mature miRNA: TTTTAATAAGACGAACGGTCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|88210231|gb|CI210080.1|CI210080 CI210080 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTAGCACGTGTTTAACCGTTCGTCTTATTAAAAAAAATTGTGAAATATGTAAAACTATATATGTACATGAAAGTATATTTAACAATGAATCAAATGATATGAAAAGAACAAATAATTACTTAAATTTTTTAAATAAGACGAATGATCAAGTAAAAAGTCAACGGTGCCAAATATTTTGATACGGAGGGAGGGAGTAATCTTTTTGGCACAGATCGAGATTGGATAGGACAAACAACACCAATTCTCTTCCCCGTGCACTCAGGTTGACCGGCATACGAAGGCGCAGCCCTGAACTATTCAAAACTGGAGGACGATCCGTTCGATCCATACTTCCCGTTGCACTTGCACAGAGAATTAAACTCACCTGGCCACCACCGCGACTCCGCGACCGTTTGCCGTACGGGAAGTCATGGCTCCTGCGGCTGCCTAACCTGCGAATGCTTCCCAGATCGGCATGCAGGCCGCCCGCCGCCGCCACGACGGGGAGACGTTCGTCTCCCGCATGCAAATATGCAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCG | |||||||||
gi|117230878|gb|CT854114.1|CT854114 CT854114 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GGATCCCCGGGCTGCAGGAATTCGGTAGGCCTTTCAGGCCAGTCAAGACGACATGAAAGAAAGGGAGTAGGCATGTAGCCCGACTCTGCGGCACGCAGCATTATATCAAGGAACCAGAGATCCACAGAGACGTTCAGGCATCAGACCTGCAGAGGCAATAATCCATCCATGGCAACTATCATTCCAGTACTCCTGCGGCTGCTGCTCCTGCTGCTCCCGCTTCCCTTGATCCGAGACCACCTCTGGGCGCCGAGCCACCGCCGGCCAACGCCGCAGGACGATGCGGGTGAGCTCCACCCGATCTTCCTGGTGCCCGGGGCGACCTGCAGCAACGTGGAGGCGCGGCTCACCGAGGCGTACCGGCCGTCGGCGGCGCACTGCGGCGCGATGAAGGGGAAGGGATGGTTCGGGCTGTGGGAGAACAACACGGAGCTGCAGGCCCACGACTACGCGGAGTGCTTCCAGGAGCAGATGGCCCTGGTCTACGACCCCGCCGCCAACGAGTACCGGAACCTGCCCGGCGTCGACACCCGGGTGCCCAACTTCGGCTCCGTACGGTCGTTCGGCAGCAAGGACGTTTTTAACCCGTAAGTTTCGCTCCTACCAGCCACGAATCACCTGATTAAAATGGCATATATTATACTCCCTCCGTTTTTTAATAGATGACGCCGTTGATTTTTTCGTACATGTTTGACAATTCGTCTTATTCAAAAACATTACATAATTATAATTTATTTTATTATGAGTTGTTTTATCACTCATAGTACTTTAAGTGTGATTTATATTTTATAAATTTGCATAAAATTTTTGAATAAGACGAATGGTCAAACATGTAAGAAAAAGTCAACGGTGTCATCTATTAAAAAACGGAGGGAGTATAATCTTTAGTCTCCTATGATTGAATTTGTTTGTACATAGGCTAGTTGAAGGTAGACGCTACGTACAGAACTGCAAGTACAAAAATTAACATTCCCACCAAAAGAATTCACAAAATCTTGGGAATCAAACTCGGTAAAAGAAGCAATGGGAAACTAGTTCGATGATGTACCACACAGGTATCCTGTTCAACTATGGGGAAAAAATTCTTTGTAAAATAAGCAAATGAGCAGTTTCTGATATTTGTCGCAACATCTAAGCAATTGATCTTGGACGGCCTAACATTTGGGCGATAATTGGTCGGACGTCATCTG | |||||||||
gi|88533952|gb|CI462629.1|CI462629 CI462629 Oryza sativa (japonica cultivar-group) 1 week after flowering ear Oryza sativa Japon TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): AGAGCAAATAATCTGTTTCGATAATCTGAGAAATAATACTACCTCCTTTTCAAAAAGTATAATGCCGTTGACTTTTCCACAATGTTTGACCATTCGTCTTATTAAAAGATATAGTATAAATATGTAAAATCATAGTCGATTTTATTGGATGATAAAATAAGTCACAACAAAATAAATAATATTCATATATTTNCGATAATAACATAAATGGTCAAACGTTATGCGACAAGTCAATGGTGCCATACATTTGGAAACGGATGGAGTAATAATTTGAAAAGAGCTAAGCCTTAGTGCATTACACCGCTTAACCCACCTGTCAAATATGTTCGGATAAAATCATTACAATGGTCAACTAACTATAAAACAAAATCTTCATATATCATAATAGCCAATCCAAAGCATAGGCTATCATAAGAGTCTT | |||||||||
gi|87008482|gb|CI314940.1|CI314940 CI314940 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): CATTAACATCAATATAAATATAGAATATGCTACAATAACTTACTCTATGAAATGGTGGAAGTAGTACACAATACTACTATAATATTCCCATCAAATTACAGACTTCGTGAATGAGGTTGGGTAGTTAAAACGTCTCACATTTGATAATGGCAGATAGTATTTTTCCACTCTGCTTAACTCTTGTACTAGCTAGTACTCGCTCCCTCGGTTTCTAAATATTTGACACCGTTAACCTTTTTACCCCATATTTAACCGTTGGTCTTATTTAAATACTTTTAAGACGTATATAACACTATATGTCTATCTATCAGTATATTTATCGATGAATCACCGTGATAGGCCGCGAATTACTCTTAGTTCCTTTTTTTATCATCCAACGCATGGTCG | |||||||||
gi|88205218|gb|CI205067.1|CI205067 CI205067 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGTTTAAAAAAATCGAACGCGTCGAATATTTAGAACCAGAGGAACTATAAATTATTCATGGTGCAGTGCATGTAGATGTAGCTAACCTATATATATATTCCCTCCGTTCCAAAATATTTGACGCCGTTGACTTTTTTTAAACATATTTGACCATTCGTCTTATTAAAAAAAATTAAGTAATTATTAATTTTTTTCTATTATTTGATTTATTGTTAAATATACTTTAATGTATACATATAGTTTTACATATTTCACAAATTTTTTTAAATAAGACGAACGGTCAAACATGTTTAAAATGGTTAACGGCGTTAAATATTTAGGGGATGAGGGAGTATATAGCTAGCCTATTCTAGATGATACTGATTAATAAGCGCGACAAAGCCGGCGAGGTAGAAGACGATGAGCGGTATGTCGAGAACGACGTAGTGGGCGACCAGCATGTGCTTGTAGCCGGACGCGGCGCAGACCCCGCCGG | |||||||||
gi|88720836|gb|CI744135.1|CI744135 CI744135 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GATGGGTATCACCGCGTGCAACGATATTATTGTAGAGAATCTCTTACCTTATACTCCCTCCATCCCAAAATATTTGACACCGTTGACTTTTTTAAATATATTTGACCGTTCATCTTATTCAAAAAATTTAAGTAATTATTAATTTTTTTTTCTATCATTTGATTCATTGTTAAATATACTTTTATGTATACATATAGTTTCACTTATTTCACAAAAGTTTTTTTAATAAGATAAATGGTCAAACATGTTTAAAAAAATCAACGGCGTCCAACATTTAGGGAACGAGAGAGTAGATAGATAGACGGTATATTTTGGAAGTACTTTTTCTTTTTTTGGTGAGAAGTCTATGCGTA | |||||||||
gi|33381490|gb|CF196833.1|CF196833 Ir64vi1.1_C03 IR64-VI Oryza sativa Indica Group cDNA clone IR64-VI1.1C03 5', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): CATGACATGTTCTTGGACCTGGAACGCTGCGACGACTCCGGCGAGCGCACCTGCGGCTTCCCGCGGATGGAGCAGTGGAAGAAGGAGATCTTTTTCTCGTCCCTCTCCGACATGGTCGACGACATGGAGAGCTTCCGCGACGGCTACCACGACAGTGACCTCGTCCGCGACGGCCTGCGCCGGCACGGCTGGACTCCCGTCGCGCCGCGGCCGCAGGAGGAGGACGACGACGCAAAAGCAATTGGAGTGGCGAACATATAACAAAAATTACCGGGTGCAATACGTACTCCCTCCTTCCCTAAATATTTAACGTCATTGACTTTTTAAAACATGTTTGACTGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACANNNNNGTATANNT | |||||||||
gi|86901243|gb|CI326086.1|CI326086 CI326086 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GGGAAATGTAAATCAGGAAAAATTGTACAAAGATCAACTTTTTTTTTACATTTTTGTAGTTTTGCAACTACAGATTGAAGTCGTATATACAAGAGGGTGATTCATCCATGAATCTTTTTCCCCAGTATTCTTTTCTTTCTAAACTCTAATAATTAAACATACTCCATCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTTGTCTTATTAAAATAATTTGTAAAATATGTAAAACTATATATGTACATGAAAATATATTTAAC | |||||||||
gi|29670009|gb|CB666284.1|CB666284 OSJNEd13C02.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd13C02 5', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GAGCAGAGCATTGTTCTTCTTCTCTAGCTATTAGTGGTGGGGAATAATGGCTCCCGCCACCACCGCAGCAATGGCCCTCGCGCCGCCTCCTTCCCATCACCATCACCATCACCATGTCAAGCAGCTGCAGCTCCCTCCGTCTGTCTCCGTCTCCGTGCCCCTCCGCTCCGGTTTCCTTGGCCGCGCACTGCCTGCTGCTGCCCACCCACAGCCGCTGCTCGCCGCCGAGAGCCGCCGCAGCAGCGCCGTGTCCGTGCGGATGTCGTGGGACGGGCCCCTCTCCTCGGTCCGCCTCATTATGCAGGGCCGCAACGTCAAGGTTCTCCTCTCCTACTGCTACCACTAGTTTGCTTCCCTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATGATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTATATATAATTCGGTAATGGAACTAGAGTATTTGTTTTATTAATTGGACCTTTATGAAATACTAGTAGAATTCAACGAAACTACATTCTTCTTTATTGGTTATATTAGTAGTAATTTGCTTCACTAGAATTCTATTTTATACTAGAGAGATTAAAAATTATTACAAAACTAACTGTATACCCGTTGCAACGGAATAGTAATATGGACCTATTACTTATTACTACCTCCATATTTTAATGTATGACGCCGTTCACTTTTTGTCCAACGTTTGACCATTCGTCTTATTAAAAAAAATTATGTATCTATTATTTATTTTATTATGACTTGATTCGTCATCAAATA | |||||||||
gi|112786994|gb|EE591840.1|EE591840 FU_RAY02a-2-E07.seq Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mR TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): ACAGCTTGCATAAACTCGCTCAAACAGGCTTTAATCAACTTTGAGCCTTGAACGAAGGAGAAGCCAGTGACATCCATGGATCAGGTGGACGTCGACGTACAGCAGCGGAAGGATGGCTCGCCGCCGGCGGTGGCAGTGACGCTCCGGCCGCTCGGGCTGGCGGACGCCGACGACTTCATGGCGTGGGCGTCGGACGAGCGCGTGATGCGGTTCCTGAGGCGGCCGCTGTGCGCGGCGCGGGAGCAGGCCGTGGCGCAGATCAGGGACACGGTGCTGGGCCACCCGTGGTTCCGCGCCATCTGCGTCGACGACGACGACGCCGGCGCCGGCCGCCGCCCCGTCGGCCAGGTCTCCGTCTGGCCGTACGCCGACGAGGGCGGCCACAGGGCCAACCTCGGCTACGCCCTGTCGCACGGCCTCTGGGGCCGAGGCATCGCCACCGCCGCCATCACAATGGTGGTGGCGAGGGTGTTCGACGAGCTGCCGGGGCTGGAGCGGCTGGAGGCGGTGACGGACGTGGAGAACGTGCGGTCGCAGAGGGCGCTCGAGAAGGCCGGGTTCAGGAAGGAGGGCGTGCTGCGCAGGTACATCGTCCGCCGGAGCGGCGAGGTGATGGACGCCGTCATCTACAGCTTCTTGGCGTCCGATCGACCGTCCGCCCATGGCGCGACGCGAGGAGAAGCACCCATTACATTCTACGGGAAGTCTGTGTTAGTGTAGTAGTAATCTGTTAAGAGGATGATTACCATGGCTGTCAGATGATGTCTAGTTCTATCAATATGCTCTAATTAAACGGTTTGCAGCTAAATTGGAGTGAGGATATACGTCTCTCACAGGCATCAAAATAAAAGATGAACAACTGATTTTTCGATTTGTAATTAATTTGTTAAAAATAACTATTATCCCCGCTTAAATGTATAACGTTGTTGATTTTTGAGATTAATTGTGTTTGACTATTCGTCTTAATAAAATATACTTCATCCGTCTCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|117242356|gb|CT842967.1|CT842967 CT842967 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): ATGTAAGTTCCACAATCGATGACGTAGATGAGTAGAAGCTGAACAGATTGGCAGAAGCAGAAGCAGAAGCAAAAGATGATGAATTCATCTGAGCCGGTGAAGCTGATCGGCGCTTTCGGCAGCCCGTTCGTCCACCGTGTCGAGGTCGCCCTGCGCCTGAAAGGAGTGCCCTACGAGCTCATCCTCGAGGACATGGGCAACAAGAGCGAGCTCCTCCTCGCGCACAACCCCGTCCACAAGATGGTCCCCGTGCTCCTCCACGGCGACCGCTCCGCCATCTGCGAGTCGCTGGTCATCGTCGAGTACGTCGACGAGGCGTTCGACGGGCCGCCCCTCCTCCCCGCCGACCCCCTCCGCCGCGCCATGGCCCGCTTCTGGGCTCACTTCCTCGACGAAAATTGCCTGAAGCCGTTGCGGCCGGCGCTGTTCGGGGAAGGCGAGGAGCAGAAGAAATCCATGGAGGAGACACGGGAGGGCCTGACGGTGGCGGAGGCGGAGCTCAGGGGCAAGCGGTTCTTCGGAGGCAGCTCCATCGGCCTCGCCGACATCGCCGGCGGTGGCGTGCTGGCTCACTGGGTCGGCGTGCTCCAAGAGGTCGCCGGAATGAGCGTCCTGAGCGACGGCGACGGCGAGTACCCTGCTCTGCGCCGGTGGGCGAAGGATTACGTCGCTAATGAATCCGTGATGGAGTGCTTGCCGGATAGAGATCGGCTCCTCTCCTACTTCACCGGTATCAAGCAGAAGTGCGTTTCCGTGGCCAAGTCTCCGCTGCCAAAGTACTCTCTTCTTCCCTAAATATTTACGCAGTTGACTTTTTTAAATATGTTTAACTGTTCGTCTTATTCAAAAGCTTTTGTGAAATATGTAATATTATATATATACATAAAAGTATATTTAACAATAAATTAAATGAAGAAAAAGGAATTAAAATTACTTTAAATTTTTCAAATAAGACGAACGGGTAAATAATTTTTAAAAAAGGCAACGGGGTCAATTTTTTGGGGGGGGGGGGGGGGGGGTAAATAAGGGGGGAACGAAAAAATAAAAAAGGGGGGGGGGCCCTGGGGGGGAATTGGGTTTTCTTCTTTTTGTGGGGGGGGTGTGTGGTGGGTGTTGGGTTGTGTGCGGGCCCCGTTTGGGCGGGTGTGGGGGGTAATATTTTTTTCTCGGGGGAGGGGCGGGGGCGGGGGGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGG | |||||||||
gi|87016014|gb|CI281757.1|CI281757 CI281757 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TGGACAGAATTTGCACAACTAGCACAAGCCACATACTTCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTAACCGTTCGTCTTATTCAAAAATATTTGTAAAATATGTAAAACTATATGTACATGAAAATATATTTAACAGTGAATCAAATGATATGAAAAAAATAAATAATTACTTAAATTTTTTTAATAAGACGAATGGTCAAACATATACTAAAAAGTCAACCGTGTCAAACATTTTAAAATGGAGGGAGTATATAGCAAGCATTACAAAGTGTCTCATACAGATAAGCCACGGTACATATAAGTCATCGACGATAAACATTACTTAGTGTCTACAGACATAATTGCACACATCACATGTCGGCGTGGAACAGCCGTTGCCGCCGGCTGGCTACCTCCTGGATAGGCCTGACAGATATTAGCACCTCAAGGCCTACAGTCTCCCTGCTGCAGCGGTGTTGGCGAAGATGAGGCGCTGG | |||||||||
gi|88568354|gb|CI499071.1|CI499071 CI499071 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): ACCTAATCTTTTATACTACCTCCGTTTCAAAATGTTTGACACCGTTGATTTTTTAGTACATGTTTGACCATTCATCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATCGTTAAATATACTTTTATGTACACATATAGTTTTACATATTTCACAATTTTTTTTTAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAATATTTTTAAACGGAGGGAGTAGTTACTATTACAGTTGATGTTGCTACAGTGTAGCTGGGTTTCTCTGTAGCTGTAACAGGGACCCCATGCTCCATGCCTGTCCATGTGCTTCAAGATCCGGGCACCCGTGATCTGCAGAGGCAACCCCGTGG | |||||||||
gi|29621946|gb|CB626957.1|CB626957 OSIIEb01I22.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb01I22 3', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TCCCAAGATTTTGTGAATTCTTTTGGTGGGAATGTTAATTTTTGTACTTGCAGTTCTGTACGTAGCGTCTACCTTCAACTAGCCTATGTACAAACAAATTCAATCATAGGAGACTAAAGATTATACTCCCTCCGTTTTTTAATAGATGACACCGTTGACTTTTTCTTACATGTTTGACCATTCGTCTTATTCAAAAATTTTATGCAAATTTATAAAATATAAATCACACTTAAAGTACTATGAGTGATAAAACAACTCATAATAAAATAAATTATAATTATGTAAATTTTTTGAATAAGACGAATTGTCAAACATGTACGAAAAAAATCAACGGCGTCATCTATTAAAAAACGGAGGTAGTATTTCCTTTCCAAGTTCATCCTCTGATTTATCTACATCATATGGATGTGGATAAGTGGATTGATGTTGTCCAGGAGTAAATTATATCATCCTGCTTGATCTGACACCCCTTCATCCTAGTCCATGAGTCGGGCAAGCTTTGAAGATGAAGAAGAGGGAGGTTGAAGATGATGGACCTGAAGGCGGAGAAGGAGGTCATCGCTGGAAAAGCTGTGGCGCCGGCGGAGAAGCCAACACCGAATCCGGTGGAGGTGGAGATATATCCATTATACATGTGTCATGTGTATTCGACTTCTGTGCTGCCTGCTCAAGCTGGTATCATCTGTGCTGCTTGATAAATAAATTTGCTTATGGTTAGCACTGGATAGGAAAACTTTCTGTCTATCAGTAATATCAGTCAGGATTCATGATTTTTTTGGCCAAAAAAG | |||||||||
gi|29667061|gb|CB663336.1|CB663336 OSJNEd08C17.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd08C17 3', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TCGGGTAATGATGGAATCTGGCTGTGAGGAGGTGACACTTGAAGCAGAAGTTACGAACAAGGGCGCCCTCGCCTTATATGGTCGTTTGGGTTTCATCCGAGCAAAGAGGCTGTACAGATACTATCTGAATGGCGTCGACGCATTTCGCCTGAAGCTGCTATTTCCTCGCCCTGATCCTGGTATGCATCCAATGATGATGCTAGGCAATGAGAGAGATGACCAGCACATGGATTCTCCTTACTTGTGATACCATTCTGGTCGATTGATAGGATGAGTTAGGATCCAAGGCATTTTGCTCTTTTATGTCAGTTTGATGATGCTTTTGTAGCTTTGCTGTAACTCTTGTAACATTGATGTGTTCAAAGATAGTATCTTATTTGACATGGCATTATGTTTCTTTCAATCCATGTTAGACGGTTGAAAAAGAATGCCTTATTACATACTCCCTCCGTTTCTAAATATTTTACATCATTGACTTTTTAGCATATGTTTGACCATTCGTCTTATTTAAAAACTTTTGTGAAATATGTAAAACTATATGTATACATAAAAGTATATTTAACAATGAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTTAAAAAAATCAACGGCGTCAAATATTTAGAAACGGAGGGAGTATATTTCATTACTTGGCACTAGGAAGAAGAGTAGTTGGGGTATGAATTTGTATACCGTTTCGAATATTTCGATCCATTTCCTAAATTTATGGATTCATTGAT | |||||||||
gi|29614328|gb|CB619341.1|CB619341 OSIIEa03N07.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa03N07 3', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TTTTAAGGATGGTCCTGAGTACGCCAAGGTCGTGACGTTTGGTTTTCTGGGTACTATCGTTCTTGTCGCTTATGCTGGGGTGTTTGCCAAGGCGGCCAACAGCAAGGCCGCGTTGAGGCTGGTGGTTTCTGCAGCTATTGCTGCCATGACATTTGCCGTGGCCTCTCAGCTATCTGGAATAGGGTACATTGTTACCGCTTCACTTACTGGTGCCATCATGGCGGCCTTCATAATGCTGGCAGTATAATTCACGCCCGGCCCCCGCTGCTGTGAACGATGGAGCGGGCGCCGGCCACCTGAGTTCCAGGAGAAAGAAGCAATGGAAACCAATTGTATTTGACTGGGTGATTATGTTGACAAGATTTTTGCTGTGTAGTCCTTTTCAAAATGTCAAAATGTACGACGTCGTTGATTTTTTTTAAACGTTTGACCATTCATCTTATTCAAAAATTTTAGTATAAGTATATAAAAGTATAAGTTAAGATTATATTTTATTTAAAACAAATAAAAAAATAAATAGTATTTTTTTAAAAAAATAAATAAGATAAATAGTCAAACGTTATGAAAAAGTCAACGAAACCATACATTTTGAAATTGAGGAAGTATCACATTTACATACATTTTGAAATTGAGGAAGCAATACTCCGTGGTAAACCTCAGCAATGTGTTGCTGTCCGATCGATCCGTGCCATAAGGGCATGCGAGAACATTTCGCAGACACTGGTTGCATTATCAAATAACTCGAATCATTGGTGT | |||||||||
gi|88245458|gb|CI245307.1|CI245307 CI245307 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGAGAGAAGAAACATGAGACTTCTAGTTATTTCTCTTATAAATATATAGTACAATTTAGTTAAATCTATAATTGGCTAGGGAAATCAATACTATTTTGTTATAAAAAATAACTTACTACGTTAAAACCTTCTTAAAAACTTAGCTAAACTAATAGACCGTATAGAAAAGCTCTTAAATAGGATTAAAGTCGTGCAAAGCGCGATAACGTGGCTAGTTAATTAACATTTTGATTGGCAACCGGAGTCCGGAGAAGCTGATCAAGTGACCTACTCCCTCCATCCCAGAATGTTTGACATCGTTGACTTTTTTTAAAATGTTTGACCGTTCGTCTTATTCAAAATATTTTTTTAAGTAATTATTAATTCTTTTCCTATTATTTGATTTAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGAC | |||||||||
gi|29680667|gb|CB676942.1|CB676942 OSJNEe13H20.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe13H20 3', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TTAAGAGGGTTAAAATTACAGCTGTGCAAGGCGAATTGATTGGGTATGTATAACAGAAAATACTCCCTCCGTTTCAAAATGTTTGACACCGCTGATTTTTTCGTATGTGTTTGATCATTTGTCTTATTCAAAAAATTTAAGTAATTATTTATTATTTTCGTATCATTTGACTCATTGTTAAATATACTTTCATGTGCACATATAGTTTTACATATTTCACAATTTTTTTTTGAATAAGACGAACGGTCAAACATGTGTTAAAAAGTCAAAGGTGTCAAATATTTTGAAACGGAGGGAGTATTCCTATTATATGCAGATGCGGGAGTCGGGAATTCATTCAAGACCCGAGTGGCGGTGTGTGACAATGCAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCGACGGAGAAGAAGATGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGTTCAAGGTGGAGTATGAGCTCGCCGACGGCAGCTTGTTGTCGCCGGAGCAGGAGAAGACGATGGTGGATGGGTATTTTGGCATGGTCAAGATGATGGAGGC | |||||||||
gi|29668309|gb|CB664584.1|CB664584 OSJNEd10G04.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd10G04 5', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GCTTGATGGAGAGGAGCTCTATCTATCCTCTATGGAACAAGCAGCGCGGCTGGCCCTTGATGGCCGCAAGGCTCTGTTGGACAAAATTTAGGGAGCTCGCGAGGCTTATGAACAGGAACTTCTACCTGCGGAGGCAAATGTTTGGAGACGATGTGATTGGTACGGTGAACATAAAGATGGTGGAGGCTGCGAGGAGCGTGGGCGCGGCCGCCAAGTTCACCGGCAGCGGGGGCGCGGTGGTGGCCCTGTGCCCGGACGGCGAAGCGCAGGTGCTGCTCCTGGAGAAGGCGTGCCGGGATGCTGGCTTTCTTGTGCAGCGAATCCAAGTCGCGCCATCACCGCTACCGCTCACGGAGGGTAATCCTCCTTTCTAATCTGTTCTCGACTTCTTGTTTACTCCCTCCTTCCCTAAATGTTTGACGCTGTTGACTTTTTTAAACATTTTTGACCATTCGTCTTATTCAAAATTTTTTATAAAATGTGTAAAACTATATGTATATATAAAAGTATATTTAACAATAAATCAAATGATAGAAAAAGAATTAATAATTACTTAAATTTTTCAAATAAGACGAACGGTCAAACATTTTAAAAAAGGTCAACGGTGTCAAACATTTTGGGATGGAGGGAGTATTTCTCAGCTCTTTTGTTATCATTCATACATTATACATACTCTCTTGCTTTGAATCCTCCATGAAGGCACAGAACTTAATATCCTCTTGTCGAGCCTCTTTTTTCTCCCCAAATCCTGATGACAATAAGTCATCATCTTGCTTTCAA | |||||||||
gi|88520875|gb|CI448529.1|CI448529 CI448529 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GCTAGAATAACTTACACTATGAAATGGAGGAAGTAGTACACAATACTACTATAATATTCCCATCAAATTACAGACTTCGTGAATGACGTTGGCTAGTTCAAAACGTCAAACATTTCATAATGCAAGATAGTATTTTTCCACTCTGCTTAAATCAAATACTAGCTAGTACTCGCTCCCTCCGTTTCTAAATATTTGACACCGTNAACTTTCNAGCACATATTTAACCGTCCGTCTTATTTAAAAACTTTTAAGAAGTATATAAAACTATATGTATATATATAAGTATATTTAACGATGAATCAAATGATAGGAAAAGAATTAATAATCACTTAATTCTCTCTAAATAACAGGAACGGTCAACCATATCTAGAACAATAAACGGTATCGAATATTTACAACTAGATGGAGTATCTCCTAGAC | |||||||||
gi|88460239|gb|CI529314.1|CI529314 CI529314 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): CGACATGCAAAGTCATCGATATTTAGTATATGTTGCTGCTTTGTTCTCTCCACTCATCATATCAATTTATATTTTAAGGTGTAGATCTGATATTAACTTACTATTAATATATAGATCATAGTTACAATCAGTANGGGTTAGGTCAGGATTTGTAGGTAGCCTCCCCTTGAACGAGTATGCCTTTGCAGCAAGTTTCCTCATCATAAAACCTTTTAGCAAGAATGAAGAGCCGCCTCTGCTGTAGTGATGTGGCTCTGCATGAATGCAAGCAGAGTCAGCTGGAGACAGTATTATTATACTCCATCCGTCTCTAATATAAGAGATTTTAACATTTTACTTACAATTTTACTTATATGGTTTGATCATTGGTCTTATTAAAAAAATATTATCATTATTTGGATTCACTTCAATATCCAAAGTATTC | |||||||||
gi|88581471|gb|CI698462.1|CI698462 CI698462 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GGTCTCGCTCGCCTCTGCCACCATGCCGTGTCGTCGTCGTCCCTGACATGATCGATGCATGCCTGCCCCAGCCGCAGGCGCGCACGGCGGCTGGCCGGCCGACCGGCCGTACGTGCCGCCGAGATGTTTCGATCTGGGCATCGATCAGGGACGACGACGAGACGGCGCCTCGCCGTCGTCCCCGGCCCAATAATCCGGCCGACGTCGAGTCGGCAATAATTGGGAAGCACGCACGGAAGCGTCCGTCCGGCCGGCCGCCGGCGATGGCAGGGCAGGCGGCGACAACGGCGGCATATACTACCTTCATAATAGTGCAACTATGAGTTTCTGTATCCAACTTTGAACGTCCGTCTTATTTAAAATCTTTTTATAATTAGTATTTCTATTGTTATGAGATGATAAAACA | |||||||||
gi|66927818|gb|CX114666.1|CX114666 EI090G06 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GCGTTGTCTGTGTTGCTAGCATTTCTTGTGCTCTCTCGTCCAGTGAGTCTGACGCTTTGGGCACACTGACCAAAGGCAGAGCGGAGAGATGCCGGCCGCTCCGTCCAACGGGCGCCTCTTCAGGTTCCTGCCGCCGCACCGCCGTCCGCAGGGCACCGACGTCGCCGCCGCCGCCGGGTGGACCGTCGCCGGCGTCGCCACCGCCGTCTGGCTCGTCCAGCCGTTCGATTGGATCAAGAAGACGTTCCTGCAGAAGCAGGAAGCCGAGGAGGGGAGGACCGAAGCCTGATGAATTCTTGTGCGCAGGCAGCGTAGCGTGTAATCCTTGCAGAAAGCTGGCTGAAAGATGCAGAAATCAATGGAGTTCCATCTGATTTCCAGTGTACGACTAGTAGTTGCTACTGTAGCTGTAGCTGTGTTTGTGTTCATTTCACTCTGTGCGACTTAGAGCAAGTTTAATACTCGCTCCATCCATAAAAGTTTAACACCATCGACTTTTTTAAATATATTTGACCGGTCGTCTTATTACAAAATCTAAGTAATTATTAATTCTTTTCCTATCATTTAACTTATTGTTACATATATTTTCATGTATACATATAAGTTTACATATTTTATATATACCTATACGTATAGTTCAACATATTTCCCAACAGTAAACTAATTTCCCAAAAGTTTAATAAGACAAAGGTCAAACTTTTGAAAAGTCACGGGGTTAACATTTGGGCAGGGGGGGGATAAAACGCCAAAAAC | |||||||||
gi|58665397|gb|CK054083.1|CK054083 63437rsicek_8217.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GCACGAGGCCACGAGATCTCATCGATCAATACCCTGTAAAAAAAATTCAAAATCAAATCTCTCTGCTTGTATAAGAATTAAGAAGCAGATTGGAAGAAAATTGGGCGAATTTTCTCCGATTTTTCAGCTGCTTTTTTGGTCCGTGATGAAACCGGCGACGGCGAGACGCCGGTCAAACACTCGGAACGGGCAACGTGGGCTGCGAATAGAAATCGGCCCATTTAATGTCCGGCCCATGAACGTCCACTTGATGCAGCCTGTTCGACTCGGCTGACCCATGGGCTTGAACGGGGATCTTTTGTGGAATAACCGTCCCTCAACTTTACACCGAGTTTGTGTGACATCCCTTATCCTCAATACCAGAAATCTTCACCCCTAAAATATACTCCCTCCGTTTTAAAATATTTAATACCGTTGACTTTTTAGTATGTGTTTGACCATTCATCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA | |||||||||
gi|218479431|gb|FG947177.1|FG947177 MA_93-11_04072 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): ATTCCGTTTGTATAATTGTATTTCCATATAGCTAGACCCTTGTCTCAATTATTTGTTTCTTTTCATGTGTGAACATTCTTTAATACTCTATTCTTCTTTAGATGTTTGACGCCGTTGACTTTTTTAAACATGTTTAACCATTCGTCTTATTCAAAAAATTTTATGAAATATGTAAAACTA | |||||||||
gi|88567758|gb|CI498475.1|CI498475 CI498475 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): ACCTAATCTTTTATACTACCTCCGTTTCAAAATGTTTGAAACCGTTGATTTTTTAGTACATGTTTGACCATTCATCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATCGTTAAATATACTTTTATGTACACATATAGTTTCACATATTTCACAATTTTTTTTTAATAAGAAAAACGGTCAAACATGTGCTAAAAAGTCAACGGGGTCAAATATTTTTAAACGGAGGGAGTACTTACTATTACAGTTGAAGTTGGCTAAGGGGT | |||||||||
gi|88526048|gb|CI453091.1|CI453091 CI453091 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GGCAAGCAGCAGCTTGTTAATGCCAACCAGTCAACCGATTACACAGAGAACGTACGGCTTGATTTACAGGAGGTTGCAGATTATAGCATTCTGTCTTGTTGATCAACAGATAGGACTCATACGGAAACAACATTGTAATCCTGCGATGTTTTCTGCATACTTGAATACTCTCTCCGTCCCATTATAAGTACAACCATAAGTATCCGCGCCCAATTTTGATCGTTCGTCTTATTTAAAATTTTTTTATAATTAGTATTTTGGTTGTTATGAGATGATAAAACATAAATAGTACTTTACTCGTGACTTATGTTTTTAAATTTTTTCAAAAAAATTTTAAATAAGAGGGATGGTCAAAGTTGAACGCGGAAAAACATGCTGCACTTATAATAGAACGGAGGTAGTACTATGTA | |||||||||
gi|88718207|gb|CI741717.1|CI741717 CI741717 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GCAGGCGGGAATTAATGGCACCATTGTTTGGTTTATACATGAATAAACAAAATAACATACTCCCTCCGTTCCAAAATAAATACGGTTTTACACTATTCACGTTTACCGTTTGTCTTATTTAAATTTTTTCTATGATTAGTATTTTTATTGCTATTAGATGATAAAATATGAATAGTATTTTATGTTTGACTAAATATTTTTAAATTTTTCATAAATTTTTTAAATAAGACGGACGGTCAAATGTTGGGCACGGATATTCACGGCTGCACTTATTTCGGGACGGAGGTAGTATTCACAAAAGAAAATTAAAAATAATTTATGAATAAACATTCTACGTATTGTTCTTAAG | |||||||||
gi|58691938|gb|CK080625.1|CK080625 84290rsicen_21774.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indi TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGAAATTAATTACCACAGTCACCTAGAGAGGTGCGTTAGTGCTGTACTTTCTCAGTTTCATGTTCTTGTATCCATCCATCCTTATGTCTACCTTGCTACTCTCTCCGGTTTTAATAAATGATACCGTTGACTTTTGGACATAGGGTTGACTATTTGTCTTACTAAAAAAGAACCATTCGTTTTATTGTGACTTGGTTTATAATCAAAGCTACTTATTGTGACTTACATTTTTCATATCTGCACGAATTTTTAGACTAAGATGAATGGTCAAACATGCATATACAATTAAACACATCTATTAAAAACTGAAGGTAGTATGAATTATTTTGGTGCCCTCAGATTTTCTTTTATAAATACCATTTCACTTAATTAGCTATATCATACTGAAAGGAAAAAAAATCAAGTAATTGGTCTTCTCATATTTCCTTATAGGTACTTAATTGTCATTGATGATATATGGGATATATCTGCCTGGGAAAAGATCAAGTGTTCTTTTGTTGATAGTGAAAATGGAAGTGGAATAATCACAACAACTCGCAATGTTGATGTTGCAAAAGAAGTTGGTG | |||||||||
gi|117249237|gb|CT863005.1|CT863005 CT863005 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): AACTAGCCAAGCCAATCGGTCCCCACGCTTACAAGCTACAACTTCACCTCACCCCTGCTGCATTCTCGCGTCCCAAGTTACAATCCATCAATGGCGGCTTCCACTTCCGCCGCGGTTAAGATGGCCGCCGCCGTCCTCTGCCTGATGGTCGCCCTCTCCGTCGCCGCCGGGCAGCTCACGACGACGGCCGCCGCCGCCACCTCCACGCGCGTGGATGATCACGTCGTCGAGGACGACGACGACGCGACGCCGACGACGCTGCAGCAGCTGGAGACGCGCCTCGCCGACGATCAGGACCTCGCCGACCTCCTCGACGGCGGCGACGGCGCCGCCACCATCTGCCCCAGCAACTGCCAGAAGTGCCTGGTCAAGTGCGCGGGCACCTGCGTCGCCGACATCGTCAGCCCGCCCACCTTCGTCGCCTGCTTCCTCAAGTGCGCCGTCGTCAAGCTCTGCTTCGCCAAGGTTTGATCATCATCGCGTCGGCGGCCGGCCGGCGATGGTCGACGGCGGCGCCGGTGCCGCTTGATTGCTTGCCTTGTTGTCTTGCTAGCTCGTGTCTACGTACTCCCTCCGTACCTATATATTTAACACCGTTATTTTTTTAATATATTTGACAGTTTATCTTATTAAAAAAATAAAAAAAATTCTTATTATTAAATATGTTTTATTATATATATAGTTTTATATATTTAAAAAAAATTAAATAAAATAAACGATTAAATATATTTAAATAAATTAGCGGCGTTAAATATTTAAAAACGGATGGAGTAGTCGAGGTCGCCATGCGTGCACTCCTGCA | |||||||||
gi|88338187|gb|CI677185.1|CI677185 CI677185 Oryza sativa (japonica cultivar-group) young ear Oryza sativa Japonica Group cDNA cl TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GAGAAGATACCTTCGATGATCTCCCGCTTCAGGGAATTCCATGAGGAGTTCATGTCACAGTATCGCGACTGATGGACTGAACTCATAAGGCTTCGCCATCCAGAAGACGAGAAATAAAGCAAAACGCCGTTAATCTGCGATGTGTTAACGGAAGATGTGCAGCAACCTTAATCTGGAAAACTTGAGCATACTCAGTTTGGGTCGTAAAGAATTCACGGGCTGTTGCATCAGTGTTTGCCCGGTACAAGGTTTGATTGGATTAGCACGATGAATGAGTGCAGGGAGACCTGCAGCTAAATAAATACTCCCTCCGTCCTATAATATAAAGTATTTTGAATTTTTGATTGCAACGTTTGACCGCTCGTCTTATTAAAAAAATTTAAAATTATTATTTATTTTATTAGTGACTTACTTTATTATCTACATCACT | |||||||||
gi|29640043|gb|CB645052.1|CB645052 OSJNEb06I11.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb06I11 5', mRNA sequence TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): GAGNATTGTTCTTCTTCTCTAGCTATTAGTGGTGGGGAATAATGGCTCCCGCCACCACCGCAGCAATGGCCCTCGCGCCGCCTCCTTCCCATCACCATCACCATCACCATGTCAAGCAGCTGCAGCTCCCTCCGTCTGTCTCCGTCTCCGTGCCCCTCCGCTCCGGTTTCCTTGGCCGCGCACTGCCTGCTGCTGCCCACCCACAGCCGCTGCTCGCCGCCGAGAGCCGCCGCAGCAGCGCCGTGTCCGTGCGGATGTCGTGGGACGGGCCCCTCTCCTCGGTCCGCCTCATTATGCAGGGCCGCAACGTCAAGGTTCTCCTCTCCTACTGCTACCACTAGTTTGCTTCCCTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATGATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTATATATAATTCGGTAATGGAACTAGAGTATTTGTTTTATTAATTGGACCTTTATGAAATACTAGTAGAATTCAACGAAACTACATTCTTCTTTATTGGTTATATTAGTAGTAATTTGCTTCACTAGAATTCTATTTTATACTAGAGAGATTAAAAATTATTACAAAACTAACTGTATACCCGTTGCAACGGAATAGTAATATGGACCTATTACTTATTACTACCTCCATATTTTAATGTATGACGCCGTTCACTTTTTGTCCAAGTTTGACCATTCGTCTTATTAAAAAAAATTATGGATCTATTATTTATTTTATTATGACTTG | |||||||||
gi|88728693|gb|CI752203.1|CI752203 CI752203 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TTTTAATAAGACGAACGGTCA EST sequence (targeted fragment marked with yellow): TTTCATTTTTATTTTTTATTTTTACTGAAGGACTCAACGGTGACATGTTCAGAGTTCAGATTACAATGATGGAAAAGAAGGAATAACTAATCTGTTTCCTGTCTTTGTCAATTAGCATGCACTAATGTTCAGTCTATAAATTTCAGAGACTTCATATAGAAAAACTAAAAAATCCCTCCGTATACGAATATACTACCTCCATCCTAAAATATAAATATTTGATGCCGTTGACTTTTTTAAAAATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTGTTAATTCTTTTTCTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAGTTTTACACATATCACAAAAGTTTCTAAATAAAATGAAC | |||||||||
gi|88583923|gb|CI700423.1|CI700423 CI700423 Oryza sativa (japonica cultivar-group) 2nd week immature panicle Oryza sativa Japoni TTTTAATAAGACGAACGGTCA |