTGACAAAGAATTTTCATAGGATTTAAATTCCTATGGATTTTTTACTACATGTCCCTTTGATTCATAGGAAAGAAATGAAACTTTCCATACAATTGTATTCTTATGCTTCACATTTCATAGGAAAAATAGCAAGAGGTGTGACCACTTTGTAAACTTTCCTTTGTTTTTCCCATAGCACTATCAAAGGACTTCTATTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAGGGCCACTTGGCCCTCAGGGGGGGGCCGGGACCCCATTTCCCCCTAAAGGGAGTCGAATTACCCCCGC



gi|117229737|gb|CT846652.1|CT846652 CT846652 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TTCCTTTGAATCAAAGGGGGC
.||||.||||||||| ||.|
GAGGAGACTTAGTTTACCTCT

EST sequence (targeted fragment marked with yellow):
GTGAAATTTTGGCGGAATGGTATTTCGGTAAATCGCGTTCCCGGTGTTTTCTCTGTTCGTTACTCCCGAGTCCCGACTCGCATTCCTCTGTTCGCCGCCGCCATCTCCCTCCTCGTATTGTTCACGCGAGGACGCCGCCGCGCTGCTCCTCCACCAGAGCGGTGAAAAGCCGCCGTTGTCCCCCTCCACTGTTGTCCACCTTAGGCATCAAGGTCCCGGCGCCGACGAACTGTGCGGCACCTGGCGCTTTGCTGCCCCTCGCCGGCCTCTTCGCTTCCCCCGCCCCCGCCGGACACCTCGCTGCCCCAGGCCAAGATTCTCGGTGATCTCCCCGCCGGCCGCCTGCCCTCCTTGTGCATGGAGTCACCGACCCTCGTCTGATTTGGATTCGGATTCGTCGGCACCTCTCCATTTGATTCAGAGGAGTGGAGGCGACAGTAGAAGTTTCCATACTGGAATTCGTCAGTGGTTTTGATATATCTGTCATCTGTGATCTTCCTATGCTCGAGGACCATGGAGAACTTTAGCTTTTCAATGGCATTATTGGTGAGCCATGCAGCTAGAGGGTTTGTGATGGCTGTTTGCTTTGATTCAGTGATGCATTAGAAATTGAAGTTGTCCATGCACTGACTGAAGAACATCAATTCAGATACTTGAAGCTACTGAACTCAATAATGCCTCTTGCTTTGTTTCATTGTGGATAATTGTTCTCCTATTAGAACAGTAGAGTTTGAGATATTATATCATTTATATGCAATGCAATGTGTTTCATGTCATCTCAAGTTCCCATCTGCAAATTTTCTAAAATCTTGGGAGCAGTTGACATATAGCTGAAATTTTGAGTCTTGTATGACCAACTGGAAATTTCGGATCTTGCAACGTATTTTACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



gi|44677303|gb|CR290737.1|CR290737 CR290737 Oryza sativa library (Han B) Oryza sativa cDNA clone p629h02p5, mRNA sequence

TTCCTTTGAATCAAAGGGGGC
|.||||||||| |||||||||
AGGGAAACTTACTTTCCCCCG

EST sequence (targeted fragment marked with yellow):
TTGTGTTGGTACCCGGGATCGCTTGCGGTGACTGTAATTCTCCACCGGCGCCNTTGTTTGCNTTTTGTAGNAAGAGGTGATTGTTTTTCCNANGAACCATTTCTCCGTGCTGTTACTTTGTGACACCAAGGGGCGGNNTGCNGCTCTTGGGNNTCGATGNTTCCNGNGAATTAGCCAANNTCTTTGCCCCCTTTGTTTTGTTCGCGNGTCTGTGCCCCCCTTNTTTGGNCTTTNTTTAACTCCCTCCTGGNNAGCCNNATCATGCCACCNGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGTATTTTTATTTTTCTAATTAGGAAANTTTTTTTCCTTAACNNAAAGNNCCCCTTTTG



gi|86851249|gb|CI312650.1|CI312650 CI312650 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTCCTTTGAATCAAAGGGGGC
|| |||||||| ||||.|||
AAAGAAACTTAATTTCTCCCA

EST sequence (targeted fragment marked with yellow):
CGTAATTAAGCTGTGTTTCTGGCTTTGGTCTCTGGCATACAAAGGAAGTGATACAGGTCGTCATGTACTGACATGTAAAAAGCCCAATTAGGCACAACGAGTGTCGCAAGACAAAGGAACCCTCTTTAATTCAAAGAAAGCGATCAGTGAGCTCTATCAACCGAGAAAAATGTTGACTTGATGAACCCTGTTTCTCGGTGGAGACGCCGGCAAGACCACCAAATCACCATCATCCATAAACGGATGATGGAGCTAGAAACCAGGGTCGTCCCACTGCAGGACAGCTGAGCCCACGTTCTGCTCCCTCTTGAGCTTGTCCTTGACGAACCAGTCGCAAACAAGGCCTGCGTTGAGCTCCTCAATGGGGACGCCTTCTTGCTCCGAAATCACTCTCAAGAGATTCAACGACGATATGGTGAGGCGGCAGAGGAATCGCTCGTGTGTGCTGAGGCCGGACATCTCCACCAGCCCGGCCTCCTCCAAGCTGAGAAATGTTCTCTGCTCTTGCTCCCCATCACCACCACCGACATTGCTCCGCTCTTCCTCCTACTGCTGTTGCTGCTGCTCCTCTTCTTGGCATCTACTCCTGACCACCAACCGAGACGCGGCGCTGGCCCTACTGAGCTCCCACCCGCTCCCGCTGCAAGGAGGCAGGGNGACGC



gi|86872568|gb|CI325192.1|CI325192 CI325192 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTCCTTTGAATCAAAGGGGGC
|| |||||||| ||||.|..|
AATGAAACTTACTTTCTCTTG

EST sequence (targeted fragment marked with yellow):
AACAGTTCATTAACATTTAATATAGTCCTCAGATTTTTTTTTTTTTTTCTTTTTTATGTTACACCAAAATGTACTCCTGTTCTACAAGGGAATTGTCTCGCAAGCATTTGTGGTCAGACGCCCAGTGATACAAAAAGAAAACACACAACACCAAATGTCCACATGTGGAACAAAAGAAATGGGTGTCTCTGGCAGTAATATATAGAATCAAGTTATTGTTTTTTTATTAGCTCGGTATTTTTATTCCCATAAGTTCTCTTTCATTCAAAGTAAATTAATCGCTCATTTTTTTCCCTTTTCTCCCATTTCTTTTTCTTCTTAACAGCAAATAACTGACGGGACGGGAATATGGGATGCCTTTCTTGGGCAGGGTAAATTAAATGGGCTAGCAGATGTTTGTCTTTTCCACATTCTGTATTTCATTTTCACCGCCTCGAG



gi|29622030|gb|CB627041.1|CB627041 OSIIEb01L10.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb01L10 5', mRNA sequence

TTCCTTTGAATCAAAGGGGGC
.||||.|||||||||. ..||
GAGGAGACTTAGTTTTGTTCG

EST sequence (targeted fragment marked with yellow):
GAAAAAGTCCATTTACAAGACTGAACTATCATCAAAATCTGAAATTCAACTCGGAACTTTGAAATGTGACACTATTCTTTACCCTTTCAAATAGATCTGGATAAGTTTTATAGTTTTTTAAATATGAACTGATGTTCCATTGTTTATTTGTTGCATCCAGTCCAAACTTGCACAATGCCAGGGCACTGGAATGTCCATTCATAATTGAGCATATTTTCATTTTGCATTCAATATTTCCAGACGACAATATATCTCTACCTCCTTCCCTCGCTTCTGCTCTCTGGGTTCCTATGGTATATTGCTCACCTTTTTGTCATGACATTATGTTGCTTTAATACAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGGTATATGTTTTTATATGAAGATTTCCACAGCCATCTCTCTGCTCATCGTTTGGAAATTTTGGTTTCTAATGGATGAATTTCCAGATAGGAATTGAGATACTTAATGCTCTATGCCTATATATATATAAGTTTAGATATATTCGCTTGACATATGTTACACACCTTGTGTGAATATTAACTGGTTAACATTTGTATTATTAAATATGTTTTTTTTCTATTCTTCCTAGCTAATTGTGCTTTGGGCTAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCCATTCAGAAATGTGCAAAAAAAATGGTTTGTTGAGTTAAATGCCATTCAGTTGA



gi|88339174|gb|CI633745.1|CI633745 CI633745 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group

TTCCTTTGAATCAAAGGGGGC
.||||.||||||||| ||.|
GAGGAGACTTAGTTTACCTCT

EST sequence (targeted fragment marked with yellow):
GGTTCGTTACTCCCGAGTCCCGACCCGCATTCCTCTGTTCGCCGCCGCCATCTCCCTCCTCGTATTGTTCACGCGAGGACGCCGCGGCGCTGCTCCTCCACCAGAGCGGTGAAAAGCCGCCGTTGTCCCCCTCCACTGTTGTCCACCTTAGGCATCAAAGTCCCGGCGCCGACGAACTGTGCGGCACCTGGCGCTTTGCTGCCCCTCGCCGGCCTCTTCGCTTCCCCCGCCCCCGCCGGACACCTCGCTGCCCCAGGCCAAGATTCTCGGTGATCTCCCCGCCGGCCGCCTGCCCTCCTTGTGCATGGAGTCACCGACCCTCGTCTGATTTGGATTCGGATTCGTCGGCACCTCTCCATTTGATTCAGAGGAGTGGAGGCGACAGTACAAGTTTC



gi|86889919|gb|CI319908.1|CI319908 CI319908 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TTCCTTTGAATCAAAGGGGGC
|||||| ||||||||.| ||
AAGGAACCTTAGTTTTCGACG

EST sequence (targeted fragment marked with yellow):
ACCAAAAAGGCAGTTTCATATCTATGGGATGGAACAACAGACAGCTACAGATATTCTCAAGCAAAGAACTAAAGACAATTCTCAAGGTGAAGTCAAAATATACATGGTACAACAACAAAAAAAAAATGGGCTGCTTATTTTTCTTACCACTCTGCTGCTTTCCTCAGCAACAACCCAGGGCAGGCCAAACTAAGCAGCTTTTGATTCCAAGGAAGACTTATCCTAACTAAATTTGCAAGGCCACGAACTTATTGAGATTGTTGACCAGAGTTCTCCGAGGTGGTACTCTCAGGTTCCTGAGACACTTTGATGGTCGAACCATTCGCAGAGTTCTCCC