| mature miRNA: ATTGAGTGCAGCGTTGATGA species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|304498279|gb|HO300070.1|HO300070 CFCA6113.g1 CFCA Panicum virgatum Sunburst normalized leaf Panicum virgatum cDNA clone CFCA6 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TTGCGGTGCGGTGAAAATACTAATCTTGATGCTGCCACAAGGTTGCTACTTGAAACTAAGTACCGGAGATTACCTGTAGTTGATAGCACAGGAAAACTAGTTGGGGTGATAACAAGGGGAAATGTCGTCAAAGCTGCTCTCAAAATAAAGAAGAAATCTGAAGATGGTGCTTGAATCGCATAGTGCCTTAGGGGTTCAATTCATTGAGAGATTGATTGATGAAGTTCATTACTGTTGTATATGCTGTAGTGCAGCTCCAAGTTCTACCTAGACACCAATAGATGGATATGGTGTTGTATACGGATTGATATAAATTGCGAAGGGCTTTGATATAGATTCATATAGGAACTGCTTAATTCATTTGAGGTAATCATACTTGGTTCCCTCTCAATATAAGGTAGTGCTAGTGTAGCGGTGTATAGGTTGATGTTTCACTATTTATTTGAACCTTGTATTCCTGGATATTTCTTATTGATTTATATAGTGAGGTCTAGATCTTGTGAT | |||||||||
gi|304467546|gb|HO265681.1|HO265681 CCTY3307.g1 CCTY Panicum virgatum Kanlow normalized leaf Panicum virgatum cDNA clone CCTY330 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GAGTCCCAAAGTTCATTTTAATCTCTGTTCATGACTACAATCTTCCATCCTTTCTTCTTACCTCGGGCTACTTCACGGGTAAGAGAAAGGCTGAGTCTGAAGTCCTCGCAAAATACCCGGGCTCAGGTGTTGTGTTGAGGCCAGGCTTCATTTACGGTAAAAGGAAGGTAAATGGCTTTGAGATACCGCTCGACGCTGTCGGACAACCATTAGAGAAACTGCTTTCCTCGGTTGAAAACTTCACCAAACCTTTGAGCTCACTGCCTGCTTCTGACCTAGTCCTCGCACCCCCAGTGAGCGTGGATGATGTCGCCTACGCTGCAATCAATGCAGTCGTAGATGACAGCTTCTTTGGGGTGTTCACGATCGAGCAAATCAAGGAAGCCGCTGCCAAAGTAAGAGTGTGAACCTGGGGCCTTGTTCCGCTGTCTCTGAAGGTGTCATAGATGGAAAGTTTCTAAATTCAGCAGCAACTCAAATGATCCCTGTGGATTGTCTTCCCCTGAATCTTTGACCATAGTGGATAGTAAAAAATCAGTGCAACATAGTTCTTTTGTTC | |||||||||
gi|197986321|gb|FL729698.1|FL729698 CCGB10639.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB10639 5', ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GAAATTGTTTCCTTTGTTTGTTACTGTGCAATGATGTCAATATAATATTTTTTTCTATTTGGGCTTAATTATCTGAGCAAAGAAATGTCCATGCAGTGGTTTTTGGATGTGATGAGAACTTCATATGTGTTGTGTGGGAAGTCTGGGAACTTCATAAGAAAGTGGATACGATGGAATCATTGAGCTCTTGGGCTCTGGCATATCTGATCTGTGCGCCTGTAATCTCACATATTGCCCTCTTGAGAACAGAAATGTCCATTCAGTGTTTTTTTCCCCGGATATGATGGTAACTTTATATGTGTTGTTTGAATGGCCCAAAATTTGTACAAGAATTTGTGATTCTTTGTGTATTTTATTCTCAAGTGCTACATGTACATTTGCATATGAAATTTGTTTTTGCTAGAATACTAATGTTGGACCTCTAATTTCATTCCAATTCCCAGGATGGATGTGAACTGGCTGCAAAATGAACCACAAGATTTTGGTTATGGGAGTATAACAATGAGATTAAACGACCTGGCATCCTAAAGTTACGCGGGCAATCTTGTACTCAGCAGATGGGAGCCCCAGGAATGTCGCATGCTCTTTTTGCTGGCTATCCTCTCCAGTAGCATCTATGCACCGCATGATTCTCAAAATCTGCCTGCACAAAAGCAGATCCAATGGATGAAAGCTGGCGTTGAGAGCTGTTATGATGCCAGTTGATCCAATCCTCAGTTCAGTGACTACATGTCTCCAAATCCTATTCCTGCTTCTGAACGCTGCCCTCAATGTGGGTTCAAGCTAGTGGATTCAATCCAGCGGCATA | |||||||||
gi|169684485|gb|FE615210.1|FE615210 CBYX12572.b1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX12572 5', m ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GAAAAGAGAAAGGGGCGCGAAGGCATCATTGAGTGCAGCGTTGATGAGCCGCCGGCGGCGAGGTCCGCCGGCCGCGGCTCACCGGCGCTGCACTCAATAACGCCTTTGCTCTCTCTGGCCGTCGACGGCGAGCGCTAGCCCCTCGTAGCCGTGCAGGCATCCCTCAATCATCAGGAACTCTGCTGGCCGAGTTGTGAGCAGGCTCACCGATCGGAGCAATGTCTCTGTCCCGCGCTCATCCCGATCTGCCTTTGCAAGCAACTTTTTTAGAATTAGTAGCACATGGTAGGAGCTTTTTTTTTTTGGCACTAGCAAGATCTGGTTTGTTGTTGCCTTCTGAATTTGCGCTGTGTTCTGTTCAGAATTCGCATGAACGATGCAAGTCAAGTCCCACTGATCGATGATGGGTAGAAGCAATGCACACACGCGACGAGGAGACCGCTAAGCCGGAGAAGCTACAGGGGAACAAGAAGCGCCGGCCGGCCGGCGTCGACGCCGGTCAGTTGGGGCCCCAGCACACGAGGTGGTAGGCCTTGCGCATCCTGGCGTCCGCCGCCGCCGCCGCGGGGTCCGAGAGCGCGGCGGACAGGGCGCGGATCCGGGGCGCGGCTGCGCGGCGGTAAAGCGAGCGCAGCGCGTAGTCCCAGCGGCACAGGCC | |||||||||
gi|304490044|gb|HO287068.1|HO287068 CFBY5343.b1 CFBY Panicum virgatum Dacotah normalized leaf Panicum virgatum cDNA clone CFBY53 ATTGAGTGCAG-CGTTGATGA EST sequence (targeted fragment marked with yellow): GGCAAGAAGGAAGCAGTGGAGGCGGCGCCGGTGGAGGAGAATGAAAGCGATGCGGTGGCGGAAGGGAAGCGCGTCATCGTCAAGGCCTGCACTCAATGCAGACAGTTTAAGATACGAGCTCAGAAGGTGAAGGAGGACCTGGAAAATTCTGTTCCTGGGGTTTCTGTGATAATCAACCCTCAGAAGCCACGGCGCGGTTGCCTCGAGATACGTGAAGAAGGAGGTGAAGTGTTCATATCACTTCTGAACATGCCACGCCCCTTCACGCCAATGAAGAAACTCGATATGGATAAGGTTATCAAGGACATTGCAAAGAAAATCTCCTAAATCAAGTTGGCTGGCCATGGCTCGATGGCACCATTTTGTGCTCCAAAGCTTCAAGCTGAGCAAGTAATCCTCCAAGTGTACGGTGTACCTTCGTGTAGAGTCACCATTAATCGCACTTCCGACTGCATTGTCGATGTCTCTTCCATAGAATTTGGAAGCAGTGGTCCATTCTGTCTTGAGCTAAGACATGTTGAATTAGTAGATGTGGCAACTACTAGTGCTTTCTATGCCATGAAAGGTTCACAAAGAAATTCCAGGAACAACAAGGGAGCTAAGTGGAAACACTAGCCTGACAAGCTGAATGTCAAATCCCTAGTAATCGAGAGATCATAATATCAAATCATAGACAATGCAGTAAACTCACATGATGTTTAGCCATAAGACACTAGTCCATGTGACCA | |||||||||
gi|198331454|gb|GD000919.1|GD000919 CCHY26865.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY26865 3', mRNA ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CATCTAAAGTGGAAGATCGTCCCGACCAAAGACGTCATCGACTCTGCATTCAAGGACCCTGTGAAGCGCGAAAAAAATCAGGAAGAACAAGCTCATCTACCAGGACAAGCCCCGGCTGAAGACAGCTCTGGAGCTGCTCAGAACCAGCATGGATGTGGAAGATAGCCTGTCAGAGGTAAGGATGCCGTTCTTCATCCTTCACGGCGAGGCTGACACGGTGACCGACCCAGAGGTCAGCCGAGCCCTGTATGAGAGGGCAGCAAGCACCGACAAGACCATCAAGCTCTATCCGGGGATGTGGCATGGCCTTACCGCCGGTGAGCCAGATGAGAATGTGGAGTTGGTGTTCTCGGACATTGTTGCGTGGCTTGATGAGCGCAGTCGCCATTGGAAACCTGAAGCG | |||||||||
gi|198372844|gb|GD042925.1|GD042925 CCHZ22563.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TATCAGAGAAGTGAAACCACATCCGGTCGTGATTACCCTCCTGACGCAAGTGGAAGACATCATCCCAAAGTGGAAGATCGTCCCGACCAAAGACGTCATCGACTCTGCATTCAAGGACCCTGTGAAGCGCGAAAAAATCAGGAAGAACAAGCTCATCTACCAGGACAAGCCCCGGCTGAAGACAGCTCTGGAGCTGCTCAGAACCAGCATGGATGTGGAAGATAGCCTGTCAGAGGTAAGGATGCCGTTCTTCATCCTTCACGGCGAGGCTGACACGGTGACCGACCCAGAGGTCAGCCGAGCCCTGTATGAGAGGGCAGCAAGCACTGACAAGACCATCAAGCTCTATCCGGGGATGTGGCATGGCCTTACCGCCGGTGAGCCAGATGAGAATGTGGAGTTGGTGTTCTCGGACATTGTTGCGTGGCTTGATGAGCGCAGTCGCCATTGGAAACCTGAAGAGCGGGTAAGACCTCCATCAGAGCCCAAGAAGCTCCACCAGACGGAGCCCACAAAGATCACCCACGTTGCCAGCGGCGGTGGCACAGAGAGTCCGGTGCCGGCACACAACCGGCCTCAACGGCGTGGCAGCTTCCTCTGCGGACTAGGCGGCCGACCATACCAGCAGCAATGTAGGATGTAGATATGGAAAAACATTTCCATTGATCAGTTGTTCACTAACAACTGTACATGGCTTAAGAAACAGGTATAATGGTGATATAAACAGTATGCTGAACTGATGTTCAATAAAATCTTGTTGCATC | |||||||||
gi|304521125|gb|HO319593.1|HO319593 CFHB1309.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB1309 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CGGGCGACAACTGGAAGCTGGTTGGGCTCGTCTCAGATTATGATCTGTTAGCACTGGACTCCAATGTCAGGAAATGGACTGGCTGATACGAATAAAAACATGTTCCCTGATGTGGATAGTACATGGAAGACATTCCGTGAGATACAAAGGCTGCTAAGCAAAACTAATGGCAAAGTCATTGGTGATGTTATGACTTCTTCACCTATTGCGGTGCGTGAAAATACTAATCTTGATGCTGCCACAAGGTTGCTACTTGAAACTAAGTACCGGAGATTACCTGTAGTTGATAGCACAGGAAAACTAGTTGGGACGATAACAAGGGGAAATGTCGTCAAAGCTGCTCTCAAAATAAAGAAGAAATCTGAAGAAGGTGCTTGAATCGCATAGTGCCTTAGGGGTTCAATTCATTGAGAGATTGATTGATGAAGTTCATTACTGTTGTATATGCAGTAGTGCAGCTCCAAGTTCTACCTAGACACCAATAGATGGATATGGTGTTGTATACGGATTGATATAAATTGCGAAGGGCTTTGATATAGATTCATATAGGAACTGCTTAATTCATTTGAGGTAATCATACTTGGTTCCCTCTCAATATAAGGTAGTGCTAGTGTAGCGGTGTATAGGTTGATGTTTCACTATTTATTTGAACCTTGTATTCCTGGATATTTCTTATTGATTTATATAGTGAGGTCG | |||||||||
gi|198124594|gb|FL852629.1|FL852629 CCGI2283.g1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI22 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GTGTTGTTCAGAGCTTGGTTGCGCAGCTCCAGAACTGACTTTGTATTAGGCCGACAGAGCAATGGCTCAGAGAGCATAACTATTGGCTCATATTTGGAGACCTTTTGTTCTACGTCAATAGTACCCCTATTGGATCCACTGATGATTTTACTATGATTAACAGGTGTAGTGAAATAATCTAAATCACAATTATATTGCTCAAGTATCTTTCTAATCCAGTTATCAGGGCAACTGATAGATTTTTAATTTTTCTGATGTTCTCATATAGAAGTTATAATGTTAGTGTGTTTTCATTTATAAATTCTGGCATTTTTAGTAGTATGCAGAGGTATGGGCAGTAGATGAAGCACATCCCCATATGGCTCCAGAAGGTGGCGAGAGTGTCGTAGATGTTGCTAATAGACTATTAGCTGTGCTGTCTTCTACAGAGACAGATTTTCATAGCTCAGAAATCCTTATAGTCAGCCATGGGGACCCACTACAAATCTTTCACGCTGTACTCAGTGGAGCCAAGGAGAACGCATCTTTCCTTGATGGCGTGAGAGACCTGAAAGTGAAAGGCACGGCTGTGGCATCTGTGCTATCACAGCATCGTAAGTTTGCACTTGCCACAGGAGAGGTGCGCCGAGTTGTGTAACTTGCTGCTTCTTGGATTTTCATTGTTATCCAATATATAACTTGTAGATCCCAATATTCATCTAGCTCATTCTCTGTAACTGGACCGCGATTTGAATGGATACAAAGTGCATGGTTATTCGTT | |||||||||
gi|198308313|gb|FL976759.1|FL976759 CCHY13523.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY13523 3', mRNA ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TCATCCAAAGTGGAAGATCGTCCGACCAAAGACGTCATCGACTCTGCATTCAAGGACCCTGTGAAGCGCGAAAAAATCAGGAAGAACAAGCTCATCTACCAGGACAAGCCCCGGCTGAAGACAGCTCTGGAGCTGCTCAGAACCAGCATGGATGTGGAAGATAGCCTGTCAGAGGTAAGGATGCCGTTCTTCATCCTTCACGGCGAGGCTGACACGGTGACCGACCCAGAGGTCAGCCGAGCCCTGTATGAGAGGGCAGCAAGCATTGACAAGACCATCAAGCTCTATCCGGGGATGTGGCATGGCCTTACCGCCGGTGAGCCAGATGAGAATGTGGAGTTGGTGTTCTCGGACATTGTTGCGTGGCTTGATGAGCGCAGTCGCCATTGGAAACCTGAAGAGCGGGTAAGACCTCCATTAGAGCCCAAGAAGCTCCACCAGACGGCGCCCACAAAGATCACCCACGTTGCCAGCGGCGGTGGCACAGAGAGTCCGGTGCCGGCACACAACCGGCCTCAACGGCATGGCAGCTTCCTCTGCGGACTAGGCGGCCGACCATACCAGCAGCAATGTAGGATGTAGATATGGAAAACATTTCCATTGATCAGTTGTTCACTAACAACTGTACATGGCTTAAGAAAACAGGTATAATGGTGATATAAACAGTATGCTGAACTGATGTTCAATAAAATCTTGTTGCATCATCAT | |||||||||
gi|198110513|gb|FL837282.1|FL837282 CCGH19971.g1 CCGH Panicum virgatum late flowering buds + seed development (L) Panicum virgat ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GGAGGATTTGGCATGAAGAACAAATGAAAAGGATAAATGGTGAGGCAAATATCATAGCAGTAAATGCTGCAAAAGAATATGGAGTCCCAAAGTTCATTTTAATCTCTGTTCATGACTACAATCTTCCATCCTTTCTTCTTACCTCGGGCTACTTCACGGGTAAGAGAAAGGCCGAGTCTGAAGTCCTCGCAAAATACCCGGGCTCAGGTGTTGTGTTGAGGCCAGGCTTCATTTACGGTAAAAGGAAAGTAAATGGCTTTGAGATACCACTCGACGCTGACCGACAACCATTAGAGAAGCTGCTTTCCTCGGTTGAAAACTTCACCAAACCGTTGAGCTCGTTGCCTGCTTCTGACCTAGTCCTCGCACCCCCAGTGAGCGTGGATGATGTCGTCTACGCTGCAATCAACGCAGTCGTAGATGACAGCTTCTTTGGGGTGTTCACGATCGAGCAAATCAAGGAAGCCGCTGCCAAAGTAAGAGCGTGAACCGGAAGCCTGGTTTCGCTGTCTCTGAAGGTGTCATAGATGGAAAGTTTCTAAATTCAGCAGTAACTCAAATTATCCCTGTGGATTGTCTTCCCCCTGAATCTTTGACCTTAGTGGATAGTTCAAAAATCAGTGCAACGTAGTTCTTTTTTTTTATATGCTGAATTTTGCACCCCCTCGGGAGCTAACAGAACGAATTGTACCGTGGGTCGCAGAATTTGTCATGTCGGTCCAATATGTTACTGAAGTTTC | |||||||||
gi|169670335|gb|FE599510.1|FE599510 CBYX2388.b1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX2388 5', mRN ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AAAAGAGAAAGGGGCGCGAAGGCATCATTGAGTGCAGCGTTGATGAGCCGCCGGCGGCGAGGTCCGCCGGCCGCGGCTCACCGGCGCTGCACTCAATAACGCCTTTGCTCTCTCTGGCCGGCGACGGCGAGCGCTAGCCCCTCATAGCCGTGCAGGCATCCCTCAATCATCAGGAACTCTGCTGGCCGAGTT | |||||||||
gi|198093254|gb|FL820768.1|FL820768 CCGG17491.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GGAGAAGAAGACCTCGTCATTATTTATTACAACATGTATCTTAATGATGGCAAAACCACGGGCTAGACATATCATTCTATTATGGATAGGTAGTTGTCTTGATCTCCGATTATTCAGTCTAATGAAATGTCCATAATCACAACATTCGAGAATCAGTGCAGGGCTTTGACAAGCATCTCGAGTCCCGATGAAGACTCTAGTCGATTCCTTGTAGGAACACTATCGCCAAATGGAAATAATCTATTATATCTGTTCGAGTATAAAGATGATAACAATAACCTCGCCAAGGTTTCATTCACATTTCCGTTTGGCGAAGTCTGGCACCTTGGCGCTAGTTCAAGATATTCAAATCTTGTAGCTGGTGTTTTGGGAAACAGGAACAGATTAAGTGTTGGCTTGTTTAAATTGCCTGAGCAGCTGGTCAACTCATCCATAGAGGACGATTATGGATTGTCAGAGTTGTCCATCGAGCAATTAGTTCAATTCGATCACGGTGACGATAAGGACCTGGTTCGTCAAAGCAGGTGGCATCCCGATGATGGCTATCAGCTCTTAACTTGCAGCAATGCTGTGCTCAATTTTTGGGACATCGAGCAGCAGAAGAAAGCCAGGACGTTCTCACTTGTTTCAGCCACTGAGAAACATTCCAAATCTATACAGGTTGAGAGCGAAGATACAGGCGCCAATTCTAGAGAGACAAAGCATTTGGGCAGTCACCGACCTTAGATGGTCTTCACTATTCGACTGTAGTGTTGTTGCTGCTGCAGTTGGGTTCGGAAATATATGGAATCGACACGCGAAT | |||||||||
gi|304490676|gb|HO286308.1|HO286308 CFBY4925.b1 CFBY Panicum virgatum Dacotah normalized leaf Panicum virgatum cDNA clone CFBY49 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GTTCGGATTCGCCAGCAAATTTGCCACCGGGACTTGAAGCTGGAGAACACGCTGCTGGATGGCAGCCCGGCGCCGCGCCTGAAGATCCGCGACTTTGGTTACTCCAAGTCATCACTGCTGCACTCGAAGCCCAAGTCGACGGTCGGAACTCCAGCGTACATTGCTCCAGAGGTGCTCTCACGTGGGGAATATGACGGCAAGATGGCAGATGTTCGGTCTTGTGGAGTGACTCTTTACGTGATGCTGGTTGGTGCATACCCTTTTGAGGACCCTGATGATCCTAAGAATTTTAGAAAGACGATTGGGAGAATAGTGTCAATTCAATACCAAATACCAGAGTATGTACACATATCCCAAGATTGCAGACAGCTCCTCTCTAGAATCTTCGTTGCGAAT | |||||||||
gi|198074078|gb|FL803558.1|FL803558 CCGG468.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatum ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TAGTAACCGAACGCGAAGCAGAAGCCTCCTCGTCAAGCTTCGAATCCTCCCCTCCTCCTCCCCACCTCCTCCCTCTCCAACGCCAAAACACCCCCCCGCGGCCGGCGAATTCCCCACGCGCGCGGCCTCCCGGCCCGATCGGATCCTCGCCAGGGATTCCGATGGAGAGGTACGAGCTGCTCAAGGACCTCGGCTCCGGCAACTTCGGGGTGGCGCGGCTTATGCGGAACAGGGAGACCAAGGAGCTCGTCGCCATGAAGTACATCCCCCGGGGGCTCAAGATTGACGAGAATGTGGCGAGGGAGATCATAAACCACCGCTCGCTGCGGCACCCCAACATCATCCGCTTCAAGGAGGTCGTGCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCGCCGGCGGCGAGCTCTTCGACCGGATCTGCAGCGCCGGCAGGTTCAGCGAGGATGAGGCGAGGTATTTCTTCCAGCAGCTCATCTGCGGTGTCAGCTACTGCCACTTCATGCAAATTTGCCACCGGGACTTGAAGCTGGAGAACACGCTGCTGGGATGGCAGCCCGGCGCCGCGCCTGAAGATCTGCGACTTTGGCTACTCCAAGTCATCACTGCTGCACTCGAAGCCTAAGTCGACGGTCGGAACTCCAGCTTACATTGCTCCAGAGGTGCTCTCACGTCGGGAATATGACGGCAAGATGGCAGACGTTTGGGTCTTGTGGAGTGACCTCTTTACGTGATGCTGGT | |||||||||
gi|198324823|gb|FL993147.1|FL993147 CCHY22334.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY22334 5', mRNA ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AACCACATCCGGTCGTGATTACCCTCCTGACGCAAGTGGAAGACATCATCCCAAAGTGGAAGATCGTCCCGACCAAAGACGTCATCGACTCTGCATTCAAGGACCCTGTGAAGCGCGAAAAAAATCAGGAAGAACAAGCTCATCTACCAGGACAAGCCCCGGCTGAAGACAGCTCTGGAGCTGCTCAGAACCAGCATGGATGTGGAAGATAGCCTGTCAGAGGTAAGGATGCCGTTCTTCATCCTTCACGGCGAGGCCGACACGGTGACCGACCCAGAGGTCAGCCGAGCCCTGTATGAGAGGGCAGCAAGCACCGACAAGACCATCAAGCTCTATCCGGGGATGTGGCATGGCCTTACCGCCGGTGAGCCAGATGAGAATGTGGAGTTGGTGTTCTCGGACATTGTTGCGTGGCTTGATGAGCGCAGTCGCCATTGGAAACCTGAAGAGCGGGTAAGACCTCCATCAGAGCCCAAGAAGCTCCACCAGATGGCGCCCACAAAGATCACCCACGTTGCCAGCGGCGGTGGCACAGATAGTCCGGTGCCGGCACACAACCGGCCTCAACGGCGTGGCAGCTTCCTCTGCGGACTAGGCGGCCGACCATACCAGCAGCAATGTAGGATGTAGATATGGAACAACATTTCCATTGATCAGTTGTTCACTAACAACTGTATATGGCTTAGAAACAGGTATATGGTGATATAAACAGTATGCTGAACTGATG | |||||||||
gi|304450575|gb|HO245434.1|HO245434 CCTW1817.b1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW1 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TACATCATTGACACTGTGCTCAATTATCTACATCACAACAAGTTTCTTTGGATACCTCCTCTTTGGCGAGTCTACGCTCTCTGATGTGCTCTCAAACTTTGATTCAAATCTTGGGATCCCATATAGTTCAGTTCTAAATGATGCTGTCAGAGTGAGCTATGCTGTTCACCTTATGCTCGTGTTCCCTATGATATTCCATGCACTGCGTCTTAATTTGGATGGGCTTCTCTTCGCATCTGCAAGGCCTCTGTCTTCTGACAACAGGAGATTTAGTGCAATGACAGCAGTGCTCCTCCTGGTGATTTTTGGGTCTGCAAACTTCATTCCTAGTATATGGGATGCCTTTCAATTTACTGGAGCTACTGCTGCTGTTTGTATTGCCTTTATTTTCCCAGCTGCAATCACTCTAAGGGATCCACAAGGTATAGCAAAGAAGTGGGACAAGATTTTGGCTGTCTTCATGATTGTTCTTGCGGTTGTATCAAATGTAGTAGCGGTGTACAGCGATGCCTACAAAATGTTCCACAAGAAAAGTGCTCCTTCCCAGGCCTGAACTGGAAAATCTGCTGAAGATTTGTCTTCATGGTGGTTTGTACATTAGTAGTCAATAAAAGATTCATTTAAAGGTTTCATGTGATTGATTTTGATAATTTGTTTCACGGGCAAGGTCGACTCATTCATGTTGAGTTTCATGTATGTATGTATACTAGATGCACAAACCGTTAGAGTTCAGACTGAAGTGCTTCGGTACAGTATAAAAGCGGGGCAGTTGTGTCAAATGTGAAATTATA | |||||||||
gi|304497736|gb|HO299475.1|HO299475 CFCA5789.b1 CFCA Panicum virgatum Sunburst normalized leaf Panicum virgatum cDNA clone CFCA5 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CAACTTCGGGGTGGCGCGGCTCATGCGGAACAAGGAGACCAGGGAGCTCGTCGCCATGAAGTACATCCCCAGGGGGCTCAAGATTGACGAGAATGTGGCGAGGGAGATCATAAACCACCGCTCGCTGCGGCACCCCAACATCATCCGCTTCAAGGAGGTCGTGCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCGCCGGCGGTGAGCTCTTCGACCGGATCTGCAGCGCCGGCAGGTTCAGCGAGGATGAGGCGCGGTATTTCTTCCAGCAGCTCATCTGCGGTGTTAGCTACTGTCACTTCATGCAAATTTGCCACCGGGACTTGAAGCTGGAGAACACGCTGCTGGATGGCAGCCCGGCGCCGCGCCTGAAGATCTGCGACTTTGGTTACTCCAAGTCATCACTGCTGCACTCGAAGCCCAAGTCGACGGTCGGAACTCCAGCGTACATTGCTCCAGAGGTGCTCTCACGTGGGGAATATGACGGCAAGATGGCAGATGTTTGGTCTTGTGGAGTGACTCTTTACGTGATGCTGGTTGGTGCATACCCTTTTGAGGACCCTGATGATCCTAAGAATTTTAGAAAGACGATTGGGAGAATAGTGTCAATTCAATACCAAATACCAGAGTATGTACACATATCCCAAGATTGCAGACAGCTCCTCTCTAGAATCTTCGTTGCGAATCCTGTGAAGAGATAACGATAGGAGATTAGGAACCACCCCTGGTTCCTAAAGAACTTGCCAGAGA | |||||||||
gi|304516991|gb|HO312082.1|HO312082 CFHA2382.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2382 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GAATAAAAACATGTTCCCTGATGTGGATAGTACATGGAAGACATTCCGTGAGATACAAAGGCTGCTAAGCAAAACTAATGGCAAAGTCATTGGTGATGTTATGACTTCTTCACCTATTGCGGTGCGTGAAAATACTAATCTTGATGCTGCCACAAGGTTGCTACTTGAAACTAAGTACCGGAGATTACCTGTAGTTGATAGCACAGGAAAACTAGTTGGGATGATAACAAGGGGAAATGTCGTCAAAGCTGCTCTCAAAATAAAGAAGAAATCTGAAGAAGGTGCTTGAATCGCATAGTGCCTTAGGGGTTCAATTCATTGAGAGATTGATTGATGAAGTTCATTACTGTTGTATATGCAGTAGTGCAGCTCCAAGTTCTACCTAGACACCAATAGATGGATATGGTGTTGTATACGGATTGATATAAATTGCGAAGGGCTTTGATATAGATTCATATAGGAACTGCTTAATTCATTTGAGGTAATCATACTTGGTTCCCTCTCAATATAAGGTAGTGCTAGTGTAGCGGTGTATAGGTTGATGTTTCACTATTTATTTGAACCTTGTATTCCTGGATATTTCTTATTGATTTATATAGTGAGGTCTAGATCTTGTGGT | |||||||||
gi|198009062|gb|FL753322.1|FL753322 CCGC564.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatu ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GAGCATCCACTGGCACGGCATCCGGCAGCTGCGGAGCGGGTGGGCAGACGGCCCGGCGTACATCACGCAGTGCCCGATCCAGAGCGGGCAGAGCTACGTGTACAAGTTCACCATCACCGGGCAGCGCGGCACGCTGTGGTGGCACGCGCACATCTCCTGGCTCCGCGCCACCGTCTACGGCGCCATCGTCATCCTCCCCAAGCCCGGCGTCCCCTACCCGTTCCCGGCGCCCGACAAGGAGGTCCCCATCATGTTCGGCGAGTGGTGGACGGCGGACACGGAGGCGGTGATCAGCCAAGCGCTCCAGACCGGCGGAGGCCCCAACGTCTCCGACGCTTTCACCATCAACGGCCTCCCTGGGCCGCTCTACAACTGCTCCGCCAAAGACACGTTCAAGCTGAAGGTGCAGCCAGGCAAGACGTACATGCTCCGGATCATCAACGCTGCACTCAATGACGAGCTCTTCTTCTCCATCGCCGGCCACCCGCTCACCATCGTCGACGTCGACGCGGTCTACATCAAGCCCATCACCGTGGGAGACCATCCTCATCACCCCGGGGCAGACCACCAACGTGCTCCTCACCACAAAGCCGTCGTACCCCGGCGCCACCTACTACATGCTGGCCGCGCCCTACTCCACGGCGAGGTCCGGGACCTTCGACAACACAACCGTCGCCGGCATCCTCGAGTACGAGGGACCCCGGCGTCCCCTTCCCCCGCGGCTTTCACA | |||||||||
gi|198081334|gb|FL807693.1|FL807693 CCGG6773.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TATTTCAGCAATTATTAATGCTGAATTCGTTTTTTTTTTGCATTTTCCTTTTCAGATTCACTTGCTGAGAGGTGTTGATTTGTTTTCCCCCTTTCCAGATCTTAAGTTCTTCCAGGAGCTTCTTTGGCGTGGAGGACTTTGTGGATGAAGACAACAGTAGACCCTACACATACAAGAAGGAAAAGAGATCGAAGAACCCACACAAGCACATTTCTTTCAAGCAGCGCACCATCGCACACATGGAGCCCTTCACGCTCGACGTCTTCATCTCCAAGCGCTTTGTCTCGGCGTCCCTCACACACCGTTCGACGTGCAGGCAGGTCGCGGTCGCGGGGACCAATTCGAAGGACATCAAGGCTGCGCTCAAGTCGAGGTCCGACATACCGGCCTGCCTGGCCGTGGGCCGTTTCCTGGCGGAGAGGGCGAAGGAGGCCGACGTCTACACCTGCACCTACACGCCGAGGGAGCGGGACAGGTTCGAGGGGAAGATCAGGGCTGTTGTCCAGTCGCTGATCGATAACGGGATCAATGTGAAGCTCTACCTTGACTGAGCTTTTGATGTATGGAACTATGGGCAACTTTTCTGGTACTTGCAAAATGAGCAGCCTGTGGCATGGTGTTCTTCTATCATGGCCGCGACGATCACTACCACCCTGTTGTGATATGCCACTCTGTTCTGGTACCGATGAGTTGTTCTGTTGACGTTCTCGTGCTCTCGTTGGCTGGAAGATGATGCGATTTGTTT | |||||||||
gi|198005425|gb|FL747383.1|FL747383 CCGC2560.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GCGGAACAAGGAGACCAGGGAGCTCGTCGCCATGAAGTACATCCCCAGGGGGCTCAAGATTGACGAGAATGTGGCGAGGGAGATCATAAACCACCGCTCGCTGCGGCACTCCAACATCATCCGCTTCAAGGAGGTCGTGCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCGCCGGCGGTGAGCTCTTCGACCGGATCTGCAGCGCCGGCAGGTTCAGCGAGGATGAGGCGCGGTATTTCTTCCAGCAGCTCATCTGCGGTGTCAGCTACTGCCACTTCATGCAAATTTGCCACCGGGACTTGAAGCTGGAGAACACGCTGCTGGATGGCAGCCCGGCGCCGCGCCTGAAGATCTGTGACTTTGGTTACTCCAAGTCATCACTGCTGCACTCGAAGCCCAAGTCGACGGTCGGAACTCCAGCGTACATTGCTCCAGAGGTGCTCTCACGTGGGGAATATGACGGCAAGATGGCAGATGTTTGGTCTTGTGGAGTGACTCTTTACGTGATGCTGGTTGGTGCATACCCTTTTGAGGACCCTGATGATCCTAAGAATTTTAGAAAGACGATGGGAGAATAGTGTCAATTCAATACCAAATACCAGAGTTTGTACACATATCCCAAGATTGCAGACAGCTCCTCTCTAGAATCTTCGTTGCGAATCCTGTGAAGAGAATAACGATAGGGAGATTAGGAACACCCCTGGTTCCTGAAGAACTTGCCCAGAGAGCTTACAGAAGCTGTGCAGCGAGTACT | |||||||||
gi|197963615|gb|FL705854.1|FL705854 CCGA9568.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA9568 5', m ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GCTAAGCTTGAGTCCATCTCTGGAGTTTTGCACTTTGTAGTGCCGTTGCTTCGGACTTGATTTGCAGATTTTGAAGCTCTTTACACCTAGTTGCATTCTCTTTGTTCATGCTTCGGACTTGGTTTGCAGATTTTGCAGCTCTTCACACCTAGTTGCATTCACTCTGATGAACATTGTGGTTGCTAACTCTCTATTTAAGATAAATTTTATATTTCACGATACAATAGTTACTCCTAGTAATTACACTTCAGGAACACTGCATTCAATTTTTCTATTTTTAGTTTTGAGTTTTTCAGTTTTGATGCTTGGATTTCCACCTAAAGAGTAATAATGTATTAAAAAATTTCAACAAGTTGGGACCTAAAAGTGGGATTGGGCTTGGCATAGAACTTGTTTCATGCTTAGTATGCTCATGTTTACAAAGATCGAGGACGCACTTGGGGAGAACGCAGAGCTATTCAAGAACCATTACTATGTTAAATCATCAGGCAACTGTGACCTTTCACCAATGAGTGATCCCCACAATGAGTTCAATGGTAAAAATGTGCTGATAGAAAGAAAACCAGCTTCTCTGATGGTGTCGAAGTCTGGGAAGTCTCTTGATGAATATTCTCAAATCCTGGGGGCTTGTCGGCAGAAGCTGTTCGATATCCGGTCCAAAAGGCCAAGACCTCATTTGGATGACAAGGTTATTGTTTCATGGAATGGACTAGCAATATCTGCTTTTGCAAGAGCTTCACAAATTCTGAAGTCAGGACAAAGTGGAAGCAGATTCAATTTCCCAGTAGCTGGATGCATCCAGCTGATATCTGAAGTTGCAGAAAGCAGCGACTTTA | |||||||||
gi|169681763|gb|FE612706.1|FE612706 CBYX10944.b1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX10944 5', m ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CCTCCCTCTCCACTTGCCTGCATGCTCTCTCTCTCTCTCTCTCTCTAGCAATAATTAGTAGCTTCTGGTGACATTATATTGCTCCCTGCAAAATTGTTGTTGATTCTCCTCAAGCTCTGATTCGAGAAGGCGTCGCGCGGATCAGCTGACTCTAGAAGATGGACGTGCGATACCATGAGGAGTTCGTGATGAACCCGCGGGGCGTGCAGCTCTTCACGTGCGGCTGGCTGCCGGCGTCCCCCTCGCCCAAGGCGCTCGTCTTCCTCTGCCATGGTTACGGGATGGAGTGCAGCGACTTCATGAGAGCATGTGGTATCAAGTTGGCCACAGCAGGGTATGGTGTGTTTGGGATTGATTATGAGGGCCACGGCAAGTCTATGGGGGCCAGGTGCTACATCCAGAAGTTTGAAAACCTTGTCGCTGACTGCGACATGTTCTTCAAGTCCATCTGTGCCATGGAGGATTACAGAAACAAAAGCCGGTTCTTGTACGGTGAGTCCATGGGAGGAGCCGTTGCTCTACTGCTGCACAGGAAGGATCCGACCTTTTGGGATGGTGCCGTCCTTGTGGCACCAATGTGCAAGATATCAGAGAAGGTGAAACCACATCCGGTCGTGATTACCCTCCTGACGCAGTGGAAGACATCATCCCAAAGTGGAAGATCGTCCCGACCAAAGACGTCATCGACTCTGCATTCAAG | |||||||||
gi|198072915|gb|FL803268.1|FL803268 CCGG4531.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CTCCTCCCCACCTCCTCCCTCTCCAACGCCAAAACCCCCCCGCGGCCGGCGAATTCCCCACGCGCGCGGCCTCCCGGCCCGATCGGATCCTCGCCAGGGATTCCGATGGAGAGGTACGAGCTGCTCAAGGAAATCGGCTCCGGCAACTTCGGGGTGGCGCGGCTCATGCGGAACAGGGAGACCAAGGAGCTCGTCGCCATGAAGTACATCCCCCGGGGGCTCAAGATTGACGAGAATGTGGCGAGGGAGATCATAAACCACCGCTCGCTGCGGCACCGCAACATCATCCGCTTCAAGGAGGTCGTGCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCGCCGGCGGCGAGCTCTTCGACCGGATCTGCAGCGCCGGCAGGTTCAGCGAGGATGAGGCGAGGTATTTCTTCCAGCAGCTCATCTGCGGTGTCAGCTACTGCCACTTCATGCAAATTTGCCACCGGGACTTGAAGCTGGAGAACACGCTGCTGGATGGCAGCCCGGCGCCGCGCCTGAAGATCTGCGACTTTGGCTACTCCAAGTCATCACTGCTGCACTCGAAGCCCAAGTCGACGGTCGGAACTCCAGCTTACATTGCTCCAGAGGTGCTCTCACGTCGGGAATATGACGGCAGATGGCAGACGTTTGGTCTTGTGGAGTGACTCTTACGTGATGCTGGTTGGTGCATACCCTTTTGAGGATCCCGATGATCCTAAGAATTTCAGAAAGACGATGGGAGATAGTGTCAATTCATACCAAATACCAGAGTATGTACACATATCCCAAGATGCAGAC | |||||||||