| mature miRNA: TGTTGCCTCAAGCTTGCTGCC species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198381098|gb|GD049971.1|GD049971 CCHZ29683.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): TCGTCACTTGGGCCTGTTGTTGCTCGAGCAATTACACCTATTATTGAGAAGTGCCTAGCCTCTGTGGTTTCTGATTCAATTCAGAAAGGGGTGGGTGACAAGGTGTGCAATCAGCTGGATAAATCTATTAGTGGAAAACTTGAAGCTACACTTGCCAGGCAAATCCAAATGCAGTTCCATACATCTGTAAAACAGGCTCTTCAGGATGCTTTGCGCACTAGCTTTGAATCATTGCTTGTTCCAGCATTTGAACAATCATGCAAGACAATGTTTGAGCAAGTAGACGGTGCATTTCAGAAAGGAATGTCTGAGCACACAGTTGCTATTCAGCAGCAAGTTGAGGCAGCATATACTCCATTAGCGTTAACATTAAAGGAGACCATCAATTCTGCATCATCAATCACCCAGAGTTTTTCGTCAGAGTTACTTGATGGCCAGCGCAAGCTATTGGCACTTGTTGCTTCTGGGAACGCCAAGGCACATAATACCAATTCGTTGCACCCCATTAATGGTCCTATGGGTGACCCCCAAGAGGTTGAGGCTCCGTTGGATCCGATGAAAGAGCTGGGCAGGCTGATATCTGAACGCAAGTTTGACGAGGCATTTACATGGCCCTACAAAGGAGTGATGTTTCCATAGTGTCGTGGCTATGCTCTCAGGTTGATTTGCGTGCATTATTGGCAATGGTCCCAGTACCACTTAATCATGGGGTTCTT | |||||||||
gi|304511040|gb|HO308886.1|HO308886 CFCB6289.b1 CFCB Panicum virgatum WS4U normalized leaf Panicum virgatum cDNA clone CFCB6289 TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GCACATGCTTTCTTCAAACAGCACGGATGGACAGATGGTGGCAAGGTTGAGGCAAAGTACACATCGAGAGCTGCTGAGTTATACAGGCAGATACTTTCAAAGGAGGTTGCTAAGAGTGCCACAAATGATAATGCCTTACCGTCATCACCTGTCTCGTCTGAGCCACCCAAGCCATCCGATGACTTCCCTGAATTCAAGCTCTCAGATGCACCCGCAGAGAATTTGAATGGGAAGCAGGAGCCCAAGTCGCCAAAAGCACCTCCCCGTTCACCAAAAGCCCCTACCTATCCCACATTTGCCAGTTCCGTAAAGAAGCCCATTGGTGCAAAGAAGGTTGGAGGCAAGACCGGAGGGCTTGGTGTCCGAAAGCTTACTACAAAGCCAAATGAAAGCCTGTATGAGCAGAAACCTGAAGAGCCAAAACCTGTTGTGCCTGCCTTGACGACTACTTCAACTACAAAAAGTGGTCCATCCTTGCATTCACGTTTTGAATACATGGAGAATGAGCCATCAGCTGATTCAAAATCCGGGGGATCTCATGTGACTGGTCATGTAGCACCACCAAAAACATCAGACTTCTTTCAGGAGTATGGGATGGGTAATGGGTTCCAAAAGAAATCAAGCAATGCTTCAAAAACTCAGATTCAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCGAAGGCGATTTCATCATCTCAATTTTTTGGCACTCAAAACAGAGAAGAGAAAGAGGCTCAACTATCCCTTCAAAAGTTGCGGG | |||||||||
gi|304483149|gb|HO283757.1|HO283757 CFBY3411.b1 CFBY Panicum virgatum Dacotah normalized leaf Panicum virgatum cDNA clone CFBY34 TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): CATTTGAACAATCATGCAAGACAATGTTTGAGCAAGTAGACGGTGCATTTCAGAAAGGAATGTCTGAGCACACAGTTGCTATTCAGCAGCAAGTTGAGGCAGCACATACTCCATTAGCGTTAACATTAAAGGAGACCATCAATTCTGCATCATCAATCACCCAGAGTTTTTCGTCAGAGTTACTTGATGGCCAGTGCAAGCTATTGGCACTTGTTGCTTCTGGGAACGCCAAGGCACATAATACCAATTCGTTGCACCCCATTAATGGTCCTATGGGTGGCCCCCAAGAGGTTGAGGCTCCGTTGGATCCGATGAAAGAGCTGGGCAGGCTGATATCTGAACGCAAGTTTGACGAGGCATTTACAATGGCCCTACAAAGGAGTGATGTTTCCATAGTGTCGTGGCTATGCTCTCAGGTTGATTTGCGTGCATTATTGGCAATGGTCCCAGTACCACTTAATCAGGGGGTTCTCCTGGCCCTATTGCAGCAGCTAGCAGTTGACATAAACAATGAGACATCACGTAAAGTTCAATGGATGACAGATGTTGCCATGGCAATCAATCCAGCAGACCCGATGATTGCCGTGCATGTGCGACCCATCTTTGAGCAAGTCTACAGCCAGTTGGTCCACCAGCGGGCACGCCCCACCACGAGCGCATCAGATGGCACCAGCATCCGCGTGATAATGCATGTAATTAACTCGGTTCTGCTTAGCTATAAGTGATACTGTCCATTGGTGGCTGTACAACTGTGGGAAATAG | |||||||||
gi|304498021|gb|HO299760.1|HO299760 CFCA5940.b1 CFCA Panicum virgatum Sunburst normalized leaf Panicum virgatum cDNA clone CFCA5 TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GTAGAGCCTAGAGTTATTCGCCTCGACGCCCCCGTCGGTCGCCGCGCCGTCGCGTCGAATATCTCCGCGTCCGTCGCCCGCTACAACCCCTCGCTCGCAGTTTAATTTATTCCGAATATCATCAAGATGTCAGCCAATGTCGGTGAATCAACAAGTGCTGGCAGCAGCAGCGACGCAGCTGGGGGGAGTTTTGAGTGCAATATATGCTTTGAGCTGCCTCAGGAGCCAATAGTGACCCTCTGTGGCCATCTCTTCTGCTGGCCATGCCTTTACCGCTGGTTGCATGTCCATGCACACTCACCAGAGTGCCCAGTGTGCAAGGCCCTTGTCGAGGAAGACAAGCTTGTTCCCCTTTATGGACGTGGCAAGGACCGTGTTGACCCAAGATCAAAGAACATGCCTGAATCTGACATTCCTCACCGCCCGACTGGCCAGAGGCCTGCAACAGCTCCACAGGCTGATGCTAACAACAACTTCCCCAATGCCAATGCAAACCCATGGTTCATGGGCACAGGAGTCCCATTGGCGAATGCAAGGTGGGGGAATTATGCATTTTCAGCTGCTTTTGGAGGCCTGTTCCCTATGCTTAGCTTCCAAGTCCATGGATTCCCCGATGCCGCTGCTTATGCGCAGCCAGCTGGGTTCCACTATGGGTACGGCCATGGGCATGGATTCCATGGTGGGCATATGGGACACGCTCACGGCGTCCACCGGCAGCACCTTTGGGGCAACAGCAGCAGGCAGATATCTACT | |||||||||
gi|198201602|gb|FL916734.1|FL916734 CCGO10558.g1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO10558 3', mRNA s TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): AGAAGAGCAGCAGTGTCGCAAATCCCAACTCAGAGCTTAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATAGGCAGTTGATGGGAGAGGATCTTTCTGGGCTTAATGTTAAGGAACTGCAGTCCCTAGAGAATCAGTTGGAAACAAGCCTGCGTGGAGTCCGCGCAAAGAAGGACCATCTCTTGATTGATGAAATTCACGAATTGAATCGGAAGGCTACTTTATTTCATCAAGAAAACATGGACTTGTACAATAAGATCAACCAGATTCGTCAAGAAAATTCCGAGTTATATAAGAAGATCTATCAGACCGAAGGACCAAGTGAAGTTAATCAGGAATCACCGACTCCATACAACTTTGCAGTAGTAGAAAACACAGATGTTCCTGTGCAACTTGGACTCAGCACACTGCCACAACAGAACAGCATCGAGCCGTCGACTGCTCCAAAGCTCGGATTGCAGTTAAATCCATGAAACAGAGTCAAATCACTATTCCTATTATGCTGTTGTAAAGAGATGATACTCAGCAAGACAAAACAATGTATTTATGGCAGAGAGATTTGAGATATGAATTTGTAAATGCACTGCAAATAAATTCCAGACTGGAATTGAGCTGTGGAATTCAGTGGATGATTGTTTTCTAGCTGCATATGATGTTAGATGTTCTCATATT | |||||||||
gi|198073066|gb|FL803302.1|FL803302 CCGG4547.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): TTGACATCATGCAAGACAATGTTTGAGCAAGTAGACGGTGCATTTCAGAAAGGAATGTCTGAGCACACAGTTGCTATTCAGCAGCAAGTTGAGGCAGCACATACTCCATAGCGTTAACATTAAAGGAGACCATCAATTCTGCATCATCAATCACCCAGAGTTTTTCGTCAGAGTTACTTGATGGCCAGCGCAAGCTATTGGCACTTGTTGCTTCTGGGAACGCCAAGGCACATAATACCAATTCGTTGCACCCCATTAATGGTCCTATGGGTGGCCCCCAAGAGGTTGAGGCTCCGTTGGATCCGATGAAAGAGCTGGGCAGGCTGATATCTGAACGCAAGTTTGACGAGGCATTTACAATGGCCCTACAAAGGAGTGATGTTTCCATAGTGTCGTGGCTATGCTCTCAGGTTGATTTGCGTGCATTATTGGCAATGGTCCCAGTACCACTTAATCAGGGGGTTCTCCTGGCCCTATTGCAGCAGCTAGCAGTTGACATAAACAATGAGACATCACGTAAAGTTCAATGGATGACAGATGTTGCCATGGCAATCAATCCAGCAGACCCGATGATTGCCGTGCATGTGCGACCCATCTTTGAGCAAGTCTACAGCCAGTTGGTCCACCAGCGGGCACTCCCCACCACGAGCGCATCAGATGGCACCAGCATCCGCGTGATAATGCATGTAATTAACTCGGTTCTGCTTAGCTATAAGTGATACTGTCCATTGGTGGCTGTACAACTGTGGGAAATAGGCCTATTCTATCTTTGTAT | |||||||||