| mature miRNA: TTCCTTTGATTCAAAGGGCTA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88852328|gb|CI374096.1|CI374096 CI374096 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): ACTTTGTCAAGAGCTACATTACTAACCATTGTAATTAAGAAGTACAAGATCGCTGATTGCACATCAACGCATTATGTTATTATCAGACACATGAGATGTGCTATCACAAGTTTATGCCGCCTAACCTTCAATCCTTCAGTTCTTTCCTTCAAGCTGGAAGGCAGGCCTGCCATCACCATCCGCCACAACAGGCTGCTACACAATGAGGGCCCCTTTGAATCAAAGGATTTATATAGGAATTTCATTGGATTCAAATCCTATAGGAAAATTTCCTATTTGGCCCTTTGATTCACAGGATTGAAACTTTTCAAATCCTATGAAATTCCTATAGAATGACACATTGTAAGTGGATTTGGGAGGAAACTTAGCAAGAGGTCCAACCTCTTGGAAAAATTCCTTTGAGTCTATATTCTCATCGATCCTG | |||||||||
gi|88223419|gb|CI223268.1|CI223268 CI223268 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): AAACTAGCAAGAGCAGCCTCATAAACTTGCTCCTCGAATCAAAGGAACAGATACACATAACAGATCATGTCACACCACCTTGATAAACAAGCAGAAGACCTTGTTTCGTGCAAATGGGCAAAAAAAAGCCAGGCTGCTTCGATGCTCCTTTGGAGGGTGTTGGCTTGGATGCAGCATGATCATGCACGAGCTAATCCTACAATCCTACAATTTGCAGTTGATTTGGTCTTGTCACTGCTGAAAGACGATATTGAGGAGATTACCGAGCATTCAGGACGGTCTCTATTCTTTAGACAAAGTAATCTTGTCGCACCACGGTGATGAAGTCAGCAGAGAGTGAATCATCCTCTTTTTGTTTCACCGTCTCACCGTTCCCTTGGATATGCCAGTATATTGGGGGAAGAGGAGTATAAAGGTCTGGAGAAATAGTTTGATCATATTCTCTTGTAGAATGCAATACAACGGTACCAGAAAGCACAGTAAGAAATCCACAGATCTCAGAAGCAATACTGCTTATACTCTGTCCAGACCAATCCTTGAACATTATGGCACTTGCTAAAATAGTGAGGGATGCTAACATCGCATAATAGATGGGGGACAC | |||||||||
gi|29662485|gb|CB658760.1|CB658760 OSJNEc15A18.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc15A18 3', mRNA sequence TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): AGGGCCAGCTTGACGACGTGCTTGGAGAGGCAACTGAGGCGATGCAGCTGAACCAACTTGTTCGGCTTGTGGATCCAACGACCGGGAAGGAGGACTGATGCTGATCTGTGGCAGTGGCAGTGACGAGGAGAATGGAACCCGGATGCATATTCCCCTTGAAGCTGAAGCTGAAGCTACCCCAGGTGATGGAGGAGAGTGGCTGTGCACCAGCTGCCACAAAAATAAATTCCCCCACAAGTTTGCCAAATCAAGAGTGCTGAAACGTAGCTGATCTCTCTGCCTCTTCTGTTTTACGGTAGCGATGATTGTCATCTGTGCTGTGCCGGTGTAAAAAGTTTTTCTGCTTCATGGTTTTTACGTGGTTTGCCAGCCAGTGATCTCAAACTTTTCATATATGATAGCACAGTATAGAGTTGGTTTTCAGTAAATAATTTTACACTTGCAACCGCCAATAGTACAGTGCAGTACAGTTCACCACGTGATTTTACATACATGTATTATACTACTACTACTACTACTCGGCACGGAAGCAAGCTATAGCAACGAAGCATTTGCAGCTCTTGAGAAAAGCATTCATGTAAAGTTGTTGGCCATTTGAATCAATGGAGCATAACTGGGACAGAAACTTTGTGGCAACTTACCGCACGGATCTGAAATCTCGTGTAGGTTGCTGCTGCACTTGACT | |||||||||
gi|88250369|gb|CI348599.1|CI348599 CI348599 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): AAATACCAAGACTCTCAATGGTATGCCAATGTGAACTGTAACAGCAGAGTTTCACACTCTGCAGCGCTAATATGGTGAGCAACCGCTAGTAGGCTACATGAATGGTTTCAACCTCACCGAAAGAGGGTAGATTTAGCTTCTTACATTCATTTAGAGTGTACAATATACATGGATCAACAGAAAAACCTCAAAAATTAAAAGCCAAAAAAACATCCGTCAAACTAGCAAGAGCAGGCTCATAAACTTGCTCCTCGAATCAAAGGAACAGATACATATAACAGATCATGTCACAGCACCTTGATAAACAAGCCAGAAGACCTTGTTTCGTGCCAATGGGCAAAAAAAAGCCAGGCTGCTTCGATGCTCCTTTGGAGGGTGTTGGCTTGGATGCAGCATGATCATGCACGAGCTAATCCTACAATCCTACAATTTGAAC | |||||||||
gi|29664588|gb|CB660863.1|CB660863 OSJNEd03A06.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd03A06 3', mRNA sequence TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): TCTAGGGTAGAGTTTGAATTACCCCTAAACTATCATCCCGTTCGATTTCGTCTGAAATTATGATACGAGATATCCATTTTCTCCCTTTATTTTTACCCCCCCCAACTTATCAGGCAGGACAAGAAACCTCCCTACCCAGTCAAGAGTAATTATTTTTCCTGGGTGGCGCATAATAAAAAAAAGTTAAAAAATATGTTGGATGACACGCAGATTATTCTCGAGGATTTTTTCTTCTTCGGACAACCGCAATGTGTGAAAAAAGAGAACGTTGTTTTAATTGTACTTGTAAAGGGAGCGATATACTCCGTATAAAGTGACATTAGCTTAGGATGCGCCCTATGCTTAGGCCCCCTTTGATTCAAAGGAAATTTATAGGAATTTTAGAGGATTTCTTTCTTATAGGAATTTTTCCTATATAGCCCTCTGAATCAAAGGAAGGGATTTTATGTAATCTATTGAAATTCCTATGGATTGCCTAATGCCATGCAAGTTTTGGAGGAATTTTACCATGAGGTAAAACATCTGGAAAAAAAG | |||||||||
gi|88257966|gb|CI360552.1|CI360552 CI360552 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): GGTTTCAACCTCACCGAAAGAGGGTAGATCTAGCTTCTTACATTCATTTAGACTGTACAATATACATGCATCAACAGACAAACCTCAAAAACTAAAAGCCAAAAAAACATCCGTCAACTAGCAAGAGCAGCCTCATAAACTTGCTCCTCGAATCAAAGGAACAGATACACATAACAGATCATGTCACACCACCTTGATAAACAAGCAGAAGACCTTGTTTCGTGCAAATGGGCAAAAAAAAGCCAGGCTGCTTCGATGCTCCTTTGGAGGGTGTTGGCTTGGATGCAGCATGATCATGCACGAGCTAATCCTACAATCCTACAATTTGCAGTTGATTTGGTCTTGTCACTGCTGAAAGACGATATTGAGGAGATTACGAGCCATTCAGGACGGTCTCTATTCTTTAGACAAAGTAATCTTGTCGCACCAGGGTGATGAAGTCAGGA | |||||||||
gi|86494926|gb|CI137559.1|CI137559 CI137559 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): CAGGTTGCTAGAGCACTTCACTTACCACCATTCACCCTTGGAACAAGACTGCTTTTGCTTCTATGATGTCTTCATGATGAGATTGTCAAACAGTACTTGCATCCATTAAGCATTTCATATGATGAAACTACACCATTTGGAAGAGTTTGAAGGAATGTAGTAGTAACTTTAGACCCCCTTTGATTCAAAGGAAATTCATAGGAATTTTAAAGGATTTCATTCCTATAGGAATTTTTCCTATATAGCCCTTTGAATCAAAGGAATGAATACTATGGAAATTTAGCATGAGGTGGAATCTCATGTTAAGAATCCTTTGAGTCTTTTATCTCTCCTCAAATTCCTGTGTTTTTCCTACGGCTCAATCAAACGGTCATTTCTATGTTTTTCCTGTGTTTTGTAATCCTCTGTTTTACACTTGTATTCCTGTGAGAATCCTATGTTTTTCCTATTCCTCCGTTTTTTCATTCTTGTGATTCAAAGGGAGCCTTAGCTTGAGTTGGGCACTCCACTTTCTCGACATACACTTCCTTATTTTTCGCATGCATATGCCTCCTAAATTGTTCAATGAAACTTTTTTTTTTCACAAAAAGAATTATATATCAAAGTTACTTTGAAAATATTAATCTATTTTTCAAAATATTTTAACTAATACTTAATTTATCATGTGCTAATTTAATCATGCGCTAGTGAGTAACTTTTT | |||||||||
gi|88262656|gb|CI366430.1|CI366430 CI366430 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): CAAGTTTCAGCAATATTTGCACGGGAACAGTAATTATTACATGTCAGGAGTTGAATAGGACAGCAGCAGAAAAGCTTAAAGAGCTAATGTGCACTGTAAGTAAATACCAAGACTCTCAATGCTATGCCAATGTGAACTGTAACAGCAGAGTTTCACACTCTGCAGCGCTAATATGGTGAGCAACCGCTAGTAGGCTACATGAATGGTTTCAACCTCACCGAAAGAGGGTAGATCTAGCTTCTTACATTCATTTAGACTGTACAATATACATGCATCAACAGACAAACCTCAAAAACTAAAAGCCAAAACAACATCCGTCAAACTAGCAAGAGCAGCCTCATAAACTTGCTCCTCGAATCAAAGGAATAGATCCCATAACAGATCATGTCACACCACCTTGATAAACAAGCAGAAGACCTTGTCTCGTGCAAATGGGCAAAAAAAACCCAGCCTGCTTCGATGCCTCCTTTGGAGGGTGTGGGCTCGGATCACATGAT | |||||||||
gi|58598541|gb|CK009069.1|CK009069 27851rsicef_3930.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): GCACGAGGGTCGGCATCCGGCGAGCTTCGCCACCGTCGCCGGCCGCCGTCGCGCCCCTTCTCTCCGATCTGATCCGTGGAACCGATTCCCCGCCTCCTCCTCTCGCTTCCAGTGCCTGCCGCCCACTCCGATTCGCCGCCGTTCGCCGGAGCGCGCCGAGCGCCGTCGGCCGTCCGATGAGCCGCCCGGCCTCCTCTCCCTTCCCTGTCCGACGTGGCGTCCACGTGGACGCCACCTCAGCCGCTGACCCCACCAGACCAAGTCAACCCCTGCCCAGTCAGCCACCCCCCCCCCCCTCTCTCTCCCCGCTCGTGGGCCTGGCCCATCGACCAGCTCCCCTCCTCGGCCCATTGAAACAAAGGAAGTCCATTTTTACTCCCTCCGCCAAACACAATGACCAAAAGTCTATATATGCTCCCTCCCAATTCACCTCTCTCTCTCACCATATGTTGGCCCCACATGTCAATGAGTGATAAAAGGGTATTCTTGAGAATATTCATTTCCATAAATGCAATAAATCATATCTCCT | |||||||||
gi|66927536|gb|CX114384.1|CX114384 EI087K15 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): GGTTCCCATGCGTGAGAGGAAGGAATGCCATTGCATGCTTTTTCTTACCCCCGACAATGACTTTGCTGGACAAGACCAGGCTATAACCTTGGAGGAGATCAAAGACGCAACATCAAAGATATAACCTCAGTGCACCTTTTCTTCCATTATTCTGCTTGACACCAGAGTTTGTATATGTAGTCTCTGTAAGATGACATTCTACCGATGAAATCGGTCATGATAAGATGTGTAGTAAACAACAATTTGTCGTTCCTTAGCTTTCATGTTCTTGCTTTTGAACATGGGAAAACACGCTCCCACTAATACAACAGCCTATTAACTACGCACTTGATACAAAGCATCATGTTTGTTCATCCTTTGAATCAAAGGTATGATATTTTCCGATTGAAAAA | |||||||||
gi|109712898|gb|CI105506.1|CI105506 CI105506 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativ TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTCAACCTCACCGAAAGAGGGTAGATCTAGCTTCTTACATTCATTTAGACTGTACAATATACATGCATCAACAGACAAACCTCAAAAACTAAAAGCCAAAAAAACATCCGTCAAACTAGCAAGAGCAGCCTCATAAACTTGCTCCTCGAATCAAAGGAACAGATACACATAACAGATCATGTCACACCACCTTGATAAACAAGCAGAAGACCTTGTTTCGTGCAAATGGGCAAAAAAAAGCCAGGCTGCTTCGATGCTCCTTTGGAGGGTGTTGGCTTGGATGCAGCATGATCATGCACGAGCTAATCCTACAATCCTACAATTTGCAGTTGATTTGGTCTTGTCACTGCTGAAAGACGATATTGAGGAGATTACCGAGCATTCAGGACGGTCTCTATTCTTTAGACAAAGTAATCTTGTCGCACCACGGTGATGAAGTCAGCAGAGAGTGAATCATCCTCTTTTTGTTTCACCGTCTCACCGTTCCCTTGGATATGCCAGTATATTGGGGGAAGAGGAGTATAAAGGTCTGGAGAAATAG | |||||||||
gi|88695871|gb|CI737448.1|CI737448 CI737448 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): ATGCCTTAGAAGTAGATTTGAATGAGAATGAATGAAATGAGTAAACGTTACTAGGAAGGTGAACTCGCTATCAAACTACAGCCTGCGCTAGTGGCTCAATCCGTTGCTTGTTGGGTTGAACATATTCTTTTTCTTTGACGGATAGCTTCTCGGCTCTTGCCTGGCCTGGAGTTGAAGAAGGAACTGGTAGCACTTGAATCAGAGGAAGATCGGAATAGCAGACGAGTTGCAGCTTTTAGTATTGTTCACAGCTTGGATGCCTTTATGCCAATTTTCCCGTGTTTATGGAAAGCCCGTCTTTTTGGCAGAATATAGCCCCACTAGGTTCTTTTGTTCTCGAATAAGCA | |||||||||
gi|313080017|gb|HO213337.1|HO213337 FS406 FR13A Submergence VS control suppression subtractive hybridization reverse libraries O TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): ACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGGATTTTGGAACTGCCCTTGTGTTCCCATGCGTGAGAGGAAGGAATGCCATTGCATGCTTTTTCTTACCCCCGACAATGACTTTGCTGGACAAGACCAGGCTATAACCTTGGAGGAGATCAAAGACGCAACATCAAAGATATAACCTCAGTGCACCTTTTCTTCCATTATTCTGCTTGACACCAGAGTTTGTATATGTAGTCTCTGTAAGATGACATTCTACCGATGAAATCGGTCATGATAAGATGTGTAGTAAACAACAATTTGTCGTTCCTTAGCTTTCATGTTCTTGCTTTTGAACATGGGAAAACACGCTCCCACTAATACAACAGCCTATTAACTACGCACTTGATACAAAGCATCATGTTTGTTCATCCTTTGAATCAAAGGTATGATA | |||||||||
gi|109712672|gb|CI105280.1|CI105280 CI105280 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativ TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAAAGCTTAAAGAGCTAATGTGCACTGTAAGTAAATACCAAGACTCTCAATGCTATGCCAATGTGAACTGTAACAGCAGAGTTTCACACTCTGCAGCGCTAATATGGTGAGCAACCGCTAGTAGGCTACATGAATGGTTTCAACCTCACCGAAAGAGGGTAGATCTAGCTTCTTACATTCATTTAGACTGTACAATATACATGCATCAACAGACAAACCTCAAAAACTAAAAGCCAAAAAAACATCCGTCAAACTAGCAAGAGCAGCCTCATAAACTTGCTCCTCGAATCAAAGGAACAGATACACATTACAGATCATGTCACACCACCTTGATAAACAAGCAGAAGACCTTGTTTCGTGCAAATGGGCCAAAAAAAGCCAGGCTGCTTCGA | |||||||||
gi|218478297|gb|FG953595.1|FG953595 MA_PA64s_01406 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAGGCATATTTCTTAGTTCGTATGATGGAATCTTGTTAGCTTCTACTCCCTCCGTAGTTATATTTGGAGGCTATGAGAGTGACCGGAAATGGCCGGAGGATGCCGGAGAATGTGCCGGCGGCGGCGGCCGCGGGTTTTTGATGAAAGCCGTGGTGGGGTCAGGACGTCAGGGCAGGGGTGTACTCTCACGGTCTCACCCCTATGGACCTTTTTCCACTTAGGTCCAATAATTAATACAAATTTATGAAAAAGGATCGTGCAAATGTAGAAGTATTACAAGATCTTTTGGATAGAAGAAATTCTTAGCCCCTTTGATTGAAAGGAAATTCATATGAATTTTAAAGGATTTCATTCTTATAGGAACTTTTCGTATATAGCTTTTGAATCAAAGGAATAAATCCTATAAAATTCATATGGAATGCCTCTTCCCATAAATTTTTGGAGGAAATTTACCATAAGGTACAACATCATGGAAAGAATCCTTTGACTCTTTATCTCTCCCTAAATTCATGTG | |||||||||
gi|88841805|gb|CI081061.1|CI081061 CI081061 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa TTCCTTTGATTCAAAGGGCTA EST sequence (targeted fragment marked with yellow): ACAAATGAAATAAATACCATAAAGTTGAAAATGAATTTAAAACATTCTTCTACATAAAAAGCCTTTTTAGCACACTTTGGAAGCTAGGGAATCATAAGCATTTCATCCAATAATTTCACCCCTTGAAAGAGGACGACTTCACCTCCACGAGTCTCTTCACTCCAAAACCGCTGCCGCGGAAGCTGGTTTATGTTTCTACGTGGTGACTATTACGCCGTCACTGCAAACGGGGGCATTACATATGCAGCCGAACGACCTGAGTGATCGGCCGATTGGCGATTGGGCCGTCCACGCGCACACGGATCCTGGCCAATGTTCCTTCCATGCGCCATATCATAGCCNATGCCCATTTAGGCCCTGTGAATCAAAGGATTTATGCCCTATGAAATTCCTACATAAATCGTTTGATTCAAAGGATTGAAACTTTTCAAATCCTATGAAATTTCTATGGAATGGCACATTGCATGTGGATTTTGGAGGAAATTTAGCAAGAGCTCCAATCTCTTGAAAAATTTCCTTTGATTCTATCTCTCTCATCCGATTCCTG | |||||||||