| mature miRNA: GGTCATGCTGTAGTTTCATCT species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198209476|gb|FL924023.1|FL924023 CCGO9704.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO9704 5', mRNA seq GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): CACAGACGAACGAACGGTTGTTCTGGTTCCTCAATTTCTCATCAGTCCATGATGAATGAAATGAAACAACAGCATCACCTACACCTACATCGAAGCGGCCGATCGAAAGCACGAAATGCGTCGTCAATTTCGTCACGCAGCTAGGAGTACTACACATTTGCCGCCGCTGATCTCACAAGAACCGCGATCAGCTGGTACTCGAACTCGATGCTCATGGCATTGCAGACTTGCAGTACAGGAGCTCAAAGATCCGAGCTTTTGCGAGATTGGCCGTCGCTTCACTTGGCGCCGACGCCGAGCGTGAGCTCGAGCTCCTCGGCGGCGACCTCGTGGATCCGCTCGCCTTCCCACGGCGTGACGCGGCCCTTGTCGAACTCGAACTCCGCGGCTGCCATCCCGTCCAGCTCCATGGAGGTGGAGGCGGAGGCGCCGCTGCTCGGGTTGACGAGGTTGTACGTGGGCGAGGCGGGCGCGGTCGTCGCCGCGAACATCTGGAAGCTGATCCACCGGCCGGAGTCCACGGTGGAGCAGACGTCGGACTCGTCGCACTCGGGAATGGTGTCCGGGTGCTCGCGCCGGCGCGCGCGGGTGGGGCTGGCGGGGGCCGAGACCGCGAAGAAAGGGGTGCCGGAACGGGTCGACAGCGACGCGTCCCAGTCGGGCTTGCGGATCCTTGGTAGGCGGGCGCGACGCCGC | |||||||||
gi|198089026|gb|FL816750.1|FL816750 CCGG15261.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): GGCAACGAAAAATCTATTGCTCACATCACACTGGTACGACAAAACCATACTAGGATCATTACAAGCACCAGCATATGAAACTACAGTGTGACAGCGACCACTCACTCACCTCCGGCCACAATTAGGGCCGCGGCCATGCCCCACCCCGCGCTTAGCCGCTAATGGCGGTTTTAATATGCACCGGGGCGTGGCGCACATGGGCGTGTACAATACCGGAACTGCCCTTGCTTCAGACCGCCCTCACGCTGCCACGCTGGACAACGTGGAGTCAGCTGCAGCGTGGCGGCGGCGGGGTCCGTCCTGGCCGGTCGAGGACGATGTCGCCGCGCGGTAGGCCGCGCAGGCGTGGCGGGCCGGCGCGCCGAGCGCCGCGTCCACGGCGGCGTCGCTCCACCGGTCCCTCATCGCCCGGTTCAGCCGGGCGACGAAGTCCTCGCGCTGCCGCTCGAGGTGCCTCACGAACCGTGCCGACATGCACCGGCGTCCCCCGTCGCCCGACGACGACGACAGAGGCGTCGCCTCCACCTCGGCCGCGGCGTCGCCGCCGCGGCGGAGCGAGTACTCCACCAT | |||||||||