| mature miRNA: CTTTTGTCCCGGTTGGTGGCT species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198201641|gb|FL918541.1|FL918541 CCGO11833.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO11833 5', mRNA s CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): ACCTAATGTGTAAAATAGCGTATGGTTATACACACTGTAATCACCACTTGCAAGAACGCACACTATACATGCACGTCCCACTCCCAATCGACCTGATCGCAAACACTGTACAAACACATTAACAGAGCACAAGTACAGGACACAAACAAAAAATAAAAACCTGAAGGATCAGCACTCGATGCCTTTCTTTGTCCCGATTCTTTGTTCTCATCTCAGTCCTTCAGTCTTCAGAAGGCGTCGCCTGCGCCCCCCTCGCGATCGGGCACCCTGTACGAGTACCCGAGATCGTCGGATTGCCGCCGGATGATGCTGGCCCGCTGCATCAGCCGCACCAGTTGCTGCACCACCTCGGACATGGGCGGGCCGGAACTCCGGCTCCGACTGGACGCAGATCGCGATGATGTCAGCGAAGCGGGAGAGCGATTTCGCAGGGTAGAGCCCGTCCATGGCCGGGATCCACCATCCTGGCGAGCAGGTCGATGTCGTGGAGCTGCGGGGTCGCCCACCGGGACAAGGGACTGCTCGGACCTCTCCCTGGAGCTATCCAGCGGCTTGCGGCCGGTCAGCAGCTCCAGCATCACCACTCCGAAGCTGTACACGTCGCTCTTGGTGGTGTACGTTCCTGACATGGCGAACTCGGGGGCGCTGTACCCGAACGAGCCAACCATCTCAGCTGAAAACCTCCCTCTCAGGGATTTGGGTGAGAGAGCAGCAAGCCCGCAGTCAGAACAGGTGCGGGCTGTACTCCCTCAT | |||||||||
gi|304518700|gb|HO318085.1|HO318085 CFHA5640.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA5640 CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): GGCCTCTGAAGCAGTCAGCGGTTTTTCCGGCAGCATCACTGAAGGAGAGGGAAGCTGCATATCGGGCTGCCCGTGAGCGAATCTTCTCTGGAGATGATGCCAAGGGAAATGATAAATCATATGTGAAATGTACACAGGTCCCTGTTGTTGCTCAACGGATGATTGCACATGCACTTGGTCAAAAAGTTCAAAATCCCACAGAGACAGTTGCCTCCAAAGAAGGCAGAGGAAAACAGCTGCCGAACGGGCCAAAAGTTCTGACACGTAGCAGGAGCAACTTCTACGCAGTTGCACCAGATAATGGAGAAAAGAATAGTGTTCGAATCGGTAAGCCAAACTCTGCTAGTAGGAATTCATATCAAACTTCATCCAGCCAAAGGTGCCGCACTGCTAATGGTAGAGCTGCTACCGCTGAGAGCTTGAAGAAAGAGCAGACTGGAGCAGCTAGAAGAATGTTTGCACATGCACTGGGGCTGTCTGCATCTCAAGGAGGTTATGGTGCACTACCTAAACCGAAGTAAAGATCCGGAGATGAGATGCCAGGAATTGGAGAAGCTTCCCAATGCATGCTGTGCCTGCACTCTTTATCCAGTCATGCATATGGCGTGGGATGTATCTGTGATGGTGCCCTTTTGAGCCCATCTGCTGCTTATATGTTAGTCTTCTTGGTTGGATGTTGACGGTTGGATGTTGACTATTGGGAACGACAGA | |||||||||
gi|169681432|gb|FE609710.1|FE609710 CBYX8686.b1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX8686 5', mRN CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): AATAATTTTATCTATTACTAAATTTTTTAACACTGGAAAACCCTCGTTTTACCACTTTTTTCATTGTTACATACCAAACATTCTTACTGCTCCTTTATGGGGACAGTTAGAGGATATGGGATAGACAATGTTTCCAAACAATTAATTTGGCTATTATTCTGGTACAACTCTTATTTTTTAAGGTGCCAAATAAGCTGGTGTTGTTTTCCATCTAGAGTCATCTCTGTTTTATCACTACTACAGAATAGGCCTTTGTTCCAGGCCATTTGTCACGGTTGCCTTTGGCCCTGGGACAATAGGTGGCTTTTGTTCCGGGTCCAAAGGCTAGCCGGGCCAGCGGGGGGACAGGGGCCTTTTGTCCTGGTTGGAGGTACCAACCCGGACAAAAGGTCCCCCTTTTGTCCCGGTTGGTGGCTCCACCCGGGACAAAAGGCCCAACCCTTTTATCCCTGTTGGTAACACCAACCGGGACAAAAGGGTACCAACCCGGACAAAAGGCCCCTCTACGTGTTAGTTCAAAAGAGAGTTATTCTTTACTGAGTCACATGTACTACTTAGGTGAGTTGGCAAGGAAGCCATACGCTAGGCAATAGGTCTTGGTTCGAATCCCGCAGGCGTAAAGATTTTTAGCGCGAGGGACATTTTGTCCCGGTTCTACCACCCGGGCTTTTGTCCCGGCGCCGAATCCCGGTTCCAAACCGGGACAAATAGCCCTTTGGAACTGGACAAATGGCCCGATCTGTAGTA | |||||||||
gi|198329048|gb|FL998049.1|FL998049 CCHY25102.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY25102 3', mRNA CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): TCTTAGTAAATCCAGCTTTAGTTGAATGAATAATTTGACTATCATCTGTAATTTCTCGTTGTTGTTATATATGAGGCGTATTGATCTTCCATTTCTCACTGTTGTCATGCTCATGGATGTTCAGGCAATAGACAACAGAGAACACACTGTTTCTTTTTTGTTGTCGCAATTATATGTGTGAGAGCTTTCAAAGCCCCAGTACAAACATTGGATGCTCGAAGTAGTACAACCATTTCCTGCCTCCAACCGGGACAAAACTCCTTGGCCCCCTTATCCCCTTCCCTCTCCCCCGCCCGAGCCATTCAGCTCACTTGTTTCTTGCTGTTCTTGGCTCGGGAGAGAGGAGTTCTTGCTCATTTCTTCCCCACATTTGTGAAGATATTTGATTCCCCGTCCATCTATCGGCGCTAAAGGTTTAGGGCTTGTTTTTCTCTTCTTCCTTGGCTTGTATAGCTCATTTCATGCTTTAGAAATAGAGAAAATGTGTAGCTAGCTCATTTCTTGGGCATTTAGCTAGATTGCATATGTAGTTGTGATTTTTTTTTAGATTTAGATGAGTATGTGGATAGTAGAAATTTTTAGAATGAGGGTAGGCCCTTCATGTGATTTACTTGGAAATATGACCATATTGTGGATAGTTGATTTTTGTATTC | |||||||||
gi|198057285|gb|FL785502.1|FL785502 CCGF13793.b1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): CACTAATTAACGATATCTCGATCAATATAGCTAGCTACTAACAATGGAGGACGTGCTTCTGGCCAGCTCGTCGTCGGCGGTCGTGAGCATGAACGGCAGCGGCGAGGGCGATACGAGCTACGCCAACAACTCCAACCGGGACAAAAGCCCCTTCACGGGTTGACTTCGATTGACATCTTTTTATTTATTTTCACCGCCCCTCTCTCTCCATCTCTTATCTCTTTCTTCTTCCCTCGGCATCTCCTCCCAGTGAACTTCCTCCCCTCCCGCTCTCACCCCTCCCACTCTCTCCCTTCGATGCGCCCCTCCCCGGCGCGGGTAGGGACCGGCGAGCCGCCGCACGGGCGCGGGCACGGGCCAGCCAGCCACCGCGGGGGCGCAGGCCGCCGCGCATGCAGGACGGCGAGCTGCCGCCGCTGCAGGCCGGCGGGGACAGCGCGGACGGGTGCAGGCTGGCGGGTGCAGAGCCGACCAGCAGCAGCCGCCCAGACCGGCGCGGGGTGGGTCCTGCCGAGCCGCCTCCGCAGCGCGTGGCCAAGCGCAGGGTCAGGGACTCTTGCCGCCGTGGGCCGGCGAGGGCAAGGACGGCGACGAACGCGGGCTCTGTTGTTGATTTTCTTTGTTTGTGAATCTTTGTGATGTGAATCAATAATTTTAGATCTTGTGTTTTCTTGTGTGTGAGATAAGCATATTACTTGTGTGTTATGTGTTGTATGAAGTACTGATGCTTGATGTGTTATGAATTTTAGATCTTGATTTTGAGAT | |||||||||
gi|304451900|gb|HO251079.1|HO251079 CCTW4946.g1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW4 CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): TGCTGCTGCAAGCCCGGCGGTTGGCGATGCACCTGGTGGTGGACTTTGCATCCGTGATCGTGTCGTGTATGCGTCACTGCATCGACCTTGGTCTGATCCATCTACATCACGGTCTGTGCCTACGTGGTTGTGGTAGTGCCGTAGTGGAACCACCGGGCTATGATTTGACCTGGTTACATTGAAAAAAAAATAATTCTATTTGACATCTAGCATACACTATTACAGAAACGCTAATTTGTCCCGATTGGGAAATCCTTATTGTCCCGATTTTTCAACCAGGAACGGTCCCGGGTTTGGCAACCGGGACAAAATGCTACACCAACCGGGACAAAAGGGTGTGCCTGTGTTACCAACCGGGACAAAAGGTCCCTTTTTTTTTCCTATCTTCCTTTTCTCAATTCTTTTTCTATTTCAATTATACTTTTGCATTTCAATTAAACTTATGTATTGGAATTTAGTGCGTATGATCTCCACTAATATATATAGTTACCT | |||||||||
gi|198208645|gb|FL922087.1|FL922087 CCGO14056.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO14056 5', mRNA s CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): TATAATAATCAACAAAACGAAATCCTCGCCACCAACGGGGCAAAAGATGCTTCTCTGATAAACTCAGATGTGGAAGCACCAGCATTGAGCAAGCTAACCTGCAAACTTCAGTAACCGTCACTCCGACTACTGCACAATGGAAGGCGACTTGCGCATCCACGGGCAAATCTGCTTCGGTCTATGTCGTCGCGTCGTCCACCCACCGGGCCTGAGAATTCCACGATCACGGGTCCGCCCCGTACACGCGCAAGTGGGGAGCCAGGGACCATGGCGAGGATTCGGGAGGTCAAGCCCTGCGCTCCCACGCCGCCAGCCTTCAGTTTCGTTATCCCGCCCAAAGTGCACGGGTTAGGGCACGACGTGCCGGCGGTGGATCTTCTCCACCGGGCGGGCTGCGGCAAGGACTTTCTTTCCACGCCATGAGCGACCTCCATCGTCCCACTTCTACATCACAGCCCATGAGTAC | |||||||||
gi|304547127|gb|HO347513.1|HO347513 CFHF720.b1 CFHF Panicum virgatum U601 normalized leaf Panicum virgatum cDNA clone CFHF720 5' CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): AAGACACTACAGATTTGAAGCCTCTGAAGCAGTCAGCGGTTTTTCCGGCAGCATCACTGAAGGAGAGGGAAGCTGCATATCGGGCTGCCCGTGAGCGAATCTTCTCTGGAGATGATGCCAAGGGAAATGATAAATCATATGTGAAATGTAGACAGGTCCCTGTTGTTGCTCAACGGATGATTGCACATGCACTTGGTCAAAAAGTTCAAAATCCCACAGAGACAGTTGCCTCCAAAGAAGGCAGAGGAAAACAGCTGCCGAACGGGCCAAAAGTTCTGACACATAGCAGGAGCAACTTCTACGCAGTTGCACCAGATAATGGAGAAAAGAATAGTGTTCGAATCGGTAAGCCAAACTCTGCTAGTAGGAATTCATATCAAACTTCATCCAGCCAAAGGTGCCGCACTGCTAATGGTAGAGCTGCTACCGCTGAGAGCTTGAAGAAAGAGCAGACTGGAGCAGCTAGAAGAATGTTTGCACATGCACTAGGGCTGTCTGCATCTCAAGGATGTTATGGTGCACTACCTAAACCGAAGTAAAGATCCGGAGATGAGATGCCAGGAATTGGAGAAGCTTGCCAATGCATGCTGTGCCTGCGCTCTTTATCCAGTCATGCATATGGCGTGGGATGTATCTGTGATGGTTGGTGCCCTTTTGAGCCCATCTGCTGCTTATATGTTAGTCTTCTTGGGTTGGATGTT | |||||||||
gi|304458825|gb|HO257932.1|HO257932 CCTX3938.g1 CCTW Panicum virgatum Cave-in-Rock normalized leaf Panicum virgatum cDNA clone C CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): GCTTGGGTCTTTATGCAGGGAATCCATCCAAAGGCATCCAAGATATCAAGCCATAAAGACCAATCTACGCTATGATGAGTATAATGATGAAAACCGTTTTGTAGAATCTGCAGACATCTGATGATTAAGTACATGATAGTGGGAACGCGCCCCTAATGAAGAAATTAATGCTGCATTCGTGGTATACATTTATAATTTATTCTTCACATGTTGTCCGATTTAGTTTATTCACCCTCTTGACTCGCGACATCCTCTTATTTATTTTTCTTACCACTTTAATATGCAGAAACCACTACTACAAAAACGTTGATTTGTCCCGGTTGGGAAACCCCTGTTGTCCCGGTTTCCCAACCGGGAACGCCAGTCCGGGACCCCTTTTGTCCCGGGTCTGGCAACCGGGACAAAAGGTCCCTTTTTTTTTTCATGTTTTCCTTTTCTCAATTCTTTTTCTATTTCAATTATACTTTTACATTTCAATTAAACTTATGTATTGGAATTCAGTGTGTATGATCTCCACTAATATATACATACATACATATATATATATAGTTACTG | |||||||||
gi|304451900|gb|HO251079.1|HO251079 CCTW4946.g1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW4 CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): TGCTGCTGCAAGCCCGGCGGTTGGCGATGCACCTGGTGGTGGACTTTGCATCCGTGATCGTGTCGTGTATGCGTCACTGCATCGACCTTGGTCTGATCCATCTACATCACGGTCTGTGCCTACGTGGTTGTGGTAGTGCCGTAGTGGAACCACCGGGCTATGATTTGACCTGGTTACATTGAAAAAAAAATAATTCTATTTGACATCTAGCATACACTATTACAGAAACGCTAATTTGTCCCGATTGGGAAATCCTTATTGTCCCGATTTTTCAACCAGGAACGGTCCCGGGTTTGGCAACCGGGACAAAATGCTACACCAACCGGGACAAAAGGGTGTGCCTGTGTTACCAACCGGGACAAAAGGTCCCTTTTTTTTTCCTATCTTCCTTTTCTCAATTCTTTTTCTATTTCAATTATACTTTTGCATTTCAATTAAACTTATGTATTGGAATTTAGTGCGTATGATCTCCACTAATATATATAGTTACCT | |||||||||
gi|198044798|gb|FL771923.1|FL771923 CCGF5789.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virgat CTTTTGTCCCGGTTGGTGGCT EST sequence (targeted fragment marked with yellow): TCATAGCATATGTACCTTATTTATATAATTTCAAACTACGAGCTTGAATAAGAAACTTCCGTGTGCTATGCTTGTACTTGATATATGTTTATGCTTGTTTTTTTGAATGAGCATCAAGCGACATGCTACTAAGATCAAACCATATTGCTTGCGCTCCGTGTATTGCACCCGTGGTGGCTCCAACCGGGACAAAAGAGTCCCGGCCTATATCCCCCTTATTCCTCCCCCCGCCCGAGCCATTCAGCTTAGTGTTTTTGTTGTTCTTGTTCTTGGCTCGGGTGGGGGTAGTTCTTGCCTATTTCGTCCACGATTTGTGAAGACTCTTTGATTCCCTGTCCATTCAACAGCTCTAAAGGTTAGGAGCTTGTTCTTTTCATCATTCATTTCTTGTTTAGCTCAATTTTTATTGTTTAGAAATAGAGAAATGGGAGGTTTGTGAAAGTTTCTTCATTTTTATACCATTTGAACTCAAATGTGTGTGCTACTTTTAGCTGTGCATATATAAATAGATTTACTTGTTTTAGTTTATCTAGATGAGTATAGAGAGTTGATGTGATTTTCTTGTATAGAGAGTTGATGTGTGATTTTCCATGTATAGGGAGTTCATATTATTATTACAAATTAAAACTAGATTTTTGTTTACAATGAGAGTATATATATTACAATGTGAGTATTTAGGATTTTATTAATTTTTTATTGTATTACGAATAATTAGTTGTATTTTGCTATTATTTCAGCTTGGACTATTTAAATTATTATGTTTGTGTG | |||||||||