| mature miRNA: TTTGCGAGTTGGCCCGCTTGC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117229205|gb|CT853744.1|CT853744 CT853744 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTTGCGAGTTGGCCCGCTTGC EST sequence (targeted fragment marked with yellow): GATTCTTGCTTCTCCTATTCCTCCTAAGCTACCTTCCTACTTTTCCTGCCTCCGATCCACTCCCATCCACACATGCATCAATGCATGTCTTTCCCATGCATCCCCATCTCCGCCGCAGCCCTCGTCGTCGTCCTCGTCCTCAGTCTTCACCTTTTCTCCCCTCCTTCCCGCGCGCATATATATACCCCTAAATCTCCCATTCTATCGTCGACGGCAACCGCGCCATCTCGCAAGAAGAAGTAGTAGTTTGGGTTGGCTAATTAAGTTAGGTAGTCATGGAGACCATGTGGTGATCGTGGCCGTTGCATGGACACCATCTTCGTGCTCGGCCAAGAGTCCCGGCAGCGCATCCTCCACCGCGCCGCCGCGCGCCTCCCCGGCTGCGCCTACGTCTGCGCCTGGGCTCCCCTCCCCCTCGTCGCCGCCGCCGGCCTGCACCACCAGCGTCCTTCTTCCGGCGGCGCCGCCGGTGCTGCGCGTCTGCTCTACTGCGTCGACGGATGGCTCTCCGGTGGTGAGGACGGCGGCGGCTGCGTGCGCGCGCTGTTCGACGCGTACCGGGGATCCGTCTGCGGCGCCGTGACCGGGTGCGTGCCGGGGTGGGCGTACGTCGGCGGCGGCGGCGGCGCGTTCATGGAGCTCTCGGAGCTCGAGCTCGTCGCCTCCGCCTCGCTGCCGGTGCAGCAAAGCTTCTACCAGGAAGCTGGCATTAAAAAGGCGGCGTTCATGGGAATGCGAGAACCGGCAAAATCAAGGTCGGCTTCTCCACCGGCCCCGGCGGAAAACCTACCGGGGGCGGCGGCGGGCGCCGGCAAACTTGGCAGGCAAGCGTGGAAACAAGTCTTTCTCCCAAAAACCTTCTTTCAAACAATTCGCTGGCCCCAAGAAGCTCCTCCCAACTTGCCGACCCAAAACCGGGCCCGTACTTCCGTTCTTTTTTTCCCTCCCCTTCTTCGGGGAAGCCCCGGGGCCAAAAAGGGACGCCCCCCCCCCCCCCCTTTCCTTTTTTCTCCCCCACAAAAAAATAAAAAACCCCC | |||||||||
gi|86524746|gb|CI164952.1|CI164952 CI164952 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group TTTGCGAGTTGGCCCGCTTGC EST sequence (targeted fragment marked with yellow): TTTTTAAACGGACCAACTCGCAAATTAAAAAAAAACATTTATACTCAACGAGAACAATGTGTTTCAATCAATCGTCAGAAACAAAGATACAAACAGCACGAGTAAATCACAATCCACGTTTGCGGTTAAGCACACATGAGCTGTTACATGCTCTCCCAGAATCCTCTTGCCAGGTGATTCAACCATTACCGAATCTCAAACTCCCAATACAAGTGACTGGACTAAGTCACTAATACGGTGCAGCTCCATGACTGCTGCTAATCGACAGTCAGCAATAGTCCCGTTCTTTTGTCTATTGTGCACGAGGCCTACTGTTCTCCGCAGCCCTCACTTGGAGAAAGTATGGGTGTGCCATAGCTTCACGTGCAGTAAGTCTATCCTGGTGATCATAGCGAAGAAGCTTGTCAAGGAAATCGATGGCCTCTGGGGATACTAGATGTTGGTTGTCAGCATTAATAAACTTTGACCAAGGTTTCCTGCTGTGCCTTCCAACGAGGGCTTCAAGCTGTGGGTCAAGCTCAATACGGTACTTGTTCAAGTATGAATTCAG | |||||||||
gi|44673814|gb|CR287248.1|CR287248 CR287248 Oryza sativa library (Han B) Oryza sativa cDNA clone p551c03p5, mRNA sequence TTTGCGAGTTGGCCCGCTTGC EST sequence (targeted fragment marked with yellow): TCCCCGGGCATCGGCCATCATGCCGGGTTCATATTCCATACTGGCACACAGCAAGCAAGCTGCCTGTGTGTCTCTCATCATGCACCTCGCATCGGCTGTTGCATGGTTTCAATTTTCAGCTTTTGTTTCTTCCTCTGTTCTCGTGCACTGCTGCATCCTATCCCCCGCATGCATGTTCATTTGCCATTTCGCACAAGCGGCGAGGACATCGTCAGCATCACACAAACACAAAACAACAACAAAAAAAACACCATGTCGGCCGCCCTCGGCCCCAGTCGCACTCTCAGCCTCGCAGCCACAGCTTATGCCATGCGAGCCCGCCAATTCGCAAGCTCCACATAGAGCCCAATACAGCCCCTCATCAGTGCAGATCGTAATTCACACATTCCACTGAGCCCGAACGTTTACACCAAAGTACGTAGCATAGCGGCAACACACCCTGAGCGGTAACACCCCAACTTACAATCGACCTTAGCCAGCCACCATCCCCCCCTATTCGACCCAAACAGGACGTCACTACACCGCACAACAGGCCCCGCACACCGCATACGCCCCTACCCCCACTCAGTAAGCAACAAAAA | |||||||||