| mature miRNA: ATTTGGGACGGAGGGAGTATA species: Panax ginseng database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78210610|gb|DV556402.1|DV556402 DC05033G12 Panax ginseng cDNA library Panax ginseng cDNA, mRNA sequence ATTTGGGACGGAGGGAGTATA EST sequence (targeted fragment marked with yellow): CTTCCCCCGAATATTGGTTTTTTAACCCACTTCCCATGTGTTGGTACCCGGGAATTCGGCCATTACGGCCGGTTGGATTTTTTGTAGATAATTAGAAGACCTGCACCACCAAGGCACTTAATAACTACGACATGTCTTAAGGTTATACTCCAACAAAAAAACAAAAGCTAATGGGGGGATCCCACAGACACTTCCTTCTGCCAAAAGAATAGCAAACTCAATAATAAATACTCCCTCCGTTCCAAATATAAGATCAAATTTGACTTTTCAAAGTCAACTTTAATATTTTCAAATTCAGAATTGTTTGTTTAAATCTTGAAAACAATAAATCTTGTAGTTAGTAGTATTATTAAGATAGTTAACAATTTTCATAATTGTATTGTCTAAAACTAAATTAATTCATATCAATTTAAAATTTAAAATTTAAAAATATCTCAAGTTGATTTTAAAAACCCAATATTGATCCTATATTATGTAACAAAGAGGGTATTTGATTTGTACAATAGATGTCTGCCTAGCCTCAAAATATCTGCAGTTTCTTCCCTCCAGAGCACCCACCAAAGGCAATGAGGATTTATATCCCAGTTAGAATGAATTCTCTTATGGACTCTAGCACCTTTTCAAGCACACAAAATATCCTTGACCGTTGCTTAAAGCCTCCCCCCCTCNCACTTAATAATTAGGTGTAAATAATCGTAAAAAAGATAGAAATTAAATTTATTGACAATTCCTCTTCTTCCTACTTTTCTTCCCTCCCCCACTCCGCG | |||||||||
gi|78209789|gb|DV555581.1|DV555581 DC05025C07 Panax ginseng cDNA library Panax ginseng cDNA, mRNA sequence ATTTGGGACGGAGGGAGTATA EST sequence (targeted fragment marked with yellow): CTTTTGTGGTTTTTCTCGCGAAGCGTCGCCATTGTGTTGGTACCCGGGAATTCGGCCATTACGGCCGGGGGGATAAGGTTTTCATCAGTGAGGACTGAGGGGATGACTTCTTCTTCTTCTTTAGCTTCTCTATCCATTCTTCCAAGGGCTTCATTGGCGTATTCCCAACAGCAGCAGCAGCAGCAGCAGCTTTTCTTCCTCCATCCCAAATTGGTGTCCATAAGGCCGAAATACTACCAGTCTCTAATTGTTGAAGCCAAGGCCAGAACCAGGCAAGACAACCGAATCGCTCGCCATTCTCGTCTCCGCAAAAAGGTTGAAGGGACTCCAGAAAGACCAAGGTTGTGTGTGTTTCGCTCCAATAAGCATCTCTATGTTCAGGTGATTGATGATACCAAAATGCATACTCTGGCTTCGGCTTCAACGATGCAGAAACCGATCTCCGAGGAGTTCGACTTCAGTTCTGGTCCTACAATTGATGTAGCAAAGAAAGTGGGCGAAGCAATCGCAAAGTCCTGTCTTGAGAAAGGGATCAACAAAGTGGCCTTTGATCGAGGTGGATACCCTTACCATGGACGCATTGAAGCCCTTGCTGATGCTGCTCGGGAACATGGCCTTCAATTTTAAAACTTGGGTTGGGTGGTTAATTTTTCTTACTCTTTCTCTTTCCGTTCTATCTTCCATTAATTTGGTTAAAACTTTGTACGGTGGCAAATGTGGATGAATGTTAAATGTCTGATCTGAAAAANNAAAANNNANNNAAAANNCCCATGTCGGCCCGCTCG | |||||||||
gi|78208845|gb|DV554637.1|DV554637 DC05015D03 Panax ginseng cDNA library Panax ginseng cDNA, mRNA sequence ATTTGGGACGGAGGGAGTATA EST sequence (targeted fragment marked with yellow): TTATGTTGGTTTTACAGGCAAAGCTCGCCATTGGTGTTGGTACCCCGGGAAATTCGGCCATTACGGCCGGGGATCCATTTTAACATTCATCTGTCATTTTTTATACCCATTTTAATCTCTCTATTTTTCTCCGGAACCCATATTTTTTTAGCTCTCTAAATTCCTCATCAACAAGAAATAAGAAGAAACATGGCGGAATCTAACACCAAGACCTCGCTTGAATCCATGAGGGAGTGGGTCGTTGAGCACAAGCTTCGCGCCGTTGGGTCTCTATGGTTAACTAGTATTGCGGGATCAATCGCTTACAATTGGTCTCAACCAGCTATGAAGACTAGTGTCAAAATCATTCATGCTAGGTTGCACGCCCAGGCTCTGACACTAGCTGCACTAGCCGGAGCTGCTGTGGTTGAGTACTACGACCACAAAACAGGAGTGAAGGCAGAACGATATGCGAAATTTCTCCCTCCAATGGATACTTACTCGCACAAGGATTGAATAAATCTCCTGGTTCAACGTATATCTGTCGGTTGTTCCCTATAATCATTAGTAATAGTGCACAGATGTCTTGATGATTTACATTATTTGTGCTATATCTTTTCCTCCATGGATGTAATAAATTTAAATTACAATGACAAAATCCACTTTTGGTAGTTTACTATTTCTAAATAAATGCTACTCCCTCCGTCCCAAATTAATTGCTCAGTTTTGACCTTNTAAAGTCAAATTGACCATT | |||||||||
gi|78207954|gb|DV553746.1|DV553746 DC05006A12 Panax ginseng cDNA library Panax ginseng cDNA, mRNA sequence ATTTGGGACGGAGGGAGTATA EST sequence (targeted fragment marked with yellow): GTTTTGTGGTTTTTCTCGCGAAGCTCGCCATTGTGTATGGTACCCCGGNGAATTCGGCCATTACGGCCGGGGGATAAGGTTTTCATCAGTGAGGACTGAGGGGATGTCTTCTTCTTTAGCTTCTCTATCCATTCTTCCAAGGGCTTCATTGGCGTATTCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTTTCTTCCTCCATCCCAAATTGGTGTCCATAAGGCCGAAATACCACCAGTCTCTAATTGTTGAAGCTAAGGCCAGAACCAGGCAAGACAACCGAATCGCTCGCCATTCTCGTCTCCGCAAAAAGGTTGAAGGGACTCCAGAAAGACCAAGGTTGTGTGTGTTTCGCTCCAACAAGCATCTCTATGTTCAGGTGATTGATGATACCAAAATGCATACTCTGGCTTCGGCTTCAACGATGCAGAAACCGATCTCCGAGGAGTTCGACTTCAGTTCTGGTCCTACAATTGATGTAGCAAAGAAAGTGGGCGAAGCAATCGCAAAGTCCTGTCTTGAGAAAGGGATCAACAAAGTGGCCTTTGATCGAGGTGGATACCCTTACCATGGACGCATTGAAGCCCTTGCTGATGCTGCTCGGGAACATGGCCTTCAATTTTAAAACTTGGGTTGGGCGGGTAATTTTTCTTACTCTTTCTGGTTCCCGTCTTTCTTCCATTAATTTGGTTAAAACTTTGTACGGAGGCAAATGTGGATGAATGTTAAATGCCTGATCTGGTTTACAAAAAAAAAAA | |||||||||