mature miRNA: ATTTGGAACGGAGGGAGTACA species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|198369493|gb|GD035868.1|GD035868 CCHZ18889.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): CTCTGAAAACTGTTCAAAGGCTAGTGACCCCTTCTCAGCAGGAGACGCAGAGCCCCCCTGTTCATCAAGAAATCTCAGTGAATTCTACCCCTTGAGAAGGGGGCCTTCCACTTTGCATTGTGCGTAGTTTTTGTTCTTGCCGTTTGTGTTTCTCCAAAAGTCTCTACAAATGTGGGTGCACCTTGTAGATTGAGCGCCCCAGGTGGTAGACGTCCTGCTGCCGCGATAAGGCCTCCGCGGCAGAATATGTATAGAGCCATCCGTCCATCAAACTGAAATCGGAAGAAGCTGAGTACTCCCTCCATTCCAAACTGAACGTCATTTTGGCAAATCTAGATAGATAATATTTTCTATGCATCTAGATATAAATTATATCCAGTCTTCTAGATATATAGTAGCAAACTATGTGTCTAAATTTGCTAAAACGATCTACAATTTGAAACGGAGGAAGTATGTACCTCATTTTTTATGTCGGGGGTCAATAGTACATCCAACCAGGTGCGAACCCTCTGGAAAGCAGTGAGAGCTCATTGTGCTGACTGTGAAGTGTCTGACTGCTCAAATGGATTGTTGGCTCGCTGCGCAAAAGGCAGCAATATTTGAAAGTTGGAAGTGCTGTAACTTTGTGCAATCAGAACACGTGAATTTAGGATTCATTATTGTGCTGGAAAATTTGTGTCTGTACACATGATTAGATTAGTTGTTTGTTAGCCCGTGCCTTGAACTGAATAAAGCAGACACTATCTGATTCATTGTTCG | |||||||||
gi|198360052|gb|GD026870.1|GD026870 CCHZ13233.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): ACGACAGCCAGTCGTCGTACAATGGCGAACAACGTGAGGATCATCGTCATTCTGCAAAAGAAGCAGGAAGAATAATAAGCACGACACAAGATGATGAGCGGCGCCGCGACGTCTGTTGTGATCACATCCGTGCCCGATCTCGATGGGTACCAATGGAGGAAGTACGGCCAGAAGCAAATCGAAGGTGCCATGTACGCTAGGAGTTACTACAGGTGCACCTGGAGCGCGGAGCAAGGCTGCCCGGCCAAACGGACGGTGCAGCGCAACGACGACGGCGACGATATTCATGGCGGCGGAGGTGCCCCGGCAGAGTACACGGTGGTGTACATGGGGGAGCACACCTGCACGCCCAACGATTCCATGGAGGCGCCGTTCATCCTCGAGACCGCCGCCGCCGCCGCCGTCCCTGTTACATCAGCTGGCGGCTCTTGTTGTTCTAGCACCAGCACCACCACCAGCTGGGCCCCGGCACCGGCTGCTGCGTCGTCGTTGCAGGAGTTCGAGGATTTCACCGGACCAATCCGGTCACCGGTGCACATTGCCGTGGCGGATGGTTGGACGATTGACCACTTCCTGCTTCTGCAGCTAGCTAATGATCAGCCAGTTTCCTATTTCTCTTTTTAGCTACTCTCTCCGTTCTAAATTATTAGTCATTTTAATTTTTTAGATTTATAGACTTTACTATATACTAGTATAGTACTCGTGCATGGCTACCAGTAATATAATAAATATACATAATATCACCAATAAAGTAATATCAAC | |||||||||
gi|198236783|gb|FL949628.1|FL949628 CCGP16466.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP16466 5', mRNA s ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GACGGTTCCGCCGCCCGCTCGCGTTCCTTGCCTCCGCCGCCGCCGCGTCCCTACGACCCTACCTTGCCGCGGCAAGCCGTTGCTTCCTCCCCTTTCTGCCACTCCTTTCCTTCCTCCACTCCACTTTTCTGTTGGCGTCTCCTCCAGTCGAATTGGTTTTCCTTCCCCCAAACCTTAGGGTTTGGATTTCCTCTATTCCTTCCGTTCCAAATTAGCGCGTATTGTGCCGGCGTGCCACTCATGCTTGATGGATGCGACAGGGTCATCCAGTTCTATGTGCCCTACTTGCCTGCCATCCAGCTCTATGGAGACTCCGCTGTCCTGCGGACACCTACTAGCACAACACAAGATGTTTTTTGGTTGAGAGCTGGAATTGTGGATACCCCTGCAGATTTGTTTACCATCGTTCTCCCTTCTGACTGCATACATGTGTGTGTTTCGATGAAATGCATCAGAGAAATATTAGTAGCTAAGGTATGAGCGACTATATTAGAGAAAAAGAGAGCCATACGGGAGGTTGATTAGCTAGCATTGCTTCTGGGGTGATGTTACCATGCGAGATTCCGGGGTCCTGTTTTTCCAGCAGCCTCCATATCTTTTCAAATGAGTACCATGTGTTGGTCCCTCATAATTTTCCTTGTCTGAAGAAGTGGGAAGGGACGACATGCTATTGGAGATGGCAATGTGATACCCTGATGGTGAGACTGACACATGGTGGGA | |||||||||
gi|198181741|gb|FL894880.1|FL894880 CCGN11696.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN1 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GACGAAACTGACGAGCTGAATCAAGGCCTCTGTTGCCTGACAGCCCGCCAGCCGACGCGCATCATCCTCCTCCGGCCGGCCGTCGGCGCAGGCGTCCGCTTCCACCTGCCCACTCTCCCCGTCATCGGTTGTCGTCCGCGCCTCCGCTTCGTCCCGGCTGTCGCCGCCGTCCGCGCCGCCGCTCCCCGTCCGCGCCATCGCTACTCCGTCCCCGGTCGCCGCACCGTCCGCGCCGCCGCCGCGCTGCCGATCCGTCCCCGGCCGCCACGCCGCATCCTCCGCAACCCGACCACTTCAACCCCATCGTTGTCGCCTCCTCTTCCTCAACGCAGGCACCTCCTCCACCTCGACGCAGGCGTTGCCTCCCATCCTCGCTCGAACACTCGGCAGATCAAACAAAGAGAAGATTGGAGCGCTCGCCAAATCACGCTGCCTCCCTTGCTCATCCTCTCTCCTCCCACGATTGGGAACCCAGGCAACAAAAGGTTAACAGCCATTCACCCGGCATCGATGGGGTTTCCATGTTCCGAGCGATGGATGGACCTGTTCCCAGGGAAACGCCCATCCTCAACAAGCTCTTCACCAGCCTGTTAGCAACCCCTTCTCAACGATTCACAGAACAGCTTGATTCAATTACAGTCGGAGTACACAACCTGAGGGGAAGGGAGGTTAGAGATCAGCAGAGCAATCTACTCCCTCCGTTCCTAAATAAATACATTTTATGATTGAACACGCAAACCAATGGTAGTGTTAAATTATAAAAGTACCATTTGTATTTGGATGAGTGGATGAAGTGTAGTGTCTTTTGGAA | |||||||||
gi|198176938|gb|FL890385.1|FL890385 CCGN8843.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN88 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TCCTGGCCGCGGCGTCAAGGGCGTCGGCGGCCAGCCCGTGGAGCTGTCCGCCAGGGTGCCGCTCTGCGCGGGTCCTCGCGCCCCGCGGAGGCCGCCGCGGGGCTCCACGGCGGGTACGGCCCGGTGGCCGCGATGTTCGCGCGGCGCGGGTGCACGGTGATCGCGTGCGGCGTGGGGGCGCGGCTCGACCCCCCCGCGGAGGAGGCCCTGGCGCGGGTCAAGGGCGCCTGCGCGGAGCACGGCGCGCGGCTCGCCGCGGAGAGCGCGCCGCTCGCCGTGGCGCGCGACGGCGCGGTGTCCGCGGGCGTCTGGCTGTCCGCCGGGCGCACCCGGCCGCGGCAGTTCACGTACCAGCGGATGGGCGCGGACTTCTTCTCGCCGGGCCACTGGCCGCTGTTCGTGCAGTTCGTGCGCGCGCTGGAGTGCCCCGAGGAGGCCCACGCGGACGACCTTCCCGGCGGCGAGCGGCTCACCGTACCGTCCGCCTCCGCCGCGCAGGAAGATGCCAGGGCAGTGCAGACCGTGTGAATGGACACGGCATTAATCGTAACTCCTCGATGTACAAATGCAGTATAGCACTACTGCAATGGTAGTTGTATTTTAGTAGTGCTCCATTCAGTAGGATTAAGCAGTAAGTACATTTTAGCTGCGAGATGAGATGAGTTGATCCTTTGTATCAGTGGGAACCAAGAGCAGGAGTGTACCACTATATTGTACTCCCTCCGTTTTAAATTATAAGTCGTTTGATTTTTTT | |||||||||
gi|197987490|gb|FL730784.1|FL730784 CCGB11650.g2 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB11650 3', ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): AGCTCCACTGCGATCTCGTGAGTCGTGACCCATGAACAGGACGTGTTCACTCCACTGTGATCTCGTGACCCGTGGGTCTGTGAATATCAGTACTAGTAGCAGGCTAGCAGCTTGGCACTGCGACGAGCAGGAGCGCGCGGCCTGGGTTTCGTCCTCCTCCCTTCCGTCCTCCCGTCCAGCTAGCAAACCCAATCCCCGTCGTGCGCATCATTCCTTCCTCCGTTTAACCGCAAGGGTTCTTGTTTATTCGAGGCAAGAAGTTCGCGACTCACGGTTGATTTTCTGTATATGCTGATGTGATATCTTCAGTGTTCATTCAGGCAGAGGGAATGGCCTCGGATGCAGCTCCCAAGGGTAAATCGCCGGTGACCTCCTCCGCGGCGGACGGACCTGATGATGATCAGCTCCAGCCCGGGACCCTCCCTCTCCTGGGGAAGCCGTACTTCGCGTGCATCATGTGCAAGTCCCATGTCCGCCCGCCGTTCCAAGTGGTGGTCCCCAGGTCGCTGGCGCCGTTCCTCCCGGCGGCCACGGCGCCCGCGACGGTGGCGTGGC | |||||||||
gi|197989340|gb|FL728813.1|FL728813 CCGB10149.g1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB10149 3', ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): ACAGAGAGAGAGAGAGAGAGGGAGGGAAGCAGCGATGCCGACGGGTAGGCTGAGCGGCAACATCACCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAAGGCGGCGGACCTCAAGTCGGCGAAGGCGGTGAACCAGGCGCTGCGCTCGGGCGCGGCCGTGGAGACGGTGCGGAAGTCGGCGGCGGGCACGAACAAGCACGCCGCGGCGCCGGCGGCGCCCGCGCGGAAGCTGGACGAGACGACGGAGCCCGCGGCGGTGGAGCGGGTGGCCGCGGAGGTGCGCGCGGCGATCCAGCGGGCGCGCGTGGCCAAGGGGTGGAGCCAGGCGGAGCTGGCGAAGCGCATCAGCGAGCGCGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAGGGCGGCGCCCGCGCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAGGGGCGTCGGCGCGCCCCTGGCGGCCGGCGGCGGCAAGTGATGCGGTGGCCCTGTGCAGACCGGAACGTCGATAGCTTAACTTCTTTCGGCCCGTGGAGGAGGATGCGAATCGGCGGTGAATGATGTGTAGTTTGTTTGTGTTGATCTGATCGGCTTGGAAGATTTGGAGAATGTAAATCAGTAGTGACGCATTCGCAAGTGATTTCTAGAAATCTATTGGTGCTAAACCGGAAATTGATACTCCCTCCGTTTCAAAATAATTGCACATCTCGCATTTCGAGGAGTC | |||||||||
gi|304452391|gb|HO251623.1|HO251623 CCTW5238.g1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW5 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): ATTTACCCAAAAAAATCCACCTTTCATGGGTTCGTGTAGGGATGGATCCTAGCTTGCCTGTCGAGTTGTGATTCAGGTTCCTGGATATGTCGAGCAGCTGGTGAAGAGTATCATGTCACTATTTCTGAAATTGGATATTTCTAAAGCCTTCGATTCAGTTTCATGGTCGTTCCTCCTGGAAGTACTCTCCCATTTGGGTTTTGGTATGACTTGGTGCAATCTGATTTCGAATTTGCCATCCACTTCTTCCACTCGTGTCATGCTAAATGGGGTACCAGGAGATCTTATTCAGCATCAGTGTGGACTCCGGCAAGGCGATCCTTTATGGATGTGCTTAATAGCCTCTTCGTCAAAGCTGGGGAGGATGGGCTTCTACAATCCCTCTCCCCAAGGATTTCTGGACAGTGACTGTCTCTGTATGCCGATGATGTTGCTCTCTTTATAAGGCCAGTTGATGATGAACTACAAGTTACAAAAGAAATTCTTAATGCTTTTGGTATGGCGTCCGGGTTGCAAACTAACCTTCACAAGAGTAGCATTATCCCCATCCGTTGTGAAAATGTCTCACTATTGCCTGTTAGAGACACCTTGCCTTGTACTCCCTCCGTTCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAATTTTCTAAGTTTGACCAAATTTATACAATAAGATAATAATATTTACGATACCAATTAAGTATCATTAGATTCTTTGTTAGTTATATTTTTATAGTATACTTATTTGATGTTATAAATCTTTGTGTTTCTCTCC | |||||||||
gi|304512552|gb|HO312547.1|HO312547 CFHA2648.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2648 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GCCCCATCAAATCAGCTCGCTACTCAACCTGACCCGCCTCTGCATTGGACTTCGTGGTGAAGTAAGCAAGGAAGGAATAAATATCCTAGCAAGTTTACCCATCCTATCCTCTCTTACCGTAACCTTATTTGATGACAAAGAGGGAGATTCAGCCATCTTCCACCCAAGGCATGCAATCAGCAGTCAAGGTTTCCAGCTCTTGGTCAAGTTTACGTTATTCTATTACTCTGAGGCAGCGTTGTAATTTGAGCCAGGAGCCATGCCAAAGCTCCAAAGGCTCAAGCTGCGACTCCCGGCACGGTGCCAATTCAAGTATGGGGACGGTGGCCTGGTCCTTGGGCTGCAGAATCTGGCAGGCCTCAAACATGTCGCTCTCAGTATTAACTGCGAAGCTGCTACTGCTGATGAGGTTGATTCTTTGGAGGATGACATCAGGGGTGCAGCATGCCTCCATCATAACCGTCCCATAGTCCATGTCCATAGAATGTATCAAGATTCCATGGCGCACGGGTGCTGCAGGCGACCATCTAGCTATCCCACACTTGAAGCACCATGACCATGAATGCATGATGTGGAAAATAAATATCAATATCAGCAATCATCTATTCTCTGTTTCAACCCCCTAGGGAGCATAAACTGATTGTCACAATTGGTGCCGTAGCTTTAGTTTGTATTTTCTGATAAAGAGATATCTATTTCACATACTCCCTCCTTTCCAAATATAAGTCATTTAGGTCATTTAGATTTATAGTATTTACTATGTACTTAGACATAACACTACAGAAACCATTTAATCTGTGATGATTTT | |||||||||
gi|198344630|gb|GD010882.1|GD010882 CCHZ4017.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GACTTCCTCATTCCATTCTCTCCCGCAGCCTTGGCCGCCGCCAGGCACCTGATGCAAGCAGGCCACCGGCCCCCTCCCATCTTCGGCGGCAGTGTCTCTCCGAGCTCCGGCCCTCCGCCCCCCTCTCCGGCAAGCCCCTGCCAAAGCCATCATCTGTCTCCCTTACACGGGGCGCGCGTTCGACAGGCACCCCTGTTCTGCGCATCCAAGGTAGCAGGGTCGCAGGGGGGCCGGTCAAGCTGCGAGGCAGCCGGCGGCGCCACCTCCGTTGTCCGCTCTGTGGCAGGTTGCAGCCCGCAAGGTAGCTGGCAATACCTATGTCAGTCGTCAGATCCGGTAGTAGATCTCAGCCTGGCAGCATTTTCAGATTGATGTTTGCTTTATACGTGGCAAGCCCATGGATGTAACAGATGCATCTTCATCACGGAGCTAGCAACAGGGCGCCAGATGCGGGCAACAATGATGACATGAAGCTGAAACTGTGAAGCAAGTGCACAACAAGACATAAAAAAATTCAAAGAAACGAACAATATTAGTGGCTGATTCACCAGACATGTTTGTAACTTGTTACTTGTGATGTACTCTCTCCGTTTCAAATTATAAGTAAATTC | |||||||||
gi|198105800|gb|FL834091.1|FL834091 CCGH18235.b1 CCGH Panicum virgatum late flowering buds + seed development (L) Panicum virgat ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TGCAGGCATCAAGAGCTAGGCTTTTCAAGGAGTACAAGGAGGTGCAGCGAGAGAAATCAGCTGACCCTGATATTCAGTTGATATGTGATGATTCAAACATATTCAAGTGGACTGCTCTCATCAAGGGACCCTCGGAGACTCCTTATGAAGGTGGTATCTTCCAGCTTGCCTTTGCTATTCCAGAGCAATACCCTCTGCTACCTCCCCAAGTTCGCTTCCTGACTAAAATTTTCCATCCAAATGTTCATTTCAAGACTGGTGAAATTTGCTTGGATATCTTGAAGAATGCATGGAGCCCTGCATGGACCCTCCAATCAGTTTGTAGAGCCATAATTGCACTGATGGCTCATCCAGAGCCAGACAGCCCACTTAACTGTGACTCAGGCAATCTCCTACGATCTGGCGACATCAGAGGTTTTCAGTCAATGGCAAGAATGTACACAAAGCTTGCTGCGATGCCAAAGAAAAACTAATAAAGTTAAATGGAACATGTGGAGCCCATGGGGGCATGCCTTCATCATAGCTGTGATGCTGTTGTCATCTGTGTCTGGAGTTGTGATGTATCTGTTTACTGACTGTGTTTGACTTGGTATAAGAATCCATTTGCAACTGATCTACTGTAATAGCTTTGGTCTCCTCACCTCACATCTTTGTACACCCTCCGTTCAAAATTGTACGCCGTTTTAGCAAATCTGGATGCATAGTTTTTTTTCTATGTATCTATACATAACATTTAACATT | |||||||||
gi|198317366|gb|FL985158.1|FL985158 CCHY18137.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY18137 5', mRNA ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GACATCTGCAGTGGAGTGGAGACTTCGCAGACCCAGAAGAAAAGGGCGGAGGAGATGGAATAAAAAAAGAGTGAGCAGGAGGAGCGCGCACACACCAAGCAAAGGAAGAGAAGTGCAGAGGAGAATTCATTCAGATCAAACCAAGGAATATTTTGGTGCAACAACTTGATATAGAGTTCAAGACCAAGGAAGCAATGGAAAGGGTGGCGGTAGTAGCAGTAGGAAAAAAAAGAAAGGAAAGAAACACTGGTAAGTGATGCGATGCAGGTTGGTTCTGGCGATAACAACTGGGGGCAGAGATGAAAAGGAAACAGAATAAAAAATTTTGATTATGGAATACAACTCTGAAAAGTTGGTCCCGACTTGATGGTCGGCAACCTCGGAGCTCCACTGAAAATCCCGGTTCCAACATGTAAGAGTGTTGGCGGATCATTAATCTATCGCCGTGACCATTGGGACCTTGCTTGTGACATGTTGCAAAAAAGCTACAATTGAAATGCAAAATGCATGTATATATATTATTAAGATTATACTTCCTCCGTTCCAATTGTAGACCATTTTGTCAAATCTAGATATATATATATAGTTATTTCTACTCTCACAGATACATACTATGTCCGAATACATAGCAAAAACTATGCATTTAGATTTGATGGAACAATCTACAATTTGGAATGGAAAGAGTATACGTTCATGTGTGC | |||||||||
gi|197965444|gb|FL711513.1|FL711513 CCGA14173.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA14173 3', ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): ATTCCACGAAACCAGCTACTGAAAAGCCCAACCCCAAACAAGGAATTGGTATGCTATCATGGAGCAGTGACAGCCACTATTTCTTCACCCGGAACGACAACATGCCAACTGCTCTTTGGATATGGGATATTTGTCGCCTTGAGCTTGCAGCAGTGCTTGTGCAGAAAGACCCAATCCGTGCTGCCGCTTGGGACCCTACCTGCACACGCCTCGTTCTGTGCACGGAGAGCTCTCACCTGTACATGTGGACACCGTCTGGTGCCTGCTGTGTGAATATCCCCTTGCCGAATTTCCGGATCGTCGACTTGAAGTGGAATTCAGATGGGAGCTGCCTACTCCTGAAGGACCGTGAGTTTTTCTGCTGTGCTGCAATTGTATCTGCCCTGCCTGAGGAAGGACCTGATCAATCTGATGAAAGTTCTGAAGATGATGAATGATCTCTTCGTATGCGTTGCTTCTGCATAGTGGAACTGGAGCCAGCAGTGGAGAGAGCTACGTTGTATGACATACTAGCAGTAGGTGAATTTGGGGCGCCAACTTACTGTAATCGGTGTAGGCGGAAAGATGAATGCTTCTTTCATCTCTAAACTCCTCGGACAGATGATGCTACCATTCTACTCCCTCCGTTCCAAATTGTAGGTCGTTTTTAACAAATCTAAATACATAATTTTTACTATGCATCT | |||||||||
gi|304476326|gb|HO278980.1|HO278980 CCTZ784.b1 CCTZ Panicum virgatum Pathfinder normalized leaf Panicum virgatum cDNA clone CCTZ ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TGCTACCTCTGCCATAAGTTCCAATCCTAGCAACTGCACATGGTAATTCTAGAAAGGATAAATGTGGAAGTAAAGCGCAATAAATAATATTGAAGATAAATGAAATAAAAAATGTGAACTCCCGGAACTGTAATTTTTACCGAGGTACTCCCTCCGTTCCAAATTATAAGTCACTCCAAGAATCTTGGAGAGTCAAAATTTTTCAAGTTTGACCAAATTTATATGATAAGCTAATAACATTTATGATACCAATTAAGTATTATTAGATTCTTTGTTAGCTATATTTTCATAGTGCACCTATTTGATGTCACAAATCTTTATATTTTTGTCTATAATTTTGGTCAAATTTTAAGATGGTTTGACTCTTTAAAATTCCTAGAATGACTTTAATTTAGAACGGAGTGAGTATTAGAAAGCAGTGCAGGGCGCGCTCGCTCGGGCGGGCTTCTTCCACAGCATCGCCGACACGCACGTCGCGCACCACCACTTCCCGGACATCCCCCAGACTACCACGCCGTGGAGGCCGCCCGGAACATCTGCCCCGTCGTCGGCGAGTACTACCGCTTCGACCCCACGCCCTTCGCCGAGGCGGCATGGCGGGAGGTCAAAAGGAGTGCATCTACGTCGAGCCCGACGAGGACGGACGCAAGGCCCGCGTCTTCTGGTACAGCAACAAGTTCTAGCAGAATAATGTTTTCAGATGCTGCAATAGTGAATGTTGATCTGTTCAACAGAGAAAATTACCAATCTAATTATATAGTACTGCATGCTTACTAGATATG | |||||||||
gi|197954350|gb|FL699379.1|FL699379 CCGA6275.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA6275 5', m ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GGTCCAGTCCTCTAGATGGCTCCTCCCCATCAGTCGGAGAACTCAGCGCCGGCCACGGTGACGACGGTGGACGTGACGGCAGCGAGGGACCTTATCGCGGCTGCCGGCGGCCACCGCTACCTGGATGTGAGGACGGAGGAGGAGCTGAGCAAGCTGGGGCACCTGGTGGAGGTGGACAGGTCCATCAACGTGCCCTACATGTTCATCCCCTCACAAGGCAAGCAACAATTAATCAGCGTGCATCTACCTACTACTCCATCCATTCTATACTATAATATTATATATAAGTTATTTTAATTCTCTTCGGATACACACAGAGCACTTAAAACTATATACATACACACACTATATCTAGACAACTGGTAAAAATATAATATATAATTTGAAAAAGTACTAAAATCACACTGCTACATCATTCATTCAGTTGCTAGCTTATCATGCTACCAGCAGCTATAAGTTGATGCATGCCATACATTATGTAGGCCCGTTTAACATAGCTTATTTTAGCATTAGTTTACTCCCTCCGTTCCAGGATACAAGGCGTGATCAAATTTGACACGAACTTCAATAATAATATTTGACTCTAAATGTCTTCTATAATATAATATTTGTAGCAACAAAATTATAATTATATGAACTAATTTTAGATATGAATACAATGATATAATTTTTATTATACAAGATTAATCATTAAAGTTTGAATCTTCAATAAG | |||||||||
gi|197951618|gb|FL693046.1|FL693046 CCGA3028.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA3028 3', m ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GATTATGCGATGTCATTCATCAAGGGGAGGTCACTTAAGCCATTTGGGCGCTGTGGTGGGATGAGACAGTTCCTACCGTTGTGACCAGAGCAGAGCCTCATAACCAGATTATATTGCATCCGACTCAGGCAAGAGTCCTTACAGTCCGGGAGAATGCAAAGATTGCAGGGCTTCCCTGATTACTACCGATTGTTTGGTCCGATCAAGGAAAAGTACATTCAAGTCGGCAACGCAGTGGCTGTCCCTGTTGCCCGGGCACTGGGCTACTGTCTGGGGCAAGCGTTCCTGGGTGAATTAGAGGGGAGCGGCCCACTGTATGAGCTGCCTGCAAGCTTCACCTCTGTGACGCGCGTGGCACATGCGAGGGCTTCCCCTGTCAGCACTCCTTCTGGGGAGGTGATTGAGCAGTAAAAAGCAGAACTGAGCCAGGAAAGACCAGGAGCAACACTTGTTGGGTTCGATTTGGGTCCATCCAAGAGCATGCTAATAATTATGTCATCTTGTTCTACTTCTTAAGATTGGATTGATGAATGTTGGCACGGTGACACTCGAGCTTGAGTGCTTGTTGTACTGTATGGTGCGGTGTGAAAACATTCATCGGTGTAGTTGTAGGAGACCCTTCTCATGTATTAATTGAGAAGTCTGCTGGTTTGATGCTTTGTATCATGTATGTGTATTCAGAGCAACCATTGATCTAATTGTTTGATGTAAGGAGAACCAATTGTGTTCAATGCAAGTAATATACTCCCTCCATTCCAAATT | |||||||||
gi|198349865|gb|GD015109.1|GD015109 CCHZ6201.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): AGCGATCAAACCTCGCCTGGCTGTTTATGCCCAACTACCAACAGAGGACTTCAAGAAGGATTTGGAAGAGTGTCAGCAGTTGGAGCCCCCAGACGCTGTGAATCTTGAGTTTGACAGCACAGCTTAGTTCCGACTGAGCCAAATTGATTTTTCACAGGACAGCTTTACGACATGGGCTGGCAGCAAGATGATTGACGACTGATGCTGCTCCGACGCACTCCCAGGCCAGTGCCATTTTGTATATGAAGGAAGAGCTGATCCCTTTTGCGTGATACGACAGTGAACTGTGCACCAACGGTAGTTTCAACTTTGTGGTGATCGGTGAAGTGCTTATTTTGTCAGGGAGACCTGAATGAAATCAGCTGGCTCGTTTAGGTTCCCCCTCATGCGTATGAATTGTACTTCCTCCGTCCCAAATTTGGAACGGAGGGAGTAGCACATATATATACCATAGGCTAAAGGACTCATACTGTGCCGACAGCTGAGTACTGTTAAAATTATCTTTGGCTGCATGAGCTTGTAAATTACGATTAGTATCCTCATTTTAGTTGGTTGTCTC | |||||||||
gi|198170292|gb|FL884000.1|FL884000 CCGN5493.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN54 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GCTGTCCTCCTCCTCGCTCTCGCGTCCCCGCCGCGCTACCGCTCCGCCGGCAGCTGCGTCACGTCCTCCTCCTCGGAGGGCGAGAGCCAGGCCGGCGCCGGGTCCAAGAGGCCGTGCACGTGCGCCGCCGCCGAGCAGCCGGTGCAGGGCAGCAAGAGGACCTTCCTGCAGAGCCACGAGGAAGGGGAAGCAGACGCAGACGAAGACGCAGAAGCAGAGGACGGCAGCTCAGCAGAGATCGATCTCAACAGGTAGGGGGAGAACAGAAGACGATCGCCATCAGAAGCATCTCTGCTGCATGTGCCGAGCATCGGGAACAGGGGATGATTGGTGGTGTGGCCTCCAAGGTTGGGACCAGGCTTTTCAGCAATGTCTGATGCTGCTGCAACGGCTGGTGATGCTACACTGCTAGCCTGCAGCAACCACACTGCTCTCCATTCCACAATATGATACATCTATATTTTAATTTATGCATATGGTTCTTGTGTTTCATGTACCTCTGTAAAAAAAAACAAAGCTGTGACTGGAACTAGAGGCAGGCCCAGCTGCAGATGAGGCACATGCAGGATGCTTGAGGTGCAATGCAAGGATGCATGTATAGTTATAGAACTGTGGTACTCCCTCCGCTCCAAATTATAAGTCATTCCAAAAATCTTGGAGAGTCAAAGTTTTTCAAGTTTGACTAAACTTATATAACAAAATAATAAGATTTATGATACCAATTAAAA | |||||||||
gi|304448893|gb|HO244616.1|HO244616 CCTW1351.b1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW1 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): ATTTCATCCAACGGGCACGAGAGATTTTTGACAAGTTTTTACATGAAAGGCAACAAAATATCAGTTCAGACGTACTCCCTCCGTTCTAAAATAAGTGCACAATTAAAATTTAAAATTTATCAAAAAAATACTACTTTGATCCAACTATTATAATAAATAAAAGTTTCCGTAGTTTTTTTACAAAAGAGATAAAACACTCTTTTTATAAAAAATAAAAAAGTATTTTAGTAATTTTATATGTATTGATTTGCGTGTCTAATTAATTTGTGTGTTTAGTCATAGAGTTGTATTTATTTTGAGACGAAGGGAGTACATCCGAGGGGCGATGTCCCGAACGAGCCAATCGAATACGTCGAGGAGCCCCTCGCCGGTGTAGGCGCTGCAGCCAACGATCTTCCAGTGCCTGTCCATCACCTCCAGATTCAGAACCTGGACACGAAGGCACGCGAGTCAGCTTGTAGATGTATACAGCCAAAGACCTAGCACTGCACCTGACCGATACTTCGTAGATGGATGAAATCAAAATTTGAGGCAGTGTAACAAGTCCCAGGACCAGTATCTTAAGGCAAATGACTGGAAAACACCATCACTCGGTGTCAACATTAGCTAAATGCAGAGTAAAGCAATTGCTGCCGAGACAGGGACTGCATAACGCTGAAAATGGTCCAAGCCTTTTATTTGTACAGCAAAGATATTCCTTTTATTTGTACAGCAAAGATATTCCTTCCCCAATTATGCCACTCAATTGCTAGCGAGTAGCGACCCTACTTCCTAT | |||||||||
gi|198324243|gb|FL991982.1|FL991982 CCHY21668.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY21668 3', mRNA ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GGAACTGCGACACATTCCTCCCCATTATGGAGATTTAAGTGAAGACTATTCTAGCATGAATGGGGCCCACCAAGATGGATTTGGCAAGCTCCATGATCACTGCGACGTACGCCGAGAAAAAACTCTCCTTTTGCTGGTTTGTCAATTCTTTTAGTTGTACCTTCATGATGCCCCAGCTAATTCTTTTATATTGGTAAACAACCTGTTACCCAGCTTTTCCAGGCTCAGCAAAGACACAGTCACATGGTGTTGCAATGGACAACTACTATTCGACATATCATACTACCCCAGATAGGAGGAAATTCTCGGAAGAGGAATACAAAGCATTCACCAGAGAGGAGACAAGGAAAGCCATGAAACAACTTGTGTCCTCACCGGATTTCAACAGGTGGGCCTTGGCTAATGCAGACAGGATATCTGTGACTCCCCCGGGAGGCAGCTACAGCAGCAGCAGAAGCAGCCGCCAGCAGGGGCATCGTTTCTTCGGATTGTTTTGAGTCGTGCATGTAGTGTGCTTGCAGTTATAGGAGTGATTCCATGTGTATCAAGGATAGGATAGCAGCTGAGTGCTGCCACGTTTTGAAGTGGCAGCAAATTTGTAGAATATTGTGTAGTTTAGTCACCACTTAGCTCCAAACGGCTAGTGTATCATGTACTCCTTCCGTCCCAAAATACTAGTCATCCTGGGATTCAAAATTTATCCCAAAAAAATAAGTCACCCTACCCTATTTG | |||||||||
gi|198144412|gb|FL864662.1|FL864662 CCGI8542.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI85 ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GAACAAGCTTGCAGCGTTACTCTTCAACATAACACCGGCAGCTCATCATAACTTACTTAATAACAAGTACTCCTTCCGTTCCAAAATGTAGTCGTTTTGGCTTTTCTAGATTCATAGTGTTTGCTATGCATCTAGATATAACAAAACGACCTACATTATAGAACAGAGGGAGTAGTTCACTGATTACAACTGAGACTTTTCTAATTTCTGATTCAAACCTCCTCCTTCCCTCCATATCCATATCCTACACCTACATCCTTCGCCCCAAACCCCTCGTTGAGTTCAATTCACCATCCATACAAGAGAAGAGTAAACCACTACTAATAACATCACAAGTCAACGACTACCAACAACTACTAGCATGAACAGCAGTTAAACACCGGAGTAAGTAAGCATAAACACATTGCCCACAGAGGAGAAGCGGAGCAGCCGTCATCAATCCTCTTCCATAGCCGTGGAGGCTGGGGAGAGCCTCGCCTTCTTGTGCTGTTGCTGCTTGCCGAGGAAAGCCTCGAGGAAGAGCTGCTGCGCGTCGAGCATCGACTGGGTGCGCTTCATCTCAGATTCCATCCGTTCCTTCTCCATCTGGAGGGACAGCTCCAGCCTGCGCTCCTCCATCCGCAGGAACCTCTCCCCGACGGCCCGCAGCGCGTCGGCCACCTCCGCCATGGCCTCTGACTCGGCGTCGTCCTCTCCGTGGTTCCTCTCCGGATTGAAAGCAGCCACCGCGGCGGGTCTAGAGCGGGAGGCCTTGGGGATGGT | |||||||||
gi|198307793|gb|FL976112.1|FL976112 CCHY13169.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY13169 3', mRNA ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): CAATTTATCAGAATTTGATTACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAGGGAACTCTTCTCCACTTATGTGATGACGTGATACAACAAGAAGTTAAAGAGGTCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCAACTATACAAGATCTTGATTTACGCTGCGAAGAGCTAATCAAGGAAGAGTTTGGTGCAGAGTGCAACTTTGATGTTCATGATGCTATCAAGAAGTTAGAGAAGCTTAGCATTGTTCATCGGGACTCGATTGGAAGGATCGTATGCGTTCCCTTGAAGCGTGCGAATGAGATCATTGGCACCACGACCGAAGAACTGGTGATGCGAGCCCAGCAGAGCCCTGCTTCTTAAGTTCGACGTTGCGATGGATTGTACCTCCCATATATGTGTACATCACACATCTAAAAGCAAGCCTCTGTTGCCCTCCAAAAAAAAAATAAATAAAGCAAGCCTCTGTTCATCTTGCAAGTTTGTTCGCTTGTACATGTGTATCTGTACCCACACCAGCTCATAGATTCATAGTTAGGCACTGTTTTTCCCTTACTGAAGAGTTATCAAGACTAGAGTGTACTTTGAAGTTTTCTGTTTCAGTTGAAGAATGGTGTTACATTTTCTGTGTACATATCAGATATCACACAATCATATGTACTCCTCCCGTCCCAAATTACAATTCATTTTGGTTTTATT | |||||||||
gi|198019271|gb|FL766703.1|FL766703 CCGC13758.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virga ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GCGCCTGTGGTGGGATGAGACAGTTCCTACCGTTGTGACCAGAGCAGAGCCTCATAACCAGGCTATATTGCATCCGACTCAGTCAAGAGTCCTTACAGTCCGGGAGAACGCAAGGTTGCAGGGCTTCCCTGATTACTACCGATTGTTTGGTCCGATCAAGGAAAAGTACATTCAAGTCGGCAATGCAGTGGCTGTCCCTGTTGCCCGGGCACTGGGCTCCTGTCTGGGGCAAGCGTTCCTGGGTGAATCAGAGGGGAGCGGCCCACTGTATGAGCTGCCTGCAAGTTTCACCTCTGTGGCGCGTGTGGCTCATGCGAGGGCTTCCTCTGTTAGCACTCCTGCAGGGGAGGTGATTGAGCAGTAAAAAGAAAGCAGAACTGAGCAAGGAAAGACCAGAGCAAGTCTGGTTGGGTTTGATTTGGGTCCATCCAAGAGCATGCTACTAATAATCAAGCCATCTTGTTCTAGTTCGTAAGATTGGATTGATGAATGTAGGCATGGCGGCAGTCGAGTTGGAGTGCTTGTTGTACTGTATGGTGCGGTGTCAAAACATTAATTGGTGGAGACCCTTCTCATGTCTTCTCAATTGAGCAGTCTGCTGATTTGATGCTGTGTATATGTATGTGTATTCAGACCAACCATTCATCTAATTGATCGATGTAAGGAGAACCAACTGATGTGTAATTGTGTTCAATGCAAGTAATGTACTTCCTCCGTTCCAAATT | |||||||||
gi|304476975|gb|HO276264.1|HO276264 CCTZ4168.g1 CCTZ Panicum virgatum Pathfinder normalized leaf Panicum virgatum cDNA clone CCT ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TGAGGAGTTGCAGTAGTACGAGGAAGGTTTTCTTACTTGATACCAGCGACTACGCAATGAGGCAACCTTGCCTGCCATCTTGCCCTTGTCTTTTGGAAGAGTCACAGGATTGATGATATATCTCTCAATTCACTTGAAGAAGTAGAAATCACTTCCTGTACAAGTTATCATGGGGCACTGGAATTTGTGGTGCAACTGTCCAGATGCAATGCAGCAATCCTGAAAAAGGTTGTCCAGAAATATAGGATGGACTCTGCTCCTCCACCAACAAAGGAGGTATGTGAGAAAATCCGCGGCATGTGGCAGCCAAATATTGAAGTCGAATTCTATGTGTTTTCAGATCGGAATTGGGTGCGTTAGTATTGAATAAATAACCCGCAAAAAAGTATTGAATAAATAAAGACCGTGATGAACAAACTGTAATGGTCTTAGTTTCTGCTCACTTGAATCTGTCTAGGAGTGTAGGATTGTTGCTGGCTTTACCAGCATTCAGTTCAAATTTAGGGTTTGATCTGTTAATCCTGTTGTTAGTTGTTGGGCATTGATCTTCTGTATTTTAGTTGATGTTTCTGTTCCTTTAAAATCGGCCAGACTTCGGAAACTTTCTTATGTTTTACTCCCTCCGTTCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAACTATCTCAAAGTTTGACCAAAATTATAGAGAGAAATATAAAAATTTATG | |||||||||
gi|198079767|gb|FL807101.1|FL807101 CCGG648.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatum ATTTGGAACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TCGCTGCGTCGAGGAGATCGACGGCGCCGTCCGGCTCTTCAACCGGCGGCTCGTCGGCCTCGTCGACCGCTTCAACGCGCTCCCCGGCGCGCACTTCACTACGTCGACGTGTACGGCATCTTCGAGGACCTCATGCGCTCCCCCGGCGCGCACGGGCTCAGGGTCACCAACGCCGGGTGCTGCGGGGTGGGCAGGAACAACGGGCAGGTGACGTGCCTCCCGTTCCAGACGCCCTGCGCCAACCGCCACGAGTACCTCTTCTGGGACGCCTTCCACCCGACGGAGGCGGCCAACGTCCTCGTCGGCCAGCGGATATACAGCGCCAGGCTCGCCTCCGACGTCCACCCCGTCGACATCCGGACGCTCGCGCGGCTCTAGATCGAGCTGCAGGGCCAGGGCCCGCCGTGTCAGCCGCAGAGCTTATGTATATCGATCATATATAGGCTTCGGTTTCTTCTATCTGTGAATTAGTTGTGTGGGACAGATACATACCATCGTGTGGGCGTGACCCAAAAGGGTTCTTCTTGGGGTACGACGTGCACAGCGTATAGGCGAACTGCAAATTTATGGTACTCCATCCGTTCCAAATTATAAATCATTCT | |||||||||
gi|304532073|gb|HO330006.1|HO330006 CFHC1604.b1 CFHC Panicum virgatum U518 normalized leaf Panicum virgatum cDNA clone CFHC1604 ATTTGGAACGGAGGGAGTACA |