| mature miRNA: TACTCCCTCCGTCCAAAAAAC species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198361267|gb|GD031255.1|GD031255 CCHZ15842.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): GATTGATTCTTACATGCGCATGTACTTTCTAAATAGGGTAAGATGACATGTTTTTTGGGACAAAATTTGAGTCCAAAAAAAAACAAGTCATCTTAGGAATTTTAGGACAAATTAACAAGAAGGTAAAAATGACCATGTTTGCCCCTATTTATTATCCTTATTTGGCGCTGATTGATTCTTACATGCACATGCACTTTCTAAATAGGGTAAGATGACATGTTTTTTGGGACGGGGGGAGTACATCTTTAGCACCCCTTTCTGATATTTTGATCTGTCAGCTTACACTTTGACATATCTTGTTACCTTGAGTAAAAGATATGAATGAGCTGATGATTTTTTAAATCATCAGATGAAATTTCACTCTTGACTGTCATCTGTTCTGCAGTTCTTCAACTAAGTTTTCCCTTTCTGTATGTAGTTCATATTGATGCTGGATCTGTATGTGTTCTTTACACCTAGCAAGATCACGCTCTAGCTTGTGATCCCTGTATATTGCTGTTTGAGGCAGCAATGGCCAATGACAATGACGTGCTGCAGATGCCAACTGCTCGCCTGCTTGCTTCTGCAATTCCTAGAGTAGTCACAAAGAGTAAAGGCCTGATCCCTGTATAGTTTGGTTGCTTGTGAATTATGATGACGAAAGGCCAGCCTAGCAGCAAGCTTTTTATTTAATCTTGTTACTTGATCAAGAAGCCTGTCCTGTGCAGCACCATTGAGAGTG | |||||||||
gi|304509311|gb|HO308021.1|HO308021 CFCB5779.b1 CFCB Panicum virgatum WS4U normalized leaf Panicum virgatum cDNA clone CFCB5779 TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): GATTTGGAGCATATCTCAAGATTTTACTGAAGAAAAATGCAAAGAGATGCTCAAATTTTTAATCCCTCAAATTCGTAAGTGTTTGTTATTTCCGTATTCCAATTTTTCTGTGATTTTAGTTTGGTATCAAATCTTGAGCGCCAAAAAATCAAGGATTTGTATCTTTAGTTCATAGTTTCATAGGAATATTTGTAAACATCATTCTTTTTGGGACGGAGGGAGTATGTTTTAGCTTGAGACGTTTTAGAGGTAGGCTTTACTTGCATCATCCTTAAGGGGTTTCTCTAGGTCATGTCCTTAGTGCTGTTTCCGTTGGAAGAGTCTGGTTTTGAAACCCAACATCCCCTGCTCTGGCCCAAGGTGGGGTGATGTTGCTTTGTAATTTGGGCCATTTTTCCTCTCTTAATGCAAAGATACGCAGCTCTCCTGCGTGTTTGATAAAAAAAAAAAAAGAGTTTAGTTCCGCATTGAGCATTCTTTTTGTCATCTGCTTTGTTGTTTCCATTCCTGACTGGACAAAACTGAAGATCCGGTGACCCATCTACAAAAGTGATTGCATTTAAGCTAATTCTTTCCGAAAATTGAAATTGCAGGTGCTAGCTGATGGCCATATACCTTGGGCCTGCGAGGCATTCTCCCAGTCCCATGGACAGCAACTTGTACAGAACCCTGCTCTCTATGGGGCTGGCGTTTCTTCATGATTAAACTC | |||||||||
gi|169697433|gb|FE625463.1|FE625463 CBYY6110.g1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY6110 3', mRNA TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): ACCAATGTGTCTATATTTATGATGTGGCGACAGGTAAGGTTGTTGAAAAACTGAGATGGCACGGGTCCATCATTAGAGACTGCTCATGGCACCCGTACCTCCCCACACTTGTCAGCTCTTCTTGGGACGGCTATTTGGTCCGGTGGGAGGCAACAGAGGATGACAGAGACCCCTCCATGCTCAGGACAGGGAAGCAGAGGATGCATCCAGAGGGATACACAATGTCGTTTGTCCTTTAGAAGTGAAGCTTCGTTTGTCCTTCAGAAGTGAAGCTCTCTAGGGTCTCTTGTGGCTCCACTTGTTCACCTTGCAGGCTCCACAAGCCTCTGGCTCGAAAAAGTCCTTTTTCTTTTCAAAATTTCGTGCTGTATAAAAGTGATCAAGATTGAATTGTTGAGGCGGTACTTAGACTCGCAAAATTGTACTCCCTCCGTCCTAAAAAAATAAGTCATTTTAGGATTCAAATTTTGCCCTAAAAATCATCTTACCCTATTTAGAAAGAACATGTGCATGCAAAAATCAATTAGTGCCAAATATAGATAACAAGTATGGGCAGACATGGTCATTTTATCTTTTTGTTAATCTATACTAGAATTTTTAAGATGACTGTTTTTTGGACGGAGGGAGTAGTGCTTTTTGGGATGGAGGGAGTAGTGCAGATTTTTATTTTTAAAAAAAACTAATAAAGATGTTTATTGGTAGTTC | |||||||||
gi|198198930|gb|FL912580.1|FL912580 CCGO7738.g1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO7738 3', mRNA seq TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): CTGAGGGGCTTCATCAACGGCAGCTTTCATCGCGCTCATCCTGGCGTTCCTGGGCTTTCCCGAGAGAGAGGCGCTAGGCTGGACGATCGATCCCCCGTTCCCAGTACAGACTTTTGTTCGTGTTCGTCCGGTGCAGAGTACTAGTAGCATACTTCCTCCGTCCCAAAAAAAAACCGTTGTTCTTTGACTCTTAGAAATTGCGTTTGACCCGCTCGTCTTATTCAAATATTTTATATATATTATAAGACAAATAAAATATTATTAAAATATCATTAGTGATGTAATAAGTCATAACAAAAGTGATAATATTTGTAAAAAAAAAGTTGAATTAGACGAGTAGTCAAACACAATTTTTAAGAGTCAAAGAACAACGATCTTTTTGGGACGGAGGGAGTACAGTACAACCATCACGCTGTCAGATCGATGCTAGGCGCCACCACTGCATGTGTGCGTGTGTGTTTTTACAGAGTTTGTATGATATGATGCATTATACTGTCGCATTGGGATTTGTGCGATATTGAATTGTACGTAAGAGATCAGAGTTGCATGAAT | |||||||||
gi|198078894|gb|FL806781.1|FL806781 CCGG6318.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): GCACTCTTTGTGGACAAAATTTGAATGCTAAACGAACACTTTTTTTGGGACGGATGGAGTATGTTGCATGTGTCCTGACTGCTGGAATAAAACCAAAATATACAACAAGAACAAATAGGTATACTACATTTCGGATAAGAAACTGAGAAAAGGTGATCTGATGACATGGATTGAGCAAAAAATTGCCAACAAATTACCTGGATGGAAGGCTTCACTTATGAGTTTATCTGGTCATGCTGTCATGGTACGTTTTGTTCTCTCGGCAGTCCCAATCTATTTACTGGTGGCACTGAAAGTTCCTAAGTGGTTCATTAAAGCCATCGATAAAATCAGAAGGAGCTTCTTATGGAAGGGACGAAAAGAGGTCAATGGTGGCTGTTGCTTGGTGGCTTGGGAGAAGGTCATGCGGCCACTCGAACTAGGAGGACTCGGTATCCATAACCTTGAGGTCATGGGATGGGCACTACAAATGAGGTGGCTTTGGATAGGAAAAACAAAACCTGATCGACCATGGGCCGGCCTGGAAATCCCGGTACACTCGAACACCTCGGCCATGTTTGCCATCTCGGTTGTAACCAATGTCGGTAATGGTGAGAATACATTATTCTGGTCTGACCATTGGCTTCTGGGAGAGAACTTGGAGAAATTGGCACCCAATGTTGTCAAATGTGTTCCCCCCAAAATAAGAAGAACAAAGGACTGTGGCTGATGCCCTCCTCAATCTAACTTGGGTTTCTGAAATAAAAGGGGCACTTGGGTTGGCTTGGCT | |||||||||
gi|198311217|gb|FL978840.1|FL978840 CCHY14654.b2 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY14654 5', mRNA TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): TACTAGGATCCTACTACCCCATCATGATACATGAACATTTCCCTATCTAGGACAATAATTTAGTGCGGCATGTAATTTAAATTTTCTTCTTGCTTCCCAAATTACAATAAAAGAATATGGAATTTCCCTTTTTCCCACCAGTAAGGCATGATGAAGTTTTCCTAATTTCTGTGCCAGTGTACTTGATTAAGTTGTACATACTCCCTCTATCCTGAAATGTAAGTCATTCTGGCATTTTACCAGATTCATTGAACATTCTCTAAATCTAGACAAACTGTATGTCCAGATTCATTGAACATTCTATGAATCTGGACACAGTAAAACACTCCCAGGATGACTTACATTTTAGGACGGAGGGAGTATTTGCTATACATGTGACGAGATCTTCAAAATAAGCTTCAAATGTTGGCTTAAATCCCATGGATAGATTAATATATACATAGGTGAAGAAGTCTGCCAGCTTTGAATTTTATTTGTCATTGTAACCTGATCTTGAGGTAATTTAAGGCTTTGTCAGGTCTGTATTTTTTCATCCACCTTTATTGGTTGGTTTGGTGAATTGGTGTATGCACTAATCTGAGTACAGCATGTTTTTGTTCAATTAATTTTGCATATATGCCCAGTTTCTTACCTGCTGACCATGTGTCTGTTCTGTTAGCAGACAGCTTAATTTTTTGGAAGGGAAGTCCAACA | |||||||||
gi|198005455|gb|FL747400.1|FL747400 CCGC2568.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): TGTTATTTTTCACCAATGCACAGCACGGGGCAGAGGTACATATACACAGGATCCAGTGACCAATGTGTCTATATTTATGATGTGGCGACAGGTAAGGTTGTTGAAAAACTGAGATGGCACGGGTCCATCATTAGAGACTGCTCATGGCACCCGTACCTCCCCACACTTGTCAGCTCTTCTTGGGACGGTTGTTTGGTCCGGTGGGAGGCAACAGAGGATGACAGAGACCCCTCCATGCTCAGGACAGGGAAGCAGAGGATGCATCCAGAGGGATACACAATGTCGTTTGTCCTTTAGAAGTGAAGCTTCGTTTGTCCTTCAGAAGTGAAGCTCTCTAGGGTCTCTTGTGGCTCCACTTGTTCACCTTGCAGGCTCCACAAGCCTCTGGCTCGAAAAAGTCATTTTTCTTTTCAAAATTTCGTGCTGTATAAAAGTGATCAAGATTGAATTGTTGAGGCGGTACTTAGACTCGCAAAATTGTATTCCCTCCGTCCTAAAAAAATAAGTCATTCTAGGATTCAAATTTTTCCCTAAAAAATCATCTTACCCTATTTAGAAAGCACATGTGCATGCAAAAATCAATTAGTGCCAAATATAGATAACAAGTATGGGCAGACATGGTCATTTTATCTTTTTGTTAATCTATACTAGAATTTCTAAGATGACTGTTTTTTGGACGGAGGGAGTAGTGCTTTTTGGGATGGAGGGAGTAGTGCAGATTTTTATTCTTAAAAAAAACTAATAAAGATGTTTATTGGTAGTTC | |||||||||
gi|198296414|gb|FL963269.1|FL963269 CCHY601.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY601 5', mRNA seq TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): TCTGCCCGTCTATGGAATTGTTTTTCCTATGGATAATTCATCTGTCTGTTTAGTCTTTTTTGTGTATGTAGAATCCTTTTGACACAGTGCTTTATGAATGTCATGTCCCTGCTCTATAGGATTGGACAGAAGTTTTAGCTTTTGACTATTAACATGGAACTATGGAAGTACATAAGATCTCCCATGCTATTGTACTAAGTACATACTACTTCCGTTCCAAAATGTAAGAGGTTTTAGTTTTACCAAGTTTATAGATATGTACAATATCAATTGAGTTCTATTAAATCCACCAAGAAACATGTCTCGATAGTGCCTTTATCTAGAGAAGTTTGACTTGGGACAAAACTAAAATCTCTTATGTTTTTGGAACGGAGGAAGTATTACTGAATTATTGTGTTTTTTTGATAAATCTTGGATTTCAAATATAACAAATGGAAGTGGCTTCATTTGTTCATACAAAGAATTCATCAATTAATTTGTTCGGGTGTATCGAAGAGAAGTAATGTTCATTTTGATACTTATAATTCATCAATTAATTCTCGTTCAGGTATATTGAGGCAAGCAAAACACGTCTCTACCACTCAGCTGACAAGTTAGCAGCTGCTAGAGCACAAAGTGTTCTGCTGTATGTGTTTGAAAACATACTGAAGTTACTGCATCCCTTCATGCCGTTCGTTACTGAAGAATTATGGCAGGCATTTCCATACAGAAAGCAAGCACTTATGGTACT | |||||||||
gi|198184411|gb|FL895479.1|FL895479 CCGN12033.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN1 TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): AAAAACCAGTCATCCTAGGATTCAAAAGTTGTCCCAAAAAATAAGTCATCCTACCCTGTTTGGAAAGTGTATGTGCATATAAGAATCAATTAGTGCTAAATATGGATGCTAAATAGGGGCAAACATGGTCATTTTACATTCTTGCTAATCTGTCCTAAAATTCCTAGGATGACTAGTATTTTGGGACGGAGGGAGTAGAGCATTAAATGCAGTTGAAAAAATAATTAATTACACAGTCTAACTGATTAGTACGAAATAAATTTTTTAAATCTAATTAGTCCATATTTGAACATTATTTGTCAAGTAATAACGAAATGTGCTATGGTACTAAAAACACAAACTTTTTTCCCAACTAAACACACCTTAGGCAAAAATACTTTCAGTTAGAAAATATAGGTTTGGCTCCCTCAAGAACTGGAGAAGTAAAACTATGAATCATGTTCCCTCCTTAGCATTGTAAACAAAAACATGAGGCTCATATTCAGACAGCTCGCTGGGTATTTTCTAGCATGTCAGGCCTGTTTTAGTTCGCGAATTTTTTTGAATTTTGGTACTATATTATTTTCGTTGTTATTTGTCAATTAATATCTAATTATAAATTAATTAGATTTAAAAGATTTGTCTCGTCGTTTACAGTCAAACTGTATAATTAGTTTTTTTTTCAATTGTATTTAATGCTTTATACATATATTTAAAAATTTTATGTGATGGATAATACAGAAATTTTTTTGAGAACTAAAGAGAGCCGTATGAGCATCTGCCCAGCAGTGCAAACCTGTGTTGCAGCTCAGCAG | |||||||||
gi|198371470|gb|GD043111.1|GD043111 CCHZ22667.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): TCCACAAAGTGTTCCTCCGGCTGGTTCAGAAGGAGCCGTGGTGTATCGTTGCAAGGCCCCCTCCAGCAGCGGCTCGTGCGATTGGTTGTTGTGTTGGGGCATCCCGTACGTTGGTAACAACGGGGTGTACACCGAAATCCGTGAGGAGGGGCACTTCCCTGAGCACTGGGATTATATCTACCATGAGAAGCTGGAATGTGCAGATCGCAGCTCTACGGATAGCGGCTATGGATATGTTTCCAATACTCAGATCGGTGAAGGCACTACCGTTGAAGTCCGTGCAGTTTTCCAGTTTGCCTAAAATAATATATACTCACATCCCAAAGTAAATGCAATCCTAGAGATGTCTTTACATGTCCAGATCCAAAATATCATTAATAAATCTGGATAAATAAATGGTATCTTTAATGAATCTAGTCATTGACGAGGATTGCATTTATTTTAGGGCGGAGGGAGTATATGGAACTGAAATTAAGATATCTATGCTAGAATAAAACATCACAGGTA | |||||||||
gi|197949999|gb|FL694768.1|FL694768 CCGA3967.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA3967 3', m TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): TTCCAGAGGGCAGTACATCTGCTGACTGAAGTCAAATAAGTTCAAGTTTGATCAAATTTATATAAAATAATACTATCATTTTTATATCCAAATAAATTTAGTATGAAAATATATTACATAATTAATCCAATGATATTTATTTTGTAATACAAATATCAATACTATTGTGTATAAATTTGGTCAAAATTGAAATCATTTGACTCCTTGGTAAGTGAGAGTTGCATTCTTTCTTGGACGGAGGAAGTATGAACTAGTACGAGTATATTGCACGTTACAACATGAAAAATGCATTTTATTTCACTTCACTGAACCAACATTTTTTTTATTTCACTATTATTGCTTGAAACTGTTTTTTTTTAATCTTCCGGTGAGAGTTTTTTTAAGTTCTGTTCAATGATTCAGGTATTAGGTGAAGATCCTGGTTCCATGTTGGGGCGGGACTTGGAAGCTCTGATACAAAGAGCAAGGGACTTCAAGAAAGAGTATGGTGATTCATATGTCTCAGTTGAACATCTAGTCCTTGGCTTTGCCGAAGATAAGCGGTTTGGGAAACAACTATTCAAGGATTTTCAGATTACCGTGAAGACCTTGAAATCGGCCATTGAATCAATCAGAGGGAAGCAAAATGTAATTGATCAAGGTATGGGCCTTCTGTGCCGACTTAATTCTTGAAAAAATTGTAACAGTGTCAGAATAAGATTTGTTCTCCCTGCTATAACGACACTGACATTAGAATGCTTGAAACTC | |||||||||
gi|198001286|gb|FL740246.1|FL740246 CCGB16848.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB16848 5', TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): GAACTTTAAAATGATTTTTTTTTAGAACGGAGGGAGTAGTTCTTAATCGATCTCACATCTCAAAGGGAACACACGAGCTAACATTCAAACTTCATCTCAAAAAGGGCAAAAAAAAAAGATAGAAAGAAGAGATACACTCAAGCCACCCGCAATTATTTTGCGTCCTGACGTGACAAAAAGCACGGACACGGACTTATTTTGCGGTGGGTACTGCTAGATCGCCGACCCAAGCACACACGGACGGCGCAGCACACCTAACACTCTCATGAGTTGGGCAGGATCCCCAGGGCCTTGCCGTACTCCACCATGTCGTCGTAGATGTGCTCCAGCGTCCTGAACTTGAACTCGAACCCCGCCTTCTCCAGCTTCGTCGACGGCAGCAGCGCTACCGGCTTCGCCAGGAGGTCGCCGGAGATGTCCGTGTTCACGTTGTACTGCGGGTACTTGGCCGCCAGGAAGCGGGCCATCTCGAGGATGGTCGTGTCGAGGCCGTTGCAGATGTACCTGCCGGCGACGGCCTCCGCCTCGGCGGCGAAGATCTCGGCGCGGCAGACGTCGCGCACGTGCACGAGCGGCACCGAGCCTGAGGCCCTCTCGATGCCCTTGAGCACCTTCAGCTCCGCCTCGTCGCCCGACAGCAGGAGAGGATGGCGGGGACGGTGGTGTACACCTGCCGGTCGGGCGCCTCGCCGACGTGACGGACGGGCACAGGGTCACCAGCTGATGCCGTGCTCCGCCGCGAACCTGGTCG | |||||||||
gi|198311218|gb|FL978841.1|FL978841 CCHY14654.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY14654 3', mRNA TACTCCCTCCGTCCAAAAAAC EST sequence (targeted fragment marked with yellow): AATCTGGACACAGTAAAACACTCCCAGGATGACTGCATTTTAGGACGGAGGGAGTATTGCTATACATGTGACGAGATCTTCAAAATAAGCTTCAAATGTTGGCTTAAATCCCATGGATAGATTAATATATACATAGGTGAAGAAGTCTGCCAGCTTTGAATTTTATTTGTCATTGTAACCTGATCTTGAGGTAATTTAAGGCTTTGTCAGGTCTGTATTTTTTCATCCACCTTTATTGGTTGGTTTGGTGAATTGGTGTATGCACTAATCTGAGTACAGCATGTTTTTGTTCAATTAATTTTGCATATATGCCCAGTTTCTTACCTGCTGACCATGTGTCTGTTCTGTTAGCAGACAGCTTAATTTTTTGGAAGGGAAGTCCAACAAGGCAAACAACGGTTGTACAAAGATGGAGGAGATCAACTTGCTCCTTCATGGCCTGAGAATTTGTCAAGTCATCAATAAAAATTAAAACAAATGGTTCCGTTAGTTTCGTTGGCTAAATACATAATGAGGAAGCACCTGGTGATGTTGGGATTTGTTGTTTGCAAAGCACTATGATCAAGTACCAATGTGCTGGAATTCCTTGTCAAAACACAAAGCTGGATTAACCTCTGAAAATATTGTGTTGCAAACTTAAATGTCATTTAGGCCAATTTGTATTACATAGCTTTATATCAACATGTAAGTCTAGATTCATCATATGGTCTTCTTTACTTCGATAAATGACAAATGTTGAAATGCTT | |||||||||