| mature miRNA: AAAGTTCGAGAAGTTTGACTT species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198049380|gb|FL779560.1|FL779560 CCGF10194.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga AAAGTTCGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): CCATCGACCGCATCGACAAGACGCCCAGCCGGTGGAAGAAGGCCGACGTGCTCGTCTCAACACCGGCCACTGGTGGACGCACGGCAAGACGGCGAGGGGGAAGAACTACTACAAAGAAGGCGACACGCTGTACCCCCAATTCGACTCGACGGAGGCCTACAGGAGAGCGCTCAGGACATGGGCTCGCTGGATCGACAAGAACATGGACCCGACGGCAAGCGTCGTCTTCTACCGAGGATACTCCACCGCGCATTTCAGGGGAGGCGACTGGGACTCCGGCGGCTCGTGCAACGGCGAGACGGAGCCGGCGTTCGGAGGCGCCATCATCGACAGCTACCCTCCGAAGATGAGGATCGTGGAGAAGGCCATCGGCGGGATGCGGTTCCCGGTGCGGCTGCTGAACGTGACGAGGCTGACCAACTTCCGCAGGGACGGGCACCCGTCGGTGTACGGCAAGGCGGGGGACAGGAAGAAGGTGTCCAGGAGGAAGCAGGACTGCAGCCACTGGTGCCTCCCCGGCGTGCCGGACGCGTGGAACGAGCTCATCTACGCCTCCCTTGTCTTGGAACCCAACCCGATCACATGGAAGTACAGATGAGAGATTCGGAGCAAGCAATTTCTTTTGAAAGGACATGTCAGTTTATCTCGAGCTGGCAAGACTTGTTAACGACGAAGATCATTTTAATTTTATTTTTGTCATAAGTTAAATTTCTCTAACTTTTATCAAATTTATAGAGAAAATATATTGTCCCCGTGGATCTAATTAAATTGATTTGGTGTTTGT | |||||||||
gi|198347083|gb|GD015681.1|GD015681 CCHZ6495.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum AAAGTTCGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): AATCGCAATGGCCCCCAGGTCAATCGCCTAGGATTCGGCCTGATGGGACTATCCTTGTCTTATGGACCACCAAAACCAGACAATGAGCGCCTAGCTCTCCTCGATCGTGCTTACGAACTAGGAGAACGTTTCTGGGACAGTTCTGACTTGTACGGTGATAACGAAGACCTGCTCGGAAAATGGTTCAAAGCCAACCCATCCAAGCGCGCAGACATATTCCTTGCCACAAAATTCGCCATCAAGGATGGAGGCGCCGGCGGAATTGATTCTTCCCCAGAATACGTCAAGGTTGCCATTGAGAAATCACTGGAGCGCCTCGGTACTCCATACGTCGACCTCTACTACTGTCACCGCGTGGACCAGAAGACACCCATTGAACTTACCGTAAAGGCCATGGCCGAGCTTGTCAAGTCCGGAAAAGTAAAGTATCTCGGACTTTCCGAAGTCAGCTCAGACACCTTGAGAAGGGCACACAAAGTCCATCCAATCGCTGCCGTGCAAGTCGAGTACTCGCCCTTTGCACTGGAGATCGAAACCAAGCAGATCGATGTCCTCAGGACGTGCCGCGAGCTGGGCATCGCCGTTGTTGCATACTCGCCACTAAACCGCGGAATGTTGACTGGAGCTATCAGAGCCCCGATGATTTCGACGAGACTGACTTCGCGC | |||||||||
gi|197951625|gb|FL693053.1|FL693053 CCGA3033.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA3033 5', m AAAGTTCGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): GACAGTAGGAATTGTAGATGGAGAAGAGGAATTGCCCTCCATCACCATCACCAAGGTCGACTGAGAAGTCCGGAAGAGAATTGAGATCCGGGGAGGCCAATGGCAGCGCAAATACTAATGCTAACACCATCCCGAAAGGTGATAAGGAGAAGGGTGTCAATGTGCATGTCATCCTTAGATGCAGGCCCTTGAGTGATGAAGAGACCAAGTCAAATACTCCAGTGGTGATTTCGTGCAATGAGCGCCGTCGGGAGGTTGCTGCCACTCAAATTATCGCCAATAAGCAGATTGATCGAACATTTGCCTTCGATAAGGTCTTTGGGCCATCATCCAGACAGAAAGATTTATTTGAACAATCCATCTCACCAATAGTAAATGAGGTCCTTGAGGGCTATAATTGCACTATTTTTGCTTATGGACAAACTGGTACCGGGAAAACATACACAATGGAGGGAGGTGGAACAAGAAAGGTCAAGAATGGTGAACTTCCAACTGATGCTGGAGTTATCCCAAGGGCTGTAAGACAAATCTTTGACATTCTTGAGGCTCAATGCGCAGAGTACAGCATGAAAGTCACCTTTCTTGAGCTTTACAATGAAGAAATCACTGATTTGTTGGCACCTGAGGAACCGAAATTCCCTATCCCTGAGGACAAGACGAAAAAACCTATTGCCCTTATGGAAGATGGCAAGGGGTTTGTTTTTGTGAGAGGACTTGAAGAAGAAGTTGTGTACTCTGCTGGCGAGATCTACAAGATTCTTGACAAGGGCTCTGCAAAGAGGCGCACTGCAGAGACATTGCTGAACAAGCAAAGCAGTAGGTCGCA | |||||||||
gi|304502738|gb|HO303676.1|HO303676 CFCB2820.b1 CFCB Panicum virgatum WS4U normalized leaf Panicum virgatum cDNA clone CFCB2820 AAAGTTCGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): GAAATTCGGAAACACACGCAACTACTGGTGTGGCAGGTACTTTTGGATATGTTGCTCCAGAGTATGCAATGACGTGCCGTGTTTCTGATAAGGCAGATGTGTATAGCTATGGAGTCGTACTTCTTGAACTTATTTCAGACAAAAAGGCACTAGATCCTTCTTTCTCTCCATACGGGAATGGATTCAACATAGTTGCCTGGGCTTGCATGCTTCTACAGAAGGGCCGAGCTCGTGAGTTCTTCATAGAAGGGCTGTGGGATGTGGCTCCGCATGATGACCTTGTTGAGATTCTACACCTGGGTATCAAGTGTACAGTTGATTCTCTTTCTTCTAGGCCCACAATGAAGCAAGTTGTCCGACGACTAAAGGAACTCAGACCGCCATCTTACTAGTAACAGCAAGCAGAGATTGGCTTCCTTCTGTAAATTAAGAGCAAGGCTGTTGGCTGTTCTGGTGACTTGAACTACCAGTAATGTTCAAATGCCATCTCTCATGGGGCCCTCAAGCAGGACATTCAAGCTGGTGGCAAACAATTCAAATGCCATCTCTCAAGGGCCCTCAAGCGGGACATTCATGGTATTTAAATGTGGCCTTGGATGCCACCTTATGGGACACTGCTATTCCTTCAATGCCACTGCCAGCGAGAGGAAGTTCTGCCATGCCTGCCAAATATATGAGGCATTACCCAGTTAACAGGATGCATTTATATACCTT | |||||||||
gi|198095523|gb|FL817941.1|FL817941 CCGG15926.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat AAAGTTCGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): AGCTATTCAAAAATAATAGACATAACTACAAGCAATCAAATATTATGAAAATAAAAAAATAGATCTGAATAACTGAAAAATATCATGCCAATAGATAAATTACATTTTTAGAAAAAAATTGATACCCATTTTTTATTTTTTTATTTAAAATGAGTTACTTATGAGTTTAAATTTAAATATTTTTAATTCTTACAAAATAGAAAACCACCTTCAAAACCATGTAAGAGGCCAAATTTATCCGGTTTCAACAGGTGGATGACCTTTGTTATCCGGTTTTATAGTTCAAAGTTGAAAATTGGGCTTTTGTGATAGTTGGAGGGGTAAACTGGGCTTCTCCCGTTAATAAAATTCAAATGTGGCAACTGGCAAGTAGAAGCCAATAGCCTGTGCTAGGTAGACAGCTCCTTTATTTCATTTTTACGGCATTCAGCTGATATGCATAATGCATATGTTACTCTGGTATAAAAAAATGCAGGAAAGTTTGGCACATCCACGTTCCACTAGCAATGTTGATCAACACACCAGGTAAAAACTCAACAATTTGACTCTCAACTGTAATCCCTCCATTTTCAAAATGTATGGTGTTTTACTGTTGTCCGAAGTCAAATTTCTCTAACTTTAAATAAATGTGTATAAAAATACACTAGAATTATACTATCAGATACATACATTATCAATGTATGTTTTGTCACTTGATAAGTTTGTTGTAAACTCATGCGATCCGTCATGGCATACACTTTACCTTTATCATCAAACTTTCTTAA | |||||||||