| mature miRNA: TTGAGCCGTGCCAATATCACA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|66930628|gb|CX117476.1|CX117476 EI109K19 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): GTGACGTGAACCTGTGATCGGACCCTACCGTGGTGTATTGAAGCAACGGATGGTGGAGAGAAGATGGAGACGATACGTAATTGTGGTTTCACGTAGCGACACGAGTAGACGAGATAGCGATGTATGATGTGTAGTGACGTGTAGTGGGTATAGATAGGCGAGAGATGGCAGAACAGAAATGAACGACACAGCAGAGATACAGAAAGACGCAGTCGACTCAGGCGAAATCGCACACTACACTACCTTGTCAACGCTAGTACACATTAATGAGACTATACAGACATATCTACATCGACTATCGATATCTAATTATGATTACACGAAGTATATAGACACAACAAGCACACGATAGGAGTGAAGTGACACTAGACAGACATCGTGATGCACTTAATCTATACAATAATATATAGTAGTAGATTTATGTGCGCACGTCGAAGGTGAGAGCGGAGAAGGTAAGTGGAGTGTATGGATTATAAGCTTGTTTGTGAATTATACGATGACATAAACACCAATCCATACAGACAACCAACACAGAACTACGTGGTGTGTGTATACCATCGACTACAATGAGCCTGAGGTCACATCGCATACAGCAAACAGACAAATCACTCACCAGGCGAACACTAGACACACAAGTCTATATGCTGCTACATGCAACATGCATCTCCTCGAGTCGATTGCATCAATCACTGCACTCACACATCAACATCCACTCCTCGCCACATGAGTGTGTGTTGTATGTTGACAGGGTGTCAGTAAGCACTCTCTGAATCTCTAGCTGATGCTGTGCCTGCTCATCGCACTGATCATATCTCTTGTCCAGTCGACGGAGTCGGCGTTGTGTGACTGCGCGCGATCAGGCCATACTCACACTGAGGTTGTGTGCTGTTCCTCGTGCAGAAGACGTCCGACCAGCTACTGGATGTGACGTGCGACTACGCAAGCTGTACTAGTAGTATACAGTGTGCGTCGACAGTACGATCACAATCGAGCAGGTCCATTCGCGATACTACGTATGCGAGCGCGCTGTAGATACAATGTCTCTCGCGTCTCTGCACCATCCGTCCATCTACTTATGTCCCGACCTGCGCGGCTCAGCATAGCGTGTCTGTGCGCAGGGTGGGATGGTGGCATGGCTCAGTCATTCG | |||||||||
gi|117246287|gb|CT862661.1|CT862661 CT862661 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): TTTTTTTGTTTTTGAGAATCCGCGGGGCGGCCGCTCTAACTGTGGATCCCTGGGCTGCAGATTCGGTACTCTTTAAAGGGGTCGAGAGACGGAATCTCCGCCTCCCCTATATAAGATAGGAGTACTCTACATGCTGCTATGATCAATATTGCCCTCATGTCCTCCTCGCTCTTGCCATCTCCCCAACCCCACCACCCTGCCGCTGCCGGAGCCGGACAGCAGCAAGTCGCCGGAGCCCACCTCCGTGCTCTACAACCGCAGCAGCCCGAGCACCTCCCTCGGCTCCTGCTCCTCCAAACCACCGGAGGACCCTCCTCCTCCCCCCATCGCCGCCGACGACGACTGCGACTGGGACGCCGTCGTCGACATGCACATGCACATGCTCGCCCCCGCCCCCGCCCCCGACTCCTCCTTCTTCCGCTGGATCATGGATACCGGCTATGCCGACGCCGACACCTTTCCCGACCACCCCTCCTTCGACTCCGACCTGCTCCAACTCCCCATGCCCATGCCCTCTGACCATCCTCCTCAGCCGCTCGTCGACGACCTCCCCGACGCCGCACGCCTCCTCGACGCCGGGGACTCCACTTCCGCTAGGGAGATATTGGCGCGGCTCAATCATCGCCTCCCCTCTCTTCCGTCGCCGCCGGGCCATGCCCACCCTCCGCTCCTCCGCGCCGCCGCCCTCCTCCGGGACGCGCTCCTCCCGCCCACCGCCCTCCCCCGTCTCCTCTACTCCCCTCGACGTCCCGCTTCAGCTCGCCGCGCACAAGGCCCTGTCGGACGCCTCCCCGAACGTGCAGTTCCCCACCTCACATCCACCCCAGGCTTTCCTCGAAGCGGTTCGGCTCCCCCGCGCCGCCTCCACCTCCTTGAATTTAAAGTTCGCTTCGGGGGCCCATTGGGCCCCCTCTCATGGTCAGAACTTCGGCAACCACTGGGGCCCTCGCTTGTTGGCCCGCCCCCCAAAACCCCCAAGGGGACCACAATTGGTGTCCCCCCGGGTTCCTCCCCCCCCCTTCGAACTTCCTCCTCCCAAAAAAAAGCCCCCCCCGCTGCTTTTTCCCCCCAAAATTTCGTTATCCCCCTTTATAATTTTATACCCCCCCCCTTTGTTTTTCTTTCCCCCCCTTCTAACAGACCGGTGTCCCCCCAACCTTTTTGTGGTAAATCTTCTCTTTGCCCGCCCCGCCTTCCGAAAGATAAAAAGATCGTGTTGGGGGTGCGTCTCTACTATATTTTTTTTTCATTATCTATACCCTCTCTATAGGTACTTTTCTTTCCTCCGTGGGGTGTGTTGCTCC | |||||||||
gi|88432851|gb|CI690701.1|CI690701 CI690701 Oryza sativa (japonica cultivar-group) 3 weeks after flowering ear Oryza sativa Japo TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): GATTCAGATCACTCATTCACACTAACCCTAGCTAGCAACCTGCAACCTGCATAGTATATTGCATTGCGCCCAAGCTTTCTTCTTCTTCTTCTTCTTCCCTCGCCGACAACCTCCTCCGTTTGCCCGGCCATTGTTCTTCAGAGCTTGGTCGCGATAGAAAGAAATGAAATTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCATTTTTATGCAATCATGCGTACAGATCACTCCCAAAGTCTCAATTTACCATCACTAATCTGC | |||||||||
gi|117235958|gb|CT849047.1|CT849047 CT849047 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): AACAACATGAATGAACATTTTCAGCCATCTCTTGATCAGTTTACACTTGCGGAGCTGTTGGGCAAACCATTTATATGAGAGGATATGATCTGGTTGCATCCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATACGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAGTAGTGTGAGGATATTGGATTCTTCCACAAGGTATGAGAATTGTCATGTTGTGTATTTGTGCTCCTTTATGCGTGTTATTTCACATGCCTGCCTATTAGATTTAAGTTTCTTTATGTTGTTTCATGCAAAGCTTTCAGAAACTATTTTGTCTGACGGTTCAAGCTTTACAGATTTAAGTTTTGCTGCTGGTACTAGCTGGTCAAATGGCACTAAAAGGTTTAAAACCATGTGAATATTTATGAATATCAATGTAGTAGTAACATAAATCTTACTCTTATCAAAGAAAAATCCCTCATCAGCAGCACACTAATCCTGACGTGTACGCAACCAAACAAGCCCTGCTTCTGTTCTTCCTCTTCTTCTTTTTCACACTGTTTTTCAGTTGAGTAGTTATCTTTCATGCATGCTTTGGTGTAGATTGAGATGTCCAACTTGATGTGATGATCTGGAAAAGAAGAAGCAATCTGAAGGTTGTCCAACTTAAGGTTTGATGCCTTAGATCAAATGGCCCAGCATCTGTACCTAACCCAGATGATATGACCTAAAACCTGCACGAGCTGTCTGAATGTCTGATCGAGAAGCA | |||||||||
gi|44676460|gb|CR289894.1|CR289894 CR289894 Oryza sativa library (Han B) Oryza sativa cDNA clone y715c01p5, mRNA sequence TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): TGACGGGACCCGCTCGACGGTATTTGACTGCGCGCACGCCGCTGGCACCGCCGGCCGCCGCACCGCCCGACCGGGGTGGCACTCCGCACTGTGTGGACGGCAACCTCGAGGCCGCGTTCGCGGTGACTTCGGGAACTCGTTGCCACCTTCCCGTCCGTCGCACTGGCCACGACGTTCCCGGGCGTCGTCTTGCAGGCCTGCTCGTGGCACGTTCCAAGTCCCAACGCCGCATTTCCAACTCACGCACACGCTCCAAAGCCGAACGTCTGCAGATTGCTGCAAGCTATATCCCCAGCTTGTGTTTCAACCCTTCGTCGCAATCGCAGCATGGTTGGTGCTCCCTGTCTGCTTTGTGACACCGAAGTGGTCGGACACTTTGGTGATTTTGGCACGGTTCATATATTATCGTTGGATTATCGATTCCTCCGTGATGCTGAAAAATCCGGATTGCTTGAAAAGAATTCGCAATATGGAAATTTGGAATCCTGGAAGGCAGGATGGGTACTTTGACGTATCAGAGCCTGTTAAACATCCGGGAGTGTATAGGGAGACTTGGATTGTCTTCGAACCGGAGTTGCGAGCTTTAAGGCTTGGGTCAATTGGTTCGATCAGGAGGTGATTTGATGCATGCAAGCTCTTGCAGAGGTTCAGGGTGGTGGTTTAACGTTGTCTCATAAAAGAGGATTAAGGAAGTTATGGGACTAAAGTTGCGTTACAGGGTGGTGATCATCCGTTGTACTTTCATCTGGGCAAGAAGCGTGGATATTACCGGAGTTCTTATGAACACTCAATCAGGGCAGTATATATGAGACCGCAGAGGGTGTTGTGAATTTAGGGTAGTGTGTATGAGAGATATTGGAAGAA | |||||||||
gi|58657192|gb|CK045872.1|CK045872 44230rsiceh_12912.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): GCACGAGGGCCTGATGACATCTACCTCGCCGTACCAGCTACGCCTGCGGCGGCGGCGGCGCAGGGGCTCCCGTTTTCACCACTACATGCCTCGGTTCCGTTCCAGCTCCAGCCTTCGCCGCCACCGACTCGCGGGGCGATGAAGACGACGGCTGCGGAGGCCGCGCAGCAGCAGTTGCTGGACGAACTGGCAGCGGCGGCAAAGGCAACCGAGGGTGGCAATTCCGTCGGCGCGCGCGAGATATTGGCGCGGCTCAATCAACAGCTCCCCCCTCTTGGGAAGCCCTTCCTCCGCTCCGCCTCCTACCTCAGGGAGGCCCTCCTCCTCGCACTCGCTGACAGCCACCATGGCGTCTCCAGCGTCACCACGCCGCTCGACGTTGCCCTCAAGCTCGCGGCCTACAAGTCGTTCTCCGACCTGTCGCCCGTGCTCCAGTTTGCAAACTTCACGGCAACTCAGGCACTTCTTGATGAAATTGGTGGCACCGCAACTTCCTGCATACATGTCATTGACTTCGATCTCGGTGTTGGCGGTCAGTGGGCTTCCTTCT | |||||||||
gi|58671994|gb|CK060680.1|CK060680 63832rsicek_9194.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): GCACGAGGCAATCACCAGTCGCCGCATCTCCAGCCACCGCTCAAACGCCACCACGCCATTCCAGATGACCTCTACCTCGCCCGTAACCAGCAGCAGTCATCCGCGGTGGCGCCAGGTCTCGCCTATTCACCACCGCTACATGGCCCGGCTCCGTTCCAGCTCCATCCTTCGCCGCCACCGATTCGCGGGGCGATGAAGTCGACGGCGGCGGAGGCGGCGCAGCAGCAGCTGCTGGACGAGTTGGCAGCGGCGGCAAAGGCAACCGAGGCTGGCAATTCCGTTGGCGCGCGAGAGATATTGGCGCGGCTCAATCAACAGCTTCCCCAACTTGGGAAGCCCTTCCTCCGCTCCGCCTCCTACCTCAAGGAGGCCCTCCTCCTCGCACTCGCCGACAGCCACCATGGCTCCTCCGGCGTCACCTCGCCGCTCGACGTTGCCCTCAAGCTTGCAGCATACAAGTCTTTCTCTGACCTGTCACCTGTGCTCCAGTTCACTAACTTTACCGCAACACAGGCGCTTCTTGATGAGATTGGTGGCATGGCAACTTCCTGCATCCATGTCATTGACTTTGATCTCGGTGTTGGTGGTCAGTGGGCTTCCTTCTTGCAGGAG | |||||||||
gi|58599944|gb|CK010472.1|CK010472 30563rsicef_9590.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): CCCCGGGCGCAGGAATTCGGCACGAGGGCGAAGCGCCACACTCCGGCCCGACAATCTCTTCCTCCTCCACAAGCAGCCCCAGCCACCGCCGCCGGCGCCCGCGCAATGCCTCCCGTTTCCAACGCTACATAGCACGGTACCCTTCCAGCTCCAGCCTTCGATGCAGCATCCGCGCAACGCGATGAAGTCAACCGCGGCGGCGGCGGCGGCGCAGCAGCAACACCTCCTGGACGAGCTTGCAGCGGCGGCGAAGGCAACCGAAGTCGGCAACTCCATAGGCGCGCGAGAGATATTGGCGCGGCTCAATCAGCAGCTTCCCCCAATTGGGAAGCCTTTCCCTCCGCTCCGCCTCCTACCTAAAGGACGCCCTCCTCCTCGCGCTCGCCGACGGNCACCACGCCGCCACCCGTCTCACGTCTCCGCTCGACGTCGCCCTGAAGCTCACCGGTTACAAATCCTTCTCCGACCTCTCCCCCGTGCTCCAGT | |||||||||
gi|88692682|gb|CI736257.1|CI736257 CI736257 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic TTGAGCCGTGCCAATATCACA EST sequence (targeted fragment marked with yellow): ATCCCTAAGTCCATTCCTTCACCACACCTCTGCTCGCCTCCTTCTCCATCTCTCTCTAAGCTGCATGCCTTCCATTGGAGACAAGGGAGAGAACCATTGCATGTCCATCGTCCATGCATCTGCATATGCATGGTGTTGTTCTTCTCGTCTACCTCCTGCTTCTACATGTGACGGAGAAGAAGGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTACCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGTACGTACGCGCACGCACGGTTGCACCATGCATCGACGACGACCACTGCCATGGCCGCCGGTA | |||||||||