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mature miRNA: TTCTCTCAAGTTGCCAAACAAG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|44679481|gb|CR292915.1|CR292915 CR292915 Oryza sativa library (Han B) Oryza sativa cDNA clone y841c07p3, mRNA sequence

TTCTCTCAAGTTGCCAAACAAG
||||| |||||| |||||||.
AAGAGTGTTCAAGAGTTTGTTT

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTTGGAACAATCTTAATCACAAAAGAAATAGTAGAATGCATCAAATCCTCACTAATAAAAAAAAAGACATTCGCTATAGCAAAGGCCGGGCAAGCCTCACCTAGCTAGTGTTTGTTTGAGAACTTGTGAGAAGATGACAGGAAAAACCAATCCACCTCTACTCTTGCTCCTCTCCTCCTTTTTGGTCCGTTTTCTCCAATTTGCTTCTAGATTAGGACTATGGTTCTTGAAGATCCATGGAGTAGATCATGTGGTTGAGAGGAGGGAGATAGCATGTGTTCAGGATGTTGAGGTACCGATCTTATTGACTCTAGAATCGACATTGGTGGCATCTTCCTCGCAGACTCCAACAACTCTGGCGGCGCCGCCGCCAACTCGTAAAACCCAGGATCAGATATCTCATCATGATCCTCAATTGGATGTTTCGCATACGGCTGATTTGGGGGATAGCCACTGGAGTCCTAAAATGGATTTTCC