| mature miRNA: TTTCCGTCAGCCTTGATCGCT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|66929423|gb|CX116271.1|CX116271 EI103H17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): CTCGTTGAGGTACGGTCGGAATCCGGTGTGACCCACGCGTCTGCCCACGCGTCGGGCAGGCATTCCCACTCCTTCCTGGGGATCATGGCTGATGGAAGCTAATTTTCTTGAAGACCAATTTGCTAAGAGTGGAGAGCATCAAAACATTGTGAAAGCCCATTCTGTCATTGATACGGTGGATCGAGCCTCATCAGTAGGTGAACATATTATTCTGAGGCTTGGGAACGGCACACCTTTACATGTCAAGAATATATCAGAGAATCCATCTGCCAGTGTCCATGATGATTTTACTGTAACCGATAAAGCAAATTCAATTAAATCAAGTATAAGTGAACATGAAAGGAATCAGCCTGTTGAGGAACCATGGATCCTTGGATCTGTCATGGCACCAAAGAAATCTGTTGCAGCAGGGAAGCACGAGAAAAACAGATGGAAGTTTGTCAATAAGAAACAGAACTTGAGTGAAGTAAGTGAAAACATACCTGAACAGGATCAACCTGTAGAGGAGCCATGGCTATTTCAATCCAATGTGGTAGCAAAAAAACCTGTAGTTCAAACTAAAGGCGAAATAGAAGCCAAGGGATATTATCAGAAAGCTTACTGAAATGGATTAACCTCCAGCGCCTTTGGAGGACGTAAGGCCACTAGTGGAGAGCCTTCTTCAGAAGTCTAGTAATAATTCATCAGGCTGTGACCTGGGAAGGATTGGGTTTGGGAACTGGACACTGGGTTGACCTTGTGTGGCCCCTAGAAACATGTCCCGGAGAGGATATTATGCGCTGATAGAACTGGTCTCCCCGATGAGGGCATGGGAATTGGACCCAGGGCTCCACTATAATAAAACAGACACATTGTTTCCACGG | |||||||||
gi|44665543|gb|CR278977.1|CR278977 CR278977 Oryza sativa library (Han B) Oryza sativa cDNA clone y668d12p5, mRNA sequence TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): GCCACCTGAGTTACCGGGAATCGGCATTATGCCCGGGTGGTAATAAGGGGTAAAACATCATGCTGTGTGCGTGGCTGGGTCAATAGCGATCAAGGCGGACGGAAAATGGTCAAGAATTGACGGAAGTGTTAAAAATGGGAACAGAGTGAACTTTGGGTGCTATTAAAGTGAACCGGCATCTTTCGATACTATAAAACAAAAAACGTAAACTTTCGATGCTATATAACCAATTTGCCAATTAAAAAACAAGCTGGACAAAAGTCCAATAGAAAGCGTTCTGTGAAGGGAAACATAAGCAAGTTTGTGTTCAGAAGCAGTTGCCCAACTGTCTCTTTCACAGCTTATTTATGTTCTCTCTTGATAAGACATTTTCCTCTGAACAGTTGTCCTTGGCCACGAGAACCAGAGCGAGGATGGGGTTATCCATGTTGAATTGTTGTCACAGAATTATTGGCGGCGTCCCAGCATATACGTGTTGACCATGAATAAATAAAACCCAAGAAAACAAGACGTGTGTTGCTCTCTGTGCAGTGTAGCATATCGCGTGTCGTCG | |||||||||
gi|88695120|gb|CI739158.1|CI739158 CI739158 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): TTAGATGTTAATAAATCTAGACATATGTATGTGTTTAGATTCATTAATATGTATATGTATGTGAAAGTCTTACATTCTGAAACGGAGGGAGTAATAGCTACGACCTCGCTTAGCCAGCCAGCAAGGCTGATGGGAATTAATTTCAGCCAGAATGCATGGTGTCCCCGAGTCCGAATCGGGGAAGGGTGCATGCACCCTGGATTTTTCACATTTTGGTCCTTTTGAAAAACTTATTTCGCAAATAGACCCCAAGAAAAACTTATCCCAAAAATGATCCTTTTTGGGGCGCCAGAGTGGCTGGCGCCGTCATTCAACAGGACGGCGCTAACCTCTTTGGCGCCGTCCCC | |||||||||
gi|58693025|gb|CK081712.1|CK081712 85561rsicen_28327.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indi TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): CTACTAACGTGATGACTCAGCCATAACCTGTAAAGGATTCTGTACAATATCGTGGAACCTCAAATCAGATGTGCTGGATGGTTACATAATCTTCGTCACTGGAGATCCAGTTACCTTGGGCTGTTGGGAATCAGATATGGCTGTTCAGTTGTCTCCTTCTGTTGAAAGTAACAACTTATGGACGGCCGAAATAAAGGTACCATATGGTGTGCATTTCAAGTATAACTATTTTGTTCGAGAGGAGAATGACGCCTCTTCTGATATCATATGGAGGCCAGGTCCTGAGTACTCCTTGTCAATACCCCCAGTTGGCCGGAAAAAACATGTCATTGTTGTGAAAGATCTGTGGATGAAAACTAGTGTGGCAGGCATTCCCACTCCTTCCTGGGGATCATGGCTGATGGAAGCTAATTTTCTTGAAGACCAATTTGCTAAGAGTGGAGAGCATCAAAACATTGTGAAAGCCCATTCTGTCATTGATACGGTGGATCGAGCCTCATCAGTAGTTGATTGGCAGGTGAACATATTATTCTGAGGCTTGGGAACGGCACACCTTTACATGTCAAGAATATATCAGAGAATCCATCTGCCAGTGTCCATGATGATTTTACTGTAACCGATAAA | |||||||||
gi|29656725|gb|CB653000.1|CB653000 OSJNEc03J18.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc03J18 3', mRNA sequence TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): GAAGTATGAGCCGGGAATGAACATTGTTTCAAACGCCTCCTGCACCACCAACTGCTTGGCTCCTTTGGCTAAAGTCATCCACGACAACTTCACCATTGTTGAGGGTCTCATGACCACCGTTCATGCCGCTACTGCCACCCAGAAGACCGTCGATGGTCCCTCCAAGAAGGACTGGCGTGGAGGACGTGGTGCTGCCCAAAACATCATCCCCTCTTCAACTGGAGCTGCCAAGGCTGTCGGAAAAGTCATCCCCGAACTTAACGGAAAACTTACCGGTATGGCTTTCCGTGTGCCTACTCCTGATGTGTCTGTCGTCGATCTCACCGTTCGTCTCGGCAAGGATGCCACCTATGATCAAATCAAGGCCGCTGTTAAGGCCGCTGCCAACTCTGATCAATGGAAGGGAGTTCTCGGATACACCGAAGATGAAGTCGTCTCCACTGACTTCCTCGGAGACACTCACTCTTCGATCTTTGACGCTAAGGCCGGAATTTCTCTCTCGCCCACTTTCGTGAAGCTTGTTGCCTGGTACGACAACGAATACGGTTACAGCAACCGTGTTGTCGCCCTTATCAAGTACATGAAGACCAAGGACAACTAAATGTCGTCCTCAATTTCAAAAAACATCTACTTGAGTACCGTCGTTCGAAATGTCGAAATTGACGCTCGGGTTAGACTCAATCAGAGGATCTGAATTCGAAATAGGTTCGATGGTCCTTCATATAAGTTGCTCTTTCAATAGTTACCCTTAATGGGTTATTCTTAGTTCTTATAATGGTTATTCTGTTGAAGGATACGACGATGAGGATAAGATAAATTATAACTTTCATCTAGCCGAGGCTAAATTCAAAAAG | |||||||||
gi|88356012|gb|CI653422.1|CI653422 CI653422 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated(45Gy), immi TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): GGTCAGTTGATAAAATCGACACATATCTCTTGTATTTGCTGTTTACATCGACTTATTAGAGAAAATCATGGCACGATGGGGTTTGGTAATGTGTTTAGTGCTCGCAGCACTTTTACAGATCAACGCTGATGGAAAGAGTAATGCTCAAACTGCTGTTACTGGCCTTTTGAAGAATATGATGGACACCACTAAAGATCAAACACAATCATTGATAAACGGAATCGGACAACAAAAAGCTGGTCTTGTGGATCGTACTAAGACTGAGGAATTAACAAGTATTGTCACCCAACTACCTGATAAATTAACTGCACTCGCTAAAGCAGCTGAAATACCTTTGGATGCCACCGTTTCAGCAGCTGCCAATGTCATCAACACTGCAGTCGGTACAATTAATAACGCTGTTGGTGCTGTTGTTACAACCACTGGGCGACGTTGT | |||||||||
gi|86855537|gb|CI267066.1|CI267066 CI267066 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTAAAAAGAAATACTATTATTTACACATAGGCCCTCGTTTTTCAATCTAATCACATAGCCATCCTGACATTGTTTCTTCCTCTGACACGGAATCGCGGAGTAAATTACCGCTCGATTTCAACGGCGTTCCCGCCACCCGCCACGTGTCCGAAGCCACCTTTCGCGGCCTCGAGGTCGTCCTCGTCGTCTCCGATGCTGAACCTGCCGCCGTCGCTGTCACCGTCGCCGCCGCCGCCGCCGCCCTTGACCAGCGGCAAGTACCTCGGCTCCTCCGGGTACAGCTTCGTCAGGTGGAGGTAGAACACGACGACGAACACCACGGTGGCGGTGAGGTACCAGCTGAACTGGAGGTTGACGAGCGACTTGGCGCGGTGGAGCGCCTCATTGGTGCGGCACCGGACGACGTCGTGGCCTTCCTCGAGGTTGAGGAAGCAGCCCTTGGGGATGAGCGCCGGGGTCCAGAGCATGACGCCCATGACGACGAACCAGACGCCCTGGAACACGAAGCTCGCCGACCGGACGAGGCTGACGGAGAAGCTCCTGGGGCAGGGGATCCCGAGCACCGTGGT | |||||||||
gi|117229055|gb|CT848785.1|CT848785 CT848785 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): ATTTTACTCAAACCTGGAAAACTACATCATATCTGTGGAGAGAATCAAACAGTTCATGCATCTGCCAGCTGAGCCTCCTGCTGTTATTACTGACAGAAGGCCTCCCCCTTCATGGCCATCTGCAGGAAGGATAGAATTGGAGAACTTAAGAGTAATCAAATGAAATCTTATAAGAATCAATTAAATATTTTCTCTGATATTGTGCAATTCTTATATTACTATGTCATTGTTTGGAAGGGCAAGTACCGCCGAAATGCGCCTACGGTATTACGCGGGATTACCTGCACATTTGCAGCAGGACATAAGATTGGAGTTGTTGGAAGAACCGGGAGCGGGAAGACGACTCTTCTGAGCACATTGTTCCGCCTTATCGACCCGTACAGCGGGAGAATTCTCATCGATGATCTTGACATTTGCACCATAGGGTTGAAAGACCTGAGGATGAAGCTCAGCATCATCCCTCAGGAGCCAACACTTTTCAGAGGCAGTGTAAGGAGCAATGTTGATCCTCTGGGTCTGCACACTGATGAAGACATTTGGGAGGCTTTAAATAAGTGTCAGTTGAAGAAGACAATCAGTGCCCTTCCTGGCCTTCTTGAATCACCAGTGAGCGACGACGGCGAGAACTGGAGCGCCGGACAACGGCAGCTCTTCTGCCTGGCCCGGGTCCTCCTCCGCAGGAACAAGATCCTGGTCCTCGACGAGGCGACGGCGTCCATCGACTCGGCCACCGACGCCGTCCTGCAGAGAGTCATCAAGCAGGAGTTCTCAGGGTGCACTGTGATCACCATAGCTCACAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACTCTGCCTTCTGTAAGCTTGTAGCTGAGTACTGGTCCAACTATAGCTGAATCTGCCAAGAAAAACGGTCAGGAACATCAAATGCAGAAGACCTTCACTGCTTTATTCTTCAGTGAATAAGTGGAACTGGAAACTGGGACATTGCATTGCTGGCCAATGATCATCCAGATGGACATATATGATGCACTAATGATCTGGAAAGTATGTATGAGGGGAGCTCATTCAAAACCAGGGGTTCATGCAATGAAATTGCAAGCCTTCTCCCAACAAGACAGAGCAGCAGACAGGATAT | |||||||||
gi|117232253|gb|CT860021.1|CT860021 CT860021 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): AAACAAACAGCGTGGATGAGTACTAGGATTACATTCAACCATTTTGTAGTTTGTACACACTCTGGTGATGTGGACATAAACAAAAGAAACAGATAACTCAAGACGACAACACGCAATATGCTACACTGCACAGAGAGCAACACACGATCTTGTTTTCTTGGGCTTTTATTTATTCATGGTCAAACACGTATATGCTGGCGACGCCGCCAATAATTCTGTGACAACAATTCAACATGGATAACCCCATCCTCGCTCTGGTTCTCGTGGCCAAGGACAACTGTTCAAAGGAAAATGTCTTATCAAGAGAGAACATAAATAAGCTGTGAAAGAGACAGTTGGGCAACTGCTTCTGAACACAAACTTGCTTATGTTTCCCTTCACAGAACGCTTTCTATTGGACTTTTGTCCAGCTTGTTTTTTAATTGGCAAATTGGTTATATAGCATCGAAAGTTTACGTTTTTTGTTTTATAGTATCGAAAGATACCGGTTCACTTTAATAGCACCCAAAGTTCACTCTGTTCCCATTTTTAACACTTCCGTCAATTCTTGATTGTTTTCCGTCAGCCTTGATCGCTATTGACCTGCCACACACGCGATATGACGTTTCTACTCCTCATAAGCACAAGTAGAATGCATGGCAATAAGGGGGTAGAAACATCATGCTGTGTGCGTGGCTGGGTCAATAGCGATCAAGGCGGACGGAAAATGCTCAAGAATTGACGGAAGTGTTAAAAATGGGAACAGA | |||||||||
gi|86859081|gb|CI277008.1|CI277008 CI277008 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TTTCCGTCAGCCTTGATCGCT EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTATTTTTGAAACTGAAAAGGCACCGTTTAACTGACCGAAGACCGATTACGGCTGACTGAAAACCACTACCTTTAAGAGGTTGGGTTTAACTAAGCTAAGAGGACACGACATGATAGAAACTGAAGATAGTTTGGGTCTTGCCCAGGATACTAAGGCTTGAAGAGCCAAAGCTAGAAACTGAAGACTCTGGTGCAATGAACCCGCCGGCCTCCAATCCATAAGCTTGTTGGTATTCAGCTTAATTCGTCGTCCTAAGGAAACTGGAACTCATCATCCTCGGCGCGAGTGGGACTTGTTCTGGCTTCACAGATCATCGTTCGGCTTGGACGACGGAGGGAAGTCCGTCACGACGACTCTACCAAAAGGATGGTCATCGTCGAACTCGATGTGGCCGTCGAAGCCGAAGCCGCTGCCGTCCCTCGCCCTCCTGTCGGCGTCGGCGCGCATGCGGTTCAGCCGCGCCGACTCCTCGTCGGTGGCCCGGGGAACCTCGAAGTCGTCGCCGGCGCCACCGGCGGCCGACTGCGTCTTCTCCGCCCAGCTGTCGAGCCACCGGGACTCCTCCGCGTTGGCGTACCGCATACTGATCTTGATAGGTGGGCCGTCGTCGTCCGATGTACCCACCGGCATGGAGGT | |||||||||