| mature miRNA: AGAGAGTGAGCACACATGGTG species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|197975014|gb|FL721099.1|FL721099 CCGB5773.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB5773 5', m AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): GGCCTGCAATCCATGTGAGTCTGGAATGGAAAAAGGATTGGTTTTACATTGGAAGTCCATATCCCTCTCTGCCCAAGTTCTCTGCTGAGCCTCCTGTGTATTTTCACGAGTGGATTCTGAAGAATGGTCCTGGCAGTGAGGATCAAGTAGAAGAATTATTGGGTTTCACATTCTGTTTGCGTGAGATAAGAGTAACTGCAACATCTGTCCAGTTCAATTGGGTTATGCGTAGGGTTTAACCTTTGCAGAAGCGCAGGAATTTTGGTTTTCAGTATGAAGGAACTGAAGATAGTTCCCGATTCTCTGTAGAGTCAATGGAGCGGACACAAGGGTTGAGGGTAATTAGAAGTATATTTCTTGATCAACTCAGCCATATGTGCTCACTGTCTTTCATGCGAGTAATCCACCTTCTCAGGCGGATGTGGAGGTTTTCAAAAGCGATCCTCCTATCCCCAGTTCTGTTGAGGCAAAGAACTAGAAAATCTTCCATACACCTGTGGTCTTCAATATTGATGAATCAATAATTGAAGAAGATCCAATATCGTCATCTGATTCTGAGGGAGATAATCCATCAGTAGATCCAAGGCCTGTTGATAGAAGATTAGAAGAAGTAGGCCGTTGTGCGAGTGGATCCATGGGTACTAGTAGTACCTCCACACATACTACAAGCTCAGCAGCCCCCACGACTGGTACTGGTCCAGTGCATAAAGTTCTGTGAGTACCATCAAAGCTCATTGTGAAGAGAGCAAAAACCCGCCGAGCAGACG | |||||||||
gi|198082633|gb|FL808861.1|FL808861 CCGG10939.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): CAAGATTTTCCTGGGAATGCCGCATCTGTTGCAAACCCAGAAATTGCTACCTCCGTGGGTGCTCACTCTTTGCATGTGCCAAGTGGAGTGCAGTCATTGAAGACAGAAGATGTTCCCTCTTCGTCAACATCACCACCCGCAAACAATAATCCTGTTCTTTTGCAATCGCTTCCATGTAGCTCGAAGAACCAAAGTTTACTTGCTGTAGCGAAGACACCTCAATCATCTGCTATAGCGGGCCCTACACTTGAACAAGGGCATGAAGCCTTATGAGAGTACACAGCAAATGGTGATGATTCCCAAGATGGCTGAACAAAAGCCAGGTACCAGGCAAGACTATGGTGAACAACACTCGGATGGGATTATCTG | |||||||||
gi|198213492|gb|FL926198.1|FL926198 CCGP2015.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP2015 3', mRNA seq AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): GTGCCCATGAACGCCGCATGAATCCGCTCGTCATCGTCACCTGCAGGCTGCAGCAGCTCACCGCAGCCATATTCCTCGCGCCAATAGCATTCTTCAAGAGAGTTTTTTTTTACTGTCGTTACAATTAATAAGTTCAATCGATCAAAACGGCAGCACGTCGTCATCTGATCTATGTATATTCTGTAATTCGATGAGCAGGAAGTCGAGGCCAAAGCTGACGCTGGAGATCTTCGCCTACATCTTCATCAGTGCGGCGCTCGGGGCAGCTCTGCGGCAGTACATGATCTTCGTCGCTCTGCGCTACACCACGGCCACCTTCGTCACCGCCTTCTCCAACATCGCCCCCGTCCTCACCTTCCTGCTCGCCGTCGCCACGCGCTCCGAAGCTCTGAACCTGAAGAGCAGGCCGGGCATGGCGAAGCTCCTGGGAACGCTGGTCTCGCTGGCGCCGCGCCATGGTGCTCACCCTCTACACCCGGCGTCGCGCTCACCCACGCCGCCGCCGCCGACCCGTCGTCGCAATTCCACTCCCAGTCCCACGCCGCCTCCGCCGCCGTCAGCCGCGGCAAGTGGACGCTGGGCACCGTTGCCATCCTGGGGAACTGCGTCTGCCTCTCCTGCTGGTTCCTGCTCCACGGCCGCCTCGCCAAAAAGTGAGGGACGGAAGCCGGGACTAGATGGGAGTGAACGAGAGCCGATTAAATTTTTTTCAG | |||||||||
gi|198051889|gb|FL779281.1|FL779281 CCGF10049.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): GGTACTGGTAGGTAGGTAGCTGCACATAGATACGTATACCGGCCGGCCGGGGCCATGGGGACGATGATGGGGGCGTGCCTCGGCGGCGGCCTGCCGGTGGCCGTGATGCTCTGCCTCAACGTGGTGGCGGCGGTCATGGTGTCGCTCGTCAAGGTGGCCATGGACGGCGGCATGAACCCGCTTGTGATCGTCACGCTGCAGCAGCTCACGGCCTCCGTCTTCCTCGCACCAATAGCCTTCTTCAAAGAGAGGAAGTCGAGGCCAAAGCTGACGCTGGAGATCTTCGCCTACATCTTCGTCAGTGCGGCGCTCGGGGCAGCTCTTCGGCAGTACATGATCTTCGTCGCCCTGCGCTACACCACCGCCACCTTCGTCACCGCCTTCTCTAACATCGCCCCCGTCCTCACCTTCCTCCTCGCCGTCGCAACACGATCAGAAGCACTGAACCTCAAGTCCAAGACGGGCATGGCGAAGCTCCTGGGCACGCTGGTCTCCCTGGGCGGCGCCATGGTGCTCACCCTCTACAAGGGCGTCGCCCTCACCCACGCGGCGGCTTCGCAGCAGCAGCCCCTCCATTCTCA | |||||||||
gi|304468402|gb|HO263944.1|HO263944 CCTY2324.b1 CCTY Panicum virgatum Kanlow normalized leaf Panicum virgatum cDNA clone CCTY232 AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): AATTAATTATTGGTTGATGAATGATTGATTGATGAAGTTATTGTTGCAGGGCAGCTCTGCGGCAGTACATGATCTTCGTCGCCCTGCGCTACACCACCGCCACCTTCGTCACCGCCTTCTCCAACATCGCCCCCGTCCTCACCTTCCTGCTCGCCGTCGCAACACGCTCAGAAGCACTGAACCTCAAGTCCAAGACGGGCATGGCGAAGCTCCTGGGCACTCTCGTCTCCCTGGGCGGCGCCATGGTGCTCACCCTCTACAAGGGCGCCGCCCTCACCCACGCGGCTTCTTCGCTCCATTCTTCTCACCGGCTGCCGCACGGGGCCGGGGGATCGCGCGGCAAGTGGACGCTGGGCACCGTGGCCATCCTGGGCAACTGCGTCTGCCTCTCCTGCTGGTTCCTCCTCCACGGCCGCCTCGCCAAAAAGTACCCGCACGTCTACTCGTGCAACGCCCTCATGTCCATGCTCAGCTTCCTCCAGGTCGCCGTCGTCGGCCTCTGCACCCAGCGGAGCATCTCGCCGTGGCTCATCAGCAGCAAGTTCCAGATCCTCACCGTCCTATACGCGGGCATCGTCGGCTGCGGCGTGTCGTTCGTGCTGGTGACATGGTGCATCGACAGAGGGGGGCCGTCTTCGTGGCCGCCTTCATCCCCGTCGTGCAGATCATCGTCTCCGTCATCGACTTCTCCATCCTGCACGAGCAGCTCTACCTCGGCAGCGTGCTCGGATCAGTGCTTGTGATCGGCGGCCTGTACCTTCTGATCTGGGGCAGA | |||||||||
gi|198011016|gb|FL751247.1|FL751247 CCGC4598.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): CTCAGAAGGTAGTTCAAGATTGCAATCCTGAACAGAAGCAGCATGCGATAACTCAACCAGTGCAAGGCAACCAACCAACGAAAAGTGTTGCACAGCCTCAATTTGTTGTCCAGAACCAGCTCCAGCAACCTCAAGTCATTCTCCAGGCCCAGCCTCAGCAACCTCAAGTCATTGTCCAGGCTCAAATCCAGCAACAACAACATTTGGTTCAAAATCACACAATTCTTCAAAGTGGTACTCAACGAATCCACCTTCTGCAGCAACAGCAACCACATTTGCAGCAGCAGCCACAACAGGTTCAGCAGTCAGTGCAGGAACAGCAGCAAATAAAGATCCAACCTATTCAGGTACCCAATGATATGAACATGATCACACAGCTATCTGATCATCAAATGAAAATTCAACTATTGAAGGCTCTGCAGCCTCAGCAGCCTTTGATAATGGAGCAGCAGAAAATGTTCATGGACTTGCAGCATCAAACTGTAAATTCCAATTCCCAGTCATCTGCTCAGCAATGTGCACAAGTAGCTACCCAAGTGGGTGGTATGCATAACAGCAACACTATTCAGTACCCAACACAGCAAAGACTCAACCTCACCAACCAATTCAAGATTTTCCTGGGAATGCCGCATCTGTTGCAAACCCAGAAATTGCTACCTCCGTGGGTGCTCGCTCTTTGCATGTGCCAAGTGGAGTGCAGTCATTGAAGACAGAAGATGTTCCCTCTTCGTCAACATCACACCCGCAACATAATCCTGTCTTTTGCATCGCTTCCATGTAGCTCGAA | |||||||||
gi|198365834|gb|GD029011.1|GD029011 CCHZ14483.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): GGCCACCTTCGTCACCGCCTTCTCCAACATCGCCCCCGTCCTCACCTTCCTGCTCGCCGTCGCAACACGCTCAGAAGCACTGAACCTCAAGTCCAAGACGGGCATGGCGAAGCTCCTGGGCACGCTCGTCTCCCTGGGCGGCGCCATGGTGCTCACCCTCTACAAGGGCGCCGCCCTCACCCACGCGGCTTCTTCGCTCCATTCTTCTCACCGGCTGCCGCACGGGGCCGGGGGATCGCGCGGCAAGTGGACGCTGGGCACCGTGGCCATCCTGGGCAACTGCGTCTGCCTCTCCTGCTGGTTCCTCCTCCACGGCCGCCTCGCCAAAAAGTACCCGCACGTCTACTCGTGCAACGCCCTCATGTCCATGCTCAGCTTCCTCCAGGTCGCCGTCGTCGGCCTCTGCACCCAGCGGAGCATCTCGCCGTGGCTCATCAGCAGCAAGTTCCAGATCCTCACCGTCCTATACGCGGTTCTCAGTGACTGTTTCTTGTCTTGATTCATTCAGTAATCGATCAGTAGTCTCGTTGTCGTCGTCAGTGCGTGCGTGCCTGCCCTGACCGGCCACTCACTAGATCGATCTCAAGTACTCTCAACTAACTTGTCGTCAGGGCATCGTCGGCTGCGGCGTGTCGTTCGTGCTGGTGACATGGTGCATCGACAAGAGGGGGGCCGTCTTCGTGGCCGCCTTCATCCCCGTCGTGCAGATCATCGTCTCGTCATCGACTTCTCATCCTGCACGAGCAGCTCTACCTCGGCAGCGTGCTCGGATCAGTGCTTGTGAT | |||||||||
gi|198089223|gb|FL816024.1|FL816024 CCGG14871.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): GCCCTCTGAATTAGCTTTCCATAGAGTCTAAGATCACCTAATTTGGACTTCGGAGCTAAGAGTTATGGCCGTTTTACCGAGGTACATTTCTGCTGGAAATATACCTGCGGACAGTCCGCTCAAGGGGGGCGGACGGTCCGCCGTTATCTCGGATGAGCTCGAACAGAACCGTTTTTGGCTCTGTTGGTGGTCCAAAATGAACTGCGGACCGTCCGGTCCATGGGGGCGGACGGTCCGCCTTTAAAAGCTGAAACGGGCGCAGAAACTTGGTAGTTCTGTCTTGGGTGTCCAAAATGAACTGCGAACCGTCCGGTCCTTGGGGGCGGACGGTCCGCCTCCTACTGAAAATTCTGGGACAGAAATACTGCGGTTTCTGTGTGTGCTCACTTTTTGAACTGCGGACGGTCCGCCCCTGGGGAGCGGACAGTCCGCCGGTCACTTCTAGATTTAGTCAGAGACATTTGCAAATCGGTTGGTTCGAAGTTTTGAACTGCGGACAGTCCGCCCCAGGGGCGCGGACAGTCCGCCCGGGGCTCTAACGGTAGACTCTGACACATAATCATTGCAGTTCTAGCCGTTGGTTTTGAATGGCGGACGGTCCGGTCTCTGTGAGGCGAACAGTCCGCGAAAACTCTGTTTTCACGGGATTTGAGTGTAACGGCTAGTTTGGGGCCTCCCTCTATAAATAGAGGGTGTGGCCGGCCATTTGTGGTTGCTGAGCACCTTGGGGACTTGGTGTCCATGTGTGAGAGTGCTTGAGAGCCCTCTACTCACTCTAACTTGATAGTAATCATCCGATCGAGAGAG | |||||||||
gi|304463236|gb|HO261178.1|HO261178 CCTX780.g1 CCTW Panicum virgatum Cave-in-Rock normalized leaf Panicum virgatum cDNA clone CC AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): TGACAAATGTCAGCTGCTTGAAGCGTGCAGAGAAGAACATGGATGGATCACTGGTTGTGGAAGACGGTTCCAACTGGAGCATGGGCCAACGGCAGCTCTTCTGTTTGGGACGTGCACTTTTGAGAAGATGCCGTATCTTAGTTCTCGATGAGGCCACGGCATCTATAGACAACGCAACTGATGCTATCCTTCAAAAAACGATCAGAACAGAATTCAAAGATTCCACTGTTATTACTGTCGCACACCGTATACCAACAGTTATGGACTGCACTATGTTACTCACAATGGGTGATGTGGTGGAGTATGGCACACCTATGAAGCTCATGGAAACTGAAGGATCCCTCTTCCACGAGCTCGTCAAAGAGTACTGGTCATATGCATCAAGTGGAAATATTTAGGATAAAGGGAAATTATCGATTATGTGTGCTTACTCTTTGCAGTTTGCCTCGGTGAGTGCCGGGGAGGGGGAGGTGTCAGCCGTTGTCTAGAAATGCTTTTGTCATCTGGTTTCTACCTGAAATTTTTAGCAGCGCATGGGCAGCTTCTGTTTACACACGCCCGTGCTGCCTTCAAGTGCTAAACGGAAAATGGGATTTGTAACATGAAAAAATTGAGCATCTAAGGCATGCAGCTATGGGTGCTTGCGCACCCGTGCTGTCTTCAAGTGCTAAACAGAAACGGGGCGTGTAACATGAAACATTGAGCACCTAAAGCATGCAGCTGTGGGTGCTTGGTTAGGCATTGAGTTACTATTCCAACTGCTTAGAAGGAAATTC | |||||||||
gi|198186084|gb|FL903028.1|FL903028 CCGN9977.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN99 AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): CCTTCCCCCCTCTCCGCTCTCTCCCTCTCTTTGGGTGCGTGTGCAATTGAAAAGTGACAAGCATGGTGATTTCTTGTGTTTGATTTTGTGTTTTCGTTCTGATCTTTCTTGAGCACCCAGAAATCCATGGTGTAGTTTCTTTCTGTTCAGGGCCATTTCATGCATGCTAGCACGCACACATCTATACAACTATATATAGCTAGACCAAAAGAAATTATTTAATGAGTCACACGAGGTCGATCTTCATGGTGCCTTAGGGTTTTTATTTGCAGTTTGCCTGAAAGGGAGGAGCTGGGTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGTCACTCATTAGGCCCATCACTTCTTCCCCGCTAATATCTTACATGCGGATAGGATCTCTATGTCTTTTCTTCCTAAGTAATAACCAACACGATCTGATTCATGCATGATTTCTATTCATTTTTTTCTTGTAGGGAAACGATTGCAAAGCAAGCAATAATATTGATCAAACTTTCATCAGAGACGACTCTACATACGATAAAAAACAAGATTAGTGGTTGTGTTATTTCTCTATTTTTATTTTCCATTGTAATAAATTCCCAGTCATGTGGGTAGTGGTTGTGTTATTTCTCTCAAATAAGATGATTTTTAGGGTGCTTTCTAGC | |||||||||
gi|198113870|gb|FL843904.1|FL843904 CCGH23756.g1 CCGH Panicum virgatum late flowering buds + seed development (L) Panicum virgat AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): GTAGGTAGGTAGCTGCACATAGATACGTATACCGGCCGGCCGGGGCCATGGGGACGATGATGGGGGCGTGCCTCGGCGGCAGCCTGCCGGTGGCCGTGATGCTCTGCCTCAACGTGGTGGCGGCTGTCATGGTGTCGCTCGTCAAGGTGGCCATGGACGGCGGCATGAACCCGCTTGTGATCGTCACGCTGCAGCAGCTCACGGCCTCCGTCTTCCTCGCACCAATAGCCTTCTTCAAAGAGAGGAAGTCGAGGCCAAAGCTGACGCTGGAGATCTTCGCCTACATCTTCGTCAGTGCGGCGCTCGGGGCAGCTCTGCGGCAGTACATGATCTTCGTCGCCCTGCGCTACACCACCGCCACCTTCGTCACCGCCTTCTCTAACATCGCCCCCGTCCTCACCTTCCTCCTCGCCGTCGCAACACGCTCAGAAGCACTGAACCTCAAGTCCAAGACGGGCATGGCGAAGCTCCTGGGCACACTGGTCTCCCTGGGCGGCGCCATGGTGCTCACCCTCTACAAGGGCGTCGCCCTCACCCACGCGGCGGCATCGCAGCAGCAGCCCCTCCATTCTCA | |||||||||
gi|304476431|gb|HO279085.1|HO279085 CCTZ843.b1 CCTZ Panicum virgatum Pathfinder normalized leaf Panicum virgatum cDNA clone CCTZ AGAGAGTGAGCACACATGGTG EST sequence (targeted fragment marked with yellow): ACAGCTATCTGATCATCAAATGAAAATTCAACTATTGAAGGCTCTGCAGCCTCAGCAGCCTTTGATAATGGAGCAGCAGAAAATGTTCATGGACTTGCAGCATCAAACTGTAAATTCTAATTCCCAGTCATCTGCTCAGCAATGTGCACAAGTAGCTACCCAAGTGGGTGGTATGCATAACAGCAACACTATTCAGTACCCAACACAGCAAAAGACTCAACCTCACCAACCAATTCAAGATTTTCCTGGGAATGCCGCATCTGTTGCAAACCCAGAAATTGCTACCTCCGTGGGTGCTCGCTCTTTGCATGTGCCAAGTGGAGTGCGGTCATTGAAGACAGAAGATGTTCCCTCTTCGTCAACATCACCACCCGCAAACAATAATCCTGTTCTTTTGCAATCGCTTCCATGTAGCTCGAAGAACCAAAGTTTACTTGCTGTAGCGAAGACACCTCAATCATCTGCTATAGCGGGCCCTACACTTGAACAAGGCATGAAGCCTTACGAGAGTACACAGCAAATGGTGATGATTCCCAAGATGGCTGAACAAAAGCCAGGTACCAGGCAAGACTATGTGAACAACACTCGGATGGATTATCTGGACACATCCTCTTCAGCTACTTCAGTTTGCCTTTCTCAGCTGATGGATCATTGCATCAAAACTTTCCACCTTCATCCTTCAATCAGCATCAGATGTTAAAGAGAGACAGTTCCAGATAGCGAGTTTGAGGTTACAGATCCAGGAAATAACTTTTCTATTTGGGCAAACATTG | |||||||||