| mature miRNA: TTGATTGCAACGTTTGACCAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88208548|gb|CI208397.1|CI208397 CI208397 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): ATTTATAACTTACTTTATTATCTACAGTACTTTAAGCACAACTTTTCGTTTTTTATATTTACAAAAAAAATATAACTAAGACGAGTGGTCAAACGTTGCAAGCAAAAACTCAAAATTCCTTATACTGTGGGACGGAGGGAGTAATAATCTAGTACAGTAGTAATAACACTGTTATTGTCATCTCTCCTAGCTCCGGCGAGCCTCGTCTCCACGGCGGCCGGCGGCTATCCGGTCACAGATTCCTGAGGATCTGGACGATCTGGTCGAGCTTGTCCAGGTTCTTCTTCCGATCCCGCTCGCGATCCTCCTCCCGGCTCACCATCTCGGCGACCTGCTTCTCCCGCTCCTCGCCGCGCCGCTCCAGCTCGACGAGGCGCCGCCGCCGCTGCTGCTCTTCGTCGTACGCCTGGATCGATATGCCGATGCACAAGCCGGCGAAGAAGCAGACGAAATTCGCCG | |||||||||
gi|117228403|gb|CT846436.1|CT846436 CT846436 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): ACTCCGAATCCGACGCACCCACACCCATCCACTCCAGAGCTCCCCGCGGCACTTGGCACCACCACCACCACCACCACCGGCATCCGGCGGCGCGGGCGGCGATGGCGACCATCACCACGCAGCTCCGGTCGGCCCTCCTCTCGCCGGCGGCCTCGCCGAGCCGCCGTGCCAGGCGCGCCCCGTCGTCCGTGCGGTGCGACTCCTCGGCAGCGTCGTCCCCGTCCGCCTCCGCGTCGCTCGACGCCGACTTCGACAAGAAGCAGTTCCGCCACAACCTCACCCGCAGCGACAACTACAACCGCAAGGGCTTCGGCCACAAGAAGGAGACGCTCGAGCTCATGAGCCAGGAGTACACCAGCGACGTGATCAAGACGCTCAAGGAGAACGGGAACCAGCACACGTGGGGCCCCGTGACGGTGAAGCTGGCGGAGGCGTACGGCTTCTGCTGGGGCGTCGAGCGCGCCGTGCAGATCGCCTACGAGGCGCGCAAGCAGTTCCCCGACGATCGCATCTGGCTCACCAACGAGATCATCCACAACCCCACCGTCAACAAGCGATTGGAGGACATGGGCGTCCAAAACATTCCTGTTGATGCAGGTATTAAGGATTTCGATGTTGTCGAGCAAGGGGATGTTGTCGTATTGCCTGCATTTGGAGCGGCCGTGGAGGAGATGTACACGCTGAATGAGAAGAAGGTGCAGATAGTCGATACAACGTGCCCTTGGGTTTCAAAGGTGTGGAACATGGTTGAAAAGCACAAGAAGGGTGACTACACTTCTATTATTCATGGAAAATACTCCCATGAAGAAACTGTTGCCACTGCTTCCTTTGCAGGGACATACATCATTGTTAAGAACATAGCAGAGGCTAGCTATGTATGTGATTATATACTTGGTGGCCAACTTGATGGTTCTAGCTCCACAAAAGAGGAGTTCCTTGAGAAATTCAAAAATGCTGTTTCTCCAGGATTTGATCCTGATGTTGACTTAGTGAAAGTTGGCATTGCCAATCAAACAACAATGCTTAAAGGAGAAACTGAAGAAATTGGGAAGCTTGTTGAGAAGACAATGATGCGTAGGTTTGGAGTTGAGAATGTCAATGACCACTTCATTGCCTTCAACACTATCTGTGATGCCACACAGGAAAGACAAGATGCAATGTACCAGCTAGTGAAGGAGAAAGTTGATCTTATTCTGGTTATTGGAGGATGGAACTCCAGTAACACCTCTCATTTGCAAGAAATTGGAGAACTCAGTGGAATTCCGTCTTACTGGATTGACAGTGAACAAAGGATTGGACCTGGAAACAAGATCAGCTACAAGTTAAATCATGGCGAGCTTGTCGAGAAAGAGAACTGGTTACCAGAAGGCCCTATCACAATCGGAGTTACTTCTGGCGCCTCAACTCCGGACAAGGTTGTTGAGGATGCGTTACAGAAGGTGTTTGAGATCAAGCGCCAGGAAGTTTTGCAGGCCGCGTAAATTTTCATCAGGTTTGGTCACGGTAGCTGATGGCTTGGTGAAGGTTAATAGAACCAGTGCACAAGCGATGTCTGTACAGTAGTGAAGAATGCTACGCTTTTAGGAGCGCATACTACGGCATGTGCTGAGATTTACGTAGTATGTTGGGGGCAAATGTTGTAATCAATTATCACACGAAGAACAGTTGCTGTATCGGCTGTCATAACTTTCTGACCCCCTCAAATAACGTTGCAGAAGTATCTTTCTTCGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAGGGCCCCTTTGGCCCCGGGGGGGGGCCCGGCCCCCAATTCCCCCTAATGGGGGGTGAATTACCCCCGCCCCCGGGCCCCCTTTTTAAAACGCCGGGACGGGAAAAACCCGGGGGTTCCCCAATTAAATCCCCTTGAAACACTTCCCCTTTTCCCCCCGGGGGGGAAAAAACCAAAAAAGGCCCCCCCCCCATCCCCCTTTCCCAAAAATTTGCCACCCCTAAAGGGGGAAAAGGGGACCCCCCCCTGAAAGGGCCCCTTAAAACGGGGGGGGGGGGGGGGGGTTTACCCCAAGGGGGCCCCTTAAACTTTGGCCGGGGCCCTAGGCCCCCCTCTTTTGTTTTTTTTCCTTTTTTTTTTCCCCGGTTTCCGGGGTTTTTCCCCGAAAGTTTAAAAACGGGGGGCCCCCTTTTTGGGGTTCCAATTTTAGGTTTTTTTGCGCCCCCCCCCC | |||||||||
gi|29613516|gb|CB618529.1|CB618529 OSIIEa02H15.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa02H15 3', mRNA sequence TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): GATGCAATGTGCCAGCTAGTGAAGGAGAAAGTTGATCTTATTCTGGTTATTGGAGGATGGAACTCCAGTAACACGTCTCATTTGCAAGAAATTGGAGAACTCAGTGGAATTCCGTCTTACTGGATTGTCAGTGAACAAAGGATTGGACCTGGAAACAAGATCAGCTTCAAGTTAAATCATGGCGAGCTTGTCGAGAAAGAGAACTGGTTACCAGAAGGCCCTATCACAATCGGAGTTACTTGTGGCGCCTCAACTCCGGACAAGGTTGTTGAGGATGCGTTACAGAAGGTGTTTGAGATCAAGCGCCAGGAAGTTTTGCAGGCCGCGTAAATTTTCATCAGGTTTGGTCACGGTAGCTGATGGCTTGGTGAAGGTTAATAGAACCAGTGCACAAGCGATGTGTGTACAGTAGTGAAGAATGCTACGCTTTTAGGAGCGCATACTTCGGCATGTGATGAGATTTACGTAGTATGTTGGGGGCAAATGTTGTAATCAATTATCACACGAAGAACAGTTGCTGTATCGGCTGTCATAACTTTTTGACCCCCTCAAATAACGTTGCAGAAGTATCTTTTTTCGGTATAAATATCACCCAATTTGTTAGCTAGTACTATTTGATAGAGGTCAAATGCAGGACTCCCTGTATATATATGGCAAGTACAAGAAACGCAGGGTTCCCTATGTATAACATTAAGTCCAGAACCAATCTTGATATGCCCCATATGTTGTTATAAAATTCCATTTCTCTCTACAGGAAAAAAAAACTAGAGGGGGGGCCCGGTACCCAGCTT | |||||||||
gi|88503227|gb|CI430733.1|CI430733 CI430733 Oryza sativa (japonica cultivar-group) 4th leaf leaf 3mM SA(salicylic acid) for 1 da TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTACGACATGTAACCATAGTAATAGCATTGAAGCATAATGCAAGGCTATAAGCTAAGGAAGCAATTGTAGTAGTGGATGGAGGGAGGCACAGTTTAACGCCTTACGAGCTGTCTAGCGAATTTATTTATTTATTGAACTTAGCTGCCTAGCGAATTTAACCCATGGTAAGAGAATATGTACGCAGAGTTTAACCCCTCTGAACTGAATATCGTGCCAAGTTGAGCGAACGCCAAATAAATCAGCTTCAGTTGATGCAGCAGACAGCAGTTCTGATTGCCATCTGTCCTTGGCACCATCTTTGCCACTGTTTGGTGATAATGCGATGAAGAGTAGATAGTAGTCAGATGTTGCAGTTAGCGATATCTATTGACTANCA | |||||||||
gi|86881281|gb|CI322493.1|CI322493 CI322493 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): AAGACGAGTGATCAAACGTTGCAATCAAAAACTCAAAATCTCTTATATTGTGGGACGGAGAGGGTACTCCAGTATCTTCTAGACTTCTACACAAGGATTTCATATCTCATCACACTGCTCTAGCAGAGAACCAAACTAAACAACTAAACAACGAAACATACAAACACGTAGGCAGAAAAGGAACAAACGCACACAGAGAGAACAAAAACGGAGAAGTCCACGCTTGATCCTGACCGTCCATCTCTTTTGCAGGAACAGCTGCACCGCGATACCAACAAGACTAGACAGGAGACAAAACCGAAACCTGGGTGGCTGTCCACAGAATTTTCACAATTGCCGACCTACGAGAGCTGCCACAAACGGCCTTTTTTGGGATGCTGCCACTGCGACATTTAAGTGCCGAAACATTCGAGCGGTTTAGGTTTCATGACCCGCGGGGACCCCCTCCTGGACAGCCAACAAACCAGTATGTGTGGCAATCAACCAACTG | |||||||||
gi|88527042|gb|CI455154.1|CI455154 CI455154 Oryza sativa (japonica cultivar-group) young ear Oryza sativa Japonica Group cDNA cl TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATGTAAGATACTCTCTCAACACATTTTTATTTCGTAGCATTACTTTTAGGTACGAGTCACTAACTCACAACTACTAACATTAACACTCACTCCGTCCCACACTCCGTCCCACAATATAAGGGATTTTGAGTTTTTGCTTGCAACGTTTGATCACTCGTCTTATTCAATTTTTTTTTTGTAAATATAAAAAACGAAAAGTTATGCTTGAAGTAATGTAGATAATAAAGTAAGTCACTAATAAAATAAATAATAATTTTAAATTTTTTTAATAAGACGAGCGGTCAAACGTTGCAATCAAAAATTCAAAATACTTTATATTATAGGACGGAGGGAGTATTTATTTAGCTGCAGGTCTCCCTGCACTCATTCATCGTGCTAATC | |||||||||
gi|86890289|gb|CI321465.1|CI321465 CI321465 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): CGGAAAAATACGACATGTAACCATAGTAATAGCATTGAAGCATAATGCAAGGCTATAAGCTAAGGAAGCAATTGTAGTAGTGGATGGAGGGAGGCACAGTTTAACGCCTTACGAGCTGTCTAGCGAATTTATTTATTTATTGAACTTAGCTGCCTAGCGAATTTAACCCATGGTAAGAGAATATGTACGCAGAGTTTAACCCCTCTGAACTGAATATCGTGCCAAGTTGAGCGAACGCCAAATAAATCAGCTTCAGTTGATGCAGCAGACAGCAGTTCTGATTGCCATCTGTCCTTGGCACCATCTTTGCCACTGTTTGCTGATAATGCGATGAAGAGTAGATAGTAGTCAGATGTTGCAGTTAGCGATATCTATTGACTACCACTTCCAATGGTTGCTGTGTTATCACCATGTCACGTATTGAGCTCATATATTCCCATGAGTCCTACAACAAAATAGAGGGATCTAAAGAGGTCTTGTGTTCTTCGGAGCCAAGTCGAGAGAATGGCCAATCA | |||||||||
gi|58588895|gb|CF987203.1|CF987203 14863rsicee_0428.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa Ind TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCGCTTTTAGTGAGCGCATACTACGGCATGTGCTGAGATTTACGTAGTATGTTTGGGGGCAAATGTTGTAATCAATTATCACACGAAGAACAGTTGCTGTATCGGCTGTCATAACTTTCTGACCCCCTCAAATAACGTTGCAGAAGTATCTTTCTTCGGTATAAATATCACCCAATTTGTTAAAAAACATGACAAAAAAAA | |||||||||
gi|163922771|gb|EG712217.1|EG712217 Os5MPREST3658 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-N4C11SA, mRNA TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): ACCGATCATCATATTTGCAAACCACCGAATCAGTGGTGTACACAAATAAAAGGTGACTAATGTAGTAATATTTATAATAATGATGATATAATCTGCTGGTTCAAACATGAAAAAGACCTGATTATGGACATTGTCTTTCCGTTCTTTACATGGTACATATATTACTCAACTCACAAAAGACTAATGCTCTGTGCAGATTATAAAAGCTCTTCTGGAGGAAGAACAATTAATTATTCTTGATGAGTTAGTGCGTCTGAACAATCTTAACATCGACGTACATTTATGATAGTAATTCCTACTCCCTCCGTCCCATAATATAAAGGATTTTAAGTTTTTGCCTACAACATTTGACCACTCGTCTTATTCAAAAAATTTTAAAATTATTAATTATTTTATTTGTGACTTACTTTATTATCTACAGTATTTTAAGCACAACTTTCCGTTTTTTGTATTTACAAAAAAAATTTGAATAGGACGAGTGATCAAATGTTGCAAGCAAAAATTGAAAATCCCTTATATTTCGGGACGTAGGGAGTATGTTGCAGATAACT | |||||||||
gi|58659657|gb|CK048337.1|CK048337 43246rsiceh_10768.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCTCCAATCATCATACGACTAGAGCTAACTAGCATAGTACTCCCTCCATCCTACAGTATAGAGGGATTTTGAGAGTTTTTGCTTACAACGTTTACCACTCGTCTTATTTAATTTTTTTTCGCAAATATAAAAAACGAAAAGTTGTGCTTAAAGTACTATAGATAATAAAATAAGTCACAAATAAAATAAATAATAATTTCAAAATTTTTGTAATAAAACGAGTGATCAAACGTTGCAAGCAAAAACTTAAAATCTCTTATATTATGGGACGGAGGGAGTTCCATTCAATTCTCCAAAAGAACACTTATTATTGGATATATCACCGTCAATACCCTGAACAACCTACGGAAGCCATGTATTTCTCATCTGTTGATCTGCATCCATCACCCACCTTCCAAAATAACCAATATATCACCATACAAAAGAACACCTAACACTGATGCTACTGCCAATGCCATTCCTAATTCTAGCCTAACACCTACCTAGCACTAATAATAGTAGCAGTAATAATTCTTAAATATGATCCATTAAACTGGGATT | |||||||||
gi|86839877|gb|CI332584.1|CI332584 CI332584 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): ACGGAAAAATACGACATGTAACCATAGTAATAGCATTGAAGCATAATGCAAGGCTATAAGCTAAGGAAGCAATTGTAGTATTGGATGGAGGGAGGCACAGTTTAACGCCTTACGAGCTGTCTAGCGAATTTATTTATTTATTGAACTTAGCTGCCTAGCGAATTTAACCCATGGTAAGAGAATATGTACGCAGAGTTTAACCCCTCTGAACTGAATATCGTGCTAAGTTGAGCGAACGCCAAATAAATCAGCTTCAGTTGATGCAGCAGACAGCAGTTCTGATTGCCATCTGTCCTTGGCACATCTTTGCCACTGTTTGCAGATAATGCGATGAAGAGTAGATAGTAGTCAGATGTTGCAGTTAGCGATATCTATTGACTACCACTTCCAATGGTTGGTGTGTTATCACCATGTCACGTATTGAGCTCATATATTCCCATGAGTCCTACAACCAA | |||||||||
gi|38479774|gb|CF963863.1|CF963863 14522rsiced_19285.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indi TTGATTGCAACGTTTGACCAC EST sequence (targeted fragment marked with yellow): CTTCATTGCCTTCAACACCATCTGTGATGCCACACAGGAAAGACAAGATGCAATGTACCAGCTAGTGAAGGAGAAAGTTGATCTTATTCTGGTTATTGGAGGATGGAACTCCAGTAACACCTCTCATTTGCAAGAAATTGGAGAACTCAGTGGAATTCCGTCTTACTGGATTGACAGTGAACAAAGGATTGGACCTGGAAACAAGATCAGCTACAAGTTAAATCATGGCGAGCTTGTCGAGAAAGAGAACTGGTTACCAGAAGGCCCTATCACAATCGGAGTTACTTCTGGCGCCTCAACTCCGGACAAGGTTGTTGAGGATGCGTTACAGAAGGTGTTTGAGATCAAGCGCCAGGAAGTTTTGCAGGCCGCGTAAATTTTCATCAGGTTTGGTCACGGTAGCTGATGGCTTGGTGAAGGTTAATAGAACCAGTGCACAAGCGATGTCTGTACAGTAGTGAAGAATGCTACGCTTTTAGGAGCGCATACTACGGCATGTGCTGAGATTTACGTAGTATGTTGGGGGCAAATGTTGTAATCAATTATCACACGAAGAACAGTTGCTGTATC | |||||||||