miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GCTCACTCTCTATCTGTCAGT
species: Panicum virgatum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|198292070|gb|FL960447.1|FL960447 CCHY4597.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY4597 5', mRNA s

GCTCACTCTCTATCTGTCAGT
.|||||||||| .|||.||||
TGAGTGAGAGA-GGACGGTCA

EST sequence (targeted fragment marked with yellow):
GAAACCTGTGAAGTTGCGCCGACTCGAGGGTTTCTTCTCTCTCCCTTCTCCCCTTCTCCGCCTTTGTATTCTACCGCTGCTCAGCCGCAACTCATTGTTGTGCCTCATCGTCGTGGGCCGGGACGCAGCAAGCGAGGCCTCCTTCCGCCGAGAGCTATTCTCTCGCCGAGAAGCGTAGCCCTCTCCCTCTCCCTCGACCTCCGCCCTCGGCCGGTGTCTGACCGGCGTGGTGTGGAGATCCGCCCGCGCTTGGATCGTTTTCTTCGTTCGTCGGTTGGAATCCCTCGGTAGCAATGGGACGCACGGTGCTCTCCGATGACGAAGACGATATCGAGGAGGTCGGGGAGGAGGAACCGCGGTCCTCGCGGAGGGATGGGGACGATGATGATGAAGACGAGGAGGATGACGAAGAAGGGCAGGATGAATTTGAGAAGGATGGCTTTATAGTTGATGATGAAGATGAGGAGGATGAGGATGGAGAGGAAGAAGAACAGAAAAGTGATGATGAGAGGAGAAAGAAGAAAAGGAAGAAGAAAAGGGAATCAGAAGACTTCATGCTTGATGAGGATGACTACATGTTGCTGCAGGATAATAACATCACTGGCATCAGTCGGCCGAAGCCTGGAAATAAGTTTAAACGCTTGAGAAAGCTGGAAGGGAATCTGAAATGGATGAGCGTGGTTTGTCAGATGATGATGGAACTGGGAAAGAACGTACTGGCAGGAGAGAGTGAGTACAGTTT



gi|304457922|gb|HO255115.1|HO255115 CCTX2385.g1 CCTW Panicum virgatum Cave-in-Rock normalized leaf Panicum virgatum cDNA clone C

GCTCACTCTCTATCTGTCAGT
| ||||||||||||..|||||
CAAGTGAGAGATAGGTAGTCA

EST sequence (targeted fragment marked with yellow):
AGTTGAAAATTGAAATCGTAGTTTGGCTTACGCACGCCCTTGTCTGATCTCTGCAGGTCCAGCGTGGGGACGCTGATCCTGCTCTACTTCACGCTGTCCATGAACAGGCCGGACTCCAGCGGCAGTGGCGGCGGCGGCGGCGGCGCCAGCGACGCTCGGTGAGACGCCAGCTGTCGAAAGCGAAGGTGTTTTTTTGCCTTGTTCTGAGAATTTTCAAACAACAAAGATGACTTACAAAGATTGAGAGGGGTACCGTAATCCGGGCAAAAAAGAGAGAAAACTGTGCTGCTGCGGGAGTCTGCAGGGTCAGTCACACTGATGGATAGAGAGTGAACGGCTGTGAAGAAAGTAGCCCGAGTTTGATGGAGAAGTTTTGTGATGGTGCTCGTTCTTGGTCCTTCTCCTCTTTTTTTTTCTTTCCCTTTTTTTTTCTGATTGCTCAAATGAGGATACATGCCGCTTTACAGCGATAACACGTAATACTGTATTTTTCATTTCTTTCTTATGCTGCAAACAGAATCATACAAATTGTGGTGC



gi|304536050|gb|HO332969.1|HO332969 CFHC3327.g1 CFHC Panicum virgatum U518 normalized leaf Panicum virgatum cDNA clone CFHC3327

GCTCACTCTCTATCTGTCAGT
.||| ||||||| |||| |||
TGAGCGAGAGATTGACACTCA

EST sequence (targeted fragment marked with yellow):
ATCATCCCAAAGCAAAACAACACGCCACATCACTTGATACTACACTCACTCCAATACTTCGATCATCAAAGTAACCCACACACAACCGCAAAAATGGCCCGTGGAAACGCAGCAAACACCAAGGTCTTTTATCAGGGCAGCAGCGAGGGCTTCGTCGTATTTGTCGAGAGCGAAGAGATTGTCAAGAAGTGGAAGGACGACAAGACCATTCCTCTTACCGAAGTCGTTGCTGGATGGAAGATCTTCACCACCGAGCACGGCAAGCAAGGTGTCCTTAACACCGCCAGTAACTCACAGTTAGAGAGCGAGTTTGGAACCAAGAACGAGGACGATGTCGTCAAGCAGATCCTGGAGAAGGGTGACATCCAGTCATCTGAGAACCCCGAACGCCAGGGCACCACCAACGACAGCATGGGTGCCAGGACAGCTCACTAAGCAGCTCGCTTTCTTCCTCACGAGTCCGACATGATAATGCATGATGGCGTTTCTAGCTTCATTGCCAGGTCTGGAATATGGCTACTGGCTACAAGGGTTGAAGGTCCTCTGCTGAGATGCGAGGCTACCCAGATATCTTGATAGGGTATATCCAATGATAACTTACACATG



gi|198313649|gb|FL982576.1|FL982576 CCHY16705.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY16705 3', mRNA

GCTCACTCTCTATCTGTCAGT
||||||||||||.|||| .|
CGAGTGAGAGATGGACAAGTA

EST sequence (targeted fragment marked with yellow):
TCTTGAACGAAGAATTCAGCTCTGGTCCATTCTCCAGCATCTTTGGTGACAATAGCAGTAACAAACCACAGGATGGAATTGATAAGAGCAAAACTTTTGCGGATCCGAGCGTTGAAGAAACTGTACGAGATACAAAAGCCCCTCTGCAGCTTGAATCAAACCTTTTTAGCACAAATCAGAAATCAACCTCACATGGAGGTCTTGCAGAGAGGATGGCTGCCAGGGCCGGTTTTGGAGTCCTGAAAATTGACACATCTCGTGTCAGTTCTTCTGCGCCAATTCGGTCTCCTGTGACAATACCACCAGGTGTGAGTCCAAGGGAGCTTCTGGAGTCACCAGTTTTTCTACCCAATGCCATTGCACAACCTTCTCCTACGACCGGCAAATTGCCTTTTCTAATGCCTAATAACCTTAAATCAATGATATCCTCGGTACCGAAGAAGGCTGAAGATCAATCGCAAGATGATTGTGCATTTTCCTTCCAGACTATTTTGAGGTCTAAGCCCCCAAGTTTTTCAACTGTGGACAAGGGTTTAAGTGCATTTCACCAAAACCAGTCCCTAAATGATAGTCAGCAGGAATTAAGTCTCCAGGCTAGTACAACTGCAACCAAGGATGAAAATGAGGAAAATCTTGTTAAACCTAGCACATGTGATTCCATGTTAGACAACGATCATCCATCCCCTGCCGATGAACAGGTAGAGAGTGAGC



gi|198288473|gb|FL956084.1|FL956084 CCHY2293.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY2293 5', mRNA s

GCTCACTCTCTATCTGTCAGT
||||||| ||| |||||| ||
CGAGTGAAAGACAGACAGGCA

EST sequence (targeted fragment marked with yellow):
ACATATTAATAATACTACAATAACAGATATTAATGGCATAGCTGGGAGCTCAGTTTGCCCCAAAACTGTAAATCTTGAAAGGAGAAACATGCTGACTCCCAAACAGATCACACAGAAGCCACAAAAACAATTTTCTTGCTATGTGACATCTCTGGAGCATGCTCGGTCAGAATCTGCAAATAGGGCAATTCATGTTCGGGAAAAGCAACAACAGCCTGCAAATGAAACAAACCACAGGGAAAATGCATGCACTAGTCTGGCCAATGAAACTATTGCAGACAACAACTCGAGGAGAACAAGGCAATTGATTGGCCTCAATGCTAAAGATGCAGATAAGAGACGGGGGCAGACACCAATTAATTCTACACAACAGATGTGGAAAGAACGATCTGATGCTGTGACCTGCAGGGAACTGGATAATCAAGTAACTCATCTAGAAAGTAAACAGCCAGGGCATCACAGAGTTCACATAAGGAAAAGGAAGGGTCTGCTTTCTGCAAATTCAGGTCTTCAGCTTAGGCGTAGCAACGTTTGGCGAAAGATCCTTCTGCCGCCATAGATAAACAGCCTGTTATGGACGCCCAACTAATACATAGGCAAACTGTTGGGTGTCAAGCTGCTTCTCCAAATGGCCTCATGCCAATTGCCACTACATATGACGGACAGACAGAAAGTGAGCCTGATGAGCAGTGGACCACATCTCCGT



gi|198062239|gb|FL793246.1|FL793246 CCGF18010.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga

GCTCACTCTCTATCTGTCAGT
||||||||||| .||||| ||
CGAGTGAGAGAGGGACAGACA

EST sequence (targeted fragment marked with yellow):
GTCGCGAGAAGGGGTCCGTGCCAGCCGTCGTCGTCGGGCCCATGTACGGGGACCCGGCGCCACCATGGTAGTGCAGCATGGCCGCCGCCACCTTTCCTCAATTCCCCTGCCCAAAACACGAAATTCCGTTGATCTACCACCACGCAGGGCCTAGGCAATAGAAAATTCCGGCATCACTTGACCAGTGCTGCGACTGCCCAGCAGTGTCTCTCTCGCCTCCGGCCTACAAGTACGTGCTACCAACGACCACTATTCTGCTAGGAGAGCAATTCCGGGCACTGAATTGGGGATAATTCTTGCTTCTACACCCATATCTCTCAGCCCCCGTTTCCCTCCGGTCTCTCTCTCGGCACAGACAGGGAGAGAGTGAGCGCCGCAAGGAGGATTAGGGACTTACGGCGCCCCTGGACGGCGGGTTATGAGGGAAATTGGCAGCGAAGGGCAGTGCAGCTAGGGGAGGAGGAAGAGGGATGGTGGTGAAAGGGATGGGATGGGGTCATGGACAACTGGAAAGAGGCAAAGGAGGGTGGAGGGCAGGCAGAGAAAGCCAAGAGCCTCTACAAAGGGGAGGCTGGGGTATGGTACATGTGTAAACTCCACTAGATACTAATGCCTTTAAGATTTCTTGTATGTATCTCCCTCACAAGATTTATGGACTATGCAAACAAGATATAGGTGCCTTTTATAAATATTAGAGATACC



gi|304539346|gb|HO333985.1|HO333985 CFHC3937.b1 CFHC Panicum virgatum U518 normalized leaf Panicum virgatum cDNA clone CFHC3937

GCTCACTCTCTATCTGTCAGT
||||||||||| |||||||.|
CGAGTGAGAGA-AGACAGTTA

EST sequence (targeted fragment marked with yellow):
GAAGGTACGACCGCCCATCCCATCCATCTCCTCTGCTCCAAAAACCAACTCTCAAGAACCACAGGAGGAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGATGGCCGTTTCTCTCACCACCTCTCCTTTCAATTTCTGTACGGCGCGTGCTCACCGGATCCGAGGAGAACGAAGGCCCTTTCTTTCTGGCTCTTCCTGCTGTGCTTGGAGGGTTTATTTGGTTTTTTTCCTCTTCGGTTTTCTCGTTTGCATCTTTTGCTTGGATTTTAAAGGTATTAAAGCTGATTTGTGGGAAGCCATAGAGTAAGACAGGCGCTTCTAGATGCGGAGATGCCCTTGGGAGATTGACAGAAGAGAGTGAGCACACGGCGTAATGAACAGCATAACATGTATGTTGTTCTCACCGCGTGCTTACTCCTCTTTCTGTCAGCCTCTCTTTTTGGAGGGCTTTAACTCCCATCAAGATCTATTGGTGCGGGTGTAAAACCGTTTATTATTTGATTTTCCACTCATTTCAATTCATATGTTTTTGTATAGTTTTTTCTTTACAAAAGGTTCGTACTTTATTTGTGAGGAGAAACTTAACCACTTAAATTTAGCAAGCATACCTCTGGTACTATGATTTTCCTCCTACTTTATCCTACCACTTCCTTATCTCCTAGATCTTCACACACACTTATTTTTCTTCCTATTG



gi|198186084|gb|FL903028.1|FL903028 CCGN9977.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN99

GCTCACTCTCTATCTGTCAGT
||||||||||| |||||||.
CGAGTGAGAGA-AGACAGTTT

EST sequence (targeted fragment marked with yellow):
CCTTCCCCCCTCTCCGCTCTCTCCCTCTCTTTGGGTGCGTGTGCAATTGAAAAGTGACAAGCATGGTGATTTCTTGTGTTTGATTTTGTGTTTTCGTTCTGATCTTTCTTGAGCACCCAGAAATCCATGGTGTAGTTTCTTTCTGTTCAGGGCCATTTCATGCATGCTAGCACGCACACATCTATACAACTATATATAGCTAGACCAAAAGAAATTATTTAATGAGTCACACGAGGTCGATCTTCATGGTGCCTTAGGGTTTTTATTTGCAGTTTGCCTGAAAGGGAGGAGCTGGGTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGTCACTCATTAGGCCCATCACTTCTTCCCCGCTAATATCTTACATGCGGATAGGATCTCTATGTCTTTTCTTCCTAAGTAATAACCAACACGATCTGATTCATGCATGATTTCTATTCATTTTTTTCTTGTAGGGAAACGATTGCAAAGCAAGCAATAATATTGATCAAACTTTCATCAGAGACGACTCTACATACGATAAAAAACAAGATTAGTGGTTGTGTTATTTCTCTATTTTTATTTTCCATTGTAATAAATTCCCAGTCATGTGGGTAGTGGTTGTGTTATTTCTCTCAAATAAGATGATTTTTAGGGTGCTTTCTAGC



gi|198062238|gb|FL793245.1|FL793245 CCGF18010.b1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga

GCTCACTCTCTATCTGTCAGT
||||||||||| .||||| ||
CGAGTGAGAGAGGGACAGACA

EST sequence (targeted fragment marked with yellow):
ATTCCATGGAACCGTTAGCCTAGCTGCATTCCGCAGGAGGGAAAAGAGAGAGGAGAGGAATTACGGCGTGCTTGATTCTCACCTGGCGACGTCCTCCCAGAGCGGCGCCTTGAGGGGGGCGCTCCGGAAGTCGGCGTCCATCTCCGTCCGGATCCTGATGAGCGCCAGCGTCTCCTCGCGCGGCCACCGGTGGCCGCCGCCGCCGCCGGCGTCGGCCGGCACTTCGTCGTCCTGCAGGCCGCCGGCTGCGGCGGCAGCGCTGGAGCCGCCCGCTTGCAGCTCCACGAGATCACCCCTCGTCGTCCCCGCAGCCGCTGCCTGCAACTCCATCGGCGGCGGAGGGATGACGGCGGCGACGGGCGCGGGCCCCGTCGGCGTCGGCGAGAAGGGGTCCGTGCCAGCCGTCGTCGTCGGGGCCATGTACGGGGACCCGGCGCCACCATGGTAGTGCAGCATGGCCGCCGCCACCTTTCCTCAATTCCCCTGCCCAAAACACGAAATTCCGTTGATCTACCACCACGCAGGGCCTAGGCAATAGAAAATTCCGGCATCACTTGACCAGTGCTGCGACTGCCCAGCAGTGTCTCTCTCGCCTCCGGCCTACAAGTACGTGCTACCAACGACCACTATTCTGCTAGGAGAGCAATTCCCGGGCACTGAATTGGGGATAATTCTTGCTTCTACACCCATATCTCTCAGCCCCCGTTTCCCTCCGGTCTCTCTCTCGGCACAGACAGGGAGAGAGTGAGCGCCGCAGGAGGATTAGGGACTTACGCGCCCTG



gi|198358973|gb|GD025154.1|GD025154 CCHZ12136.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum

GCTCACTCTCTATCTGTCAGT
||||||||||| ||||||||.
CGAGTGAGAGA-AGACAGTCG

EST sequence (targeted fragment marked with yellow):
GATCCCCTTTCGTGCTCTCTCTCTTCGTGTCGAGTTCTGCTCGTCTGCTTGGCCCCCTTTTCAGCGGTGGTCGACGGTGGGATGGGGCGGGGCGCTGGACATGGTGGTGTGCTGTGGCTGACAGAAGAGAGTGAGCATGCAGCGGCCAGACTGTATCTGAAATTCTGAATACGCGGGGGTGGATGGATGCAGGCCTAGATGCAGCTGCTGTTGCGTGCTCACTTCTCTCTCTGTCAGCTATCCTCCTCGGGACTGTTCCGCCGCGTCCATCTCCCCCCTCCCACTTCCATCCATTGCTGCGCACCGCTGCGTCGTCGTGCGGACGTTCTCGCATCGGTCGCCGTGGCCGTCGTGGCACTGTTCGTCTTGAGGCGCCTGCCGGCCTTGCCGTGTCCCCACCTGCAATAATCCTGCTCGGATTCCTACGGCGCCGGCCTGCCTGCTCTTTGGAACAAGGTACTCTTAAATTTCAGGCAGCCGCCGCGCGCATGCACGCCATGGATCCTCGCGCCGGCCGGGTTTCTTTTCTCGGCGAGTTGTGGACTTGTGGTTGCTGTCTTTGTGGCTTCCGATGATGGATTATTAGCAGGGGCGGCCTTCAGCCTTGGGGGAGGAGGACGCGTGACGGTTTGATTAACACCTGGCTTTGCTCACCTCCCCAGGTGTGCTTGTAACGACTCGACCCGAGATAATGACTAAGATCTACTCTACACTTTGAGCG



gi|198172000|gb|FL886968.1|FL886968 CCGN7007.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN70

GCTCACTCTCTATCTGTCAGT
|||||| |||||||| .| ||
CGAGTGCGAGATAGAAGGCCA

EST sequence (targeted fragment marked with yellow):
CGAACAAGAGAAGGGAGAAAACGCGGAGAGAAGCTTGAGATCATGGCGGCGACGAGGAACTTCGCCATGCCAGCGATCATGCTGTTCTTGGTGTTCTCGGCGGTGGCTGTCGGCGCGGCGCGGCCTTTGGCTGGAGAGGAACTGTCCGGAGAGGCCACCGCGGGCGAGTCCATCGTCAGGTTCCTCCGGCAGATATATCGGCAGCGGCTTAACGGGCCAGGCCACTCGTGCCAGACTTGGAACCCAAACGGTGGGTGCTGATGAGTTGCAGAAGCAACCTTACCGGAAGATAGAGCGTGAGCCATGCATGCTAGGTTTTTTTGGGCTGTAAAGGGTACATGAGCCATTTGTTAATCTTTCACTTAGGTTTAGTTCTTTATGTATTTTTTTGTCAGGGGTTTGATTTCCCTTGTTGAAAATAGTCCCCACAACATAGAAACTTTAGATAGGTAGATGGCAAGGCAAGTGTAGACAAAGTTATACAATTGTATGAAGAGAAGACAGTGACTAGTACAGTTTTGTGCTTTGGTTTGGTG



gi|169705543|gb|FE634523.1|FE634523 CBYY12222.b1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY12222 5', mR

GCTCACTCTCTATCTGTCAGT
.|||||||||| ||| ||| |
TGAGTGAGAGAGAGAGAGTGA

EST sequence (targeted fragment marked with yellow):
CTAGAGTGAGAGAGAGAGAGTGAGTTGAGCTGCGCGCCTCGCCGGGACTCTTCGCGTTGCCTCTTTGGAGAGAGAAGAGAGAGCGGGGAAGTCGGGCGGAGATGTCCAAGATGGCGGAGGAGAAGGCGGTCGGAGGGGCCGGTGCGGCGGACGCGGCGCAGCAGCAGCAGCAGCTGGCTGCGGGCGAGGCGGCGGCGGCGCGGGTCCGGCCCGTGGAGACGCTGCTGCGGGCGGCGCCGCTGGGGCTGTGCGTCGCCGCCATGGCCGTCATGCTCAAGGACCAGCAGACCAACGAGTACGGTACCGTCGCCTACTCCGACCTCGGCGGCTTCAAGTACCTCGTCTACGCCAACGGCCTCTGCGCCGCCTACTCGCTTGTCACGGCCTTCTACACCGCCGTGCCAAGGCCCGCCACCGTGTCGCGCTCATGGGTCGTCTTCCTCCTCGACCAGGTGTTCACATACCTGATCCTAGCGGCGGGCGCGGCTGCGGCGGAGCTACTGTACCTAGCCTACAACGGCGACAAGGAGGTGACATGGAGTGAGGCGTGCGGCGTGTTCGGCAGCTTCTGCCGCCAGGCCCGGGACCTCGGTGGACATCACCTGTGGGCTCCGTGGTCTGGTTTCATCCTCCTCTCAGTCATCTCCTCCTACCGCCTCTTCAGCACCTACTAGGCGCCCCCGTCATCGGCGCTCGCCAACAAG



gi|198095745|gb|FL817449.1|FL817449 CCGG15648.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat

GCTCACTCTCTATCTGTCAGT
|||| |||||||. |..||||
CGAGGGAGAGATGTATGGTCA

EST sequence (targeted fragment marked with yellow):
AACTAACTCACTGTTTGTAAGGGGGAAACAACCTGATGTTCTGCCATGGTGACCATGGTTGCAGAAAGCATGACCGATAATCAGGCAAGAGAGAATGAAGAGGAGGAGCAGGGAGCTTGTGGTAGTTGTGGGGCAACCACGAGCCATGCTTCTCTTGTTCAAACAAGCAATGAATAGAGAATGGGAGATGCTGCTGTGTTTGGATTCAGAGAAACAGCATAAGGGAGCAAATGTTGAAGGCTATATAAACCGGAGACTGGTGCAATGGCTGGTGTGTGGCCGCTCTGTGGCTCTCTGCTCATGCCTTGCATATGCATATCCCTGTGCCATTCCATGCAGAGACACTGGTATGTAGAGAGGGAGCAGTGGGGACTGCGGAGACCACCAGGTGGCTCCCCCTCATTTGCTCGAACACACGGGATAACAAATGCGTCTGAAACCTAGCAACGGGGGTCCTTGCTTCAATTATTACCATAGCATCACTTTGTCTTCAATGCATGTGCTTCTCTGCATGCTATTTTCCGTTCCCCATTTTTGAACGTAAGAGGTCAATATTATGCTTTATATGGCCATTTAGTTCAATATTTGTTGTTCCATTTGTTCTACAGAACCAAGGCATGTTGAAAGAGACGTGACAATTATTTGCACCAGTAGCAGCCATGTATATAGCATATAATAAAACTGAAGCAGGAAAATGCAACCTTATTCAGTATAAGAATCTAAGAGAAGATGCTTGAAAGAAGGCAACTAATAAAGGGGAAGCTCTGATAACATGCAGTATCGTTTGTGA



gi|304449938|gb|HO248253.1|HO248253 CCTW3422.g1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW3

GCTCACTCTCTATCTGTCAGT
| ||||||||||||..|||||
CAAGTGAGAGATAGGTAGTCA

EST sequence (targeted fragment marked with yellow):
ACATGCTCTTGGGGAGAATCTCTCGCCCTGAAAAAGAGCAAAGTGTCAGCGCTTTCCCCCTGTTCCTAGTTTTGGTTCTACTCCACCGGCGGCGCCAGCGACGCTCGGTGAGACGCCAGCTGTCGAAAGCGATTGTGTTTTTTTTTGCCTTGTTCTGAGAATTTTCAAACAACAAAGATGACTTACAAAGATTGAGAGGGGTACCGTAATCCGGGCAAAAAAGAAAGAAAGCTGTGCTGCTGCGGGAGTCTGCAAGGTCAGTCGCACTGATGGATAGAGAGTGAACGGCTGTGAAGAAAGTAGCCCGAGTTTGATGGAGAAGTTTTGTGATGGTGCTCGTTCTTGTTCCTTCTCCTCTTTTTTTTTCTTTCCCTTTTTTTTTCTGATTGCTCAAATGAGGATACATGCCGCTTTACAGCGATAACACGTAATACTGTATTTTTCATTCC



gi|198367980|gb|GD036071.1|GD036071 CCHZ19005.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum

GCTCACTCTCTATCTGTCAGT
||||||||||| |||||||.|
CGAGTGAGAGA-AGACAGTTA

EST sequence (targeted fragment marked with yellow):
GAAGGTACGACCACCCATCCCATCCATCTCCTCTGCTCCAAAAACCAACTCTCAAGAACCACAGGAGGAGGGAGAGAGGGCGAGAGAGAGAGAGATGGCCGTTTCTCTCACCACCTCTCCTTTCAATTTCTGTACGGCGCGTGCTCACCGGATCCGAGGAGAACAAAGGCCCTTTCTTTCTGGCTCTTCCTGCTGTGCTTGGAGGGTTTATTTGGTTTTTTTCCTCTTCGGTTTTCTTGTTTGCATCTTTTGCTTGGATTTTAAAGGTATTAAAGCTGATTTGTGGGAAGCCATAGAGTAAGACAGGCGCTTCTAGATGCGGAGAGGCTCTTGGGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGAACAGCATAACATGTATGTTGTTCTCACCGCGTGCTTACTCCTCTTTCTGTCAGCCTCTCTTTTTGGAGGGCTTTAACTCCCATCAAGATCTATTGGTGCGGGTGTAAAACCGTTTATTATTTGATTTTCCACTCATTTCAATTCATATGTTTTTGTATAGTTTTTTCCTTACAAAAGGTTCGTACTTTATTTGTGAGGAGAAACTTAACCACTTAAATTTAGCAAGCATACCTCTGGTACTATGACTTTTCTCCTACTTTATCCTACCACTTTCTTATCTCCTAGATCTTCACACACACTTATTTTTCTTTCTATTGTTCTAGTCTTTTCAGTCAAGTTGTCATGAGAACCGCTATCGAGGAGCCTACGTATTTTTTCTTTATCCCCAAGTTTTCTGTTTATTTGGGCCTC