| mature miRNA: TTAGATGACCATCAGCAAACA species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|304533986|gb|HO337770.1|HO337770 CFHC5979.b1 CFHC Panicum virgatum U518 normalized leaf Panicum virgatum cDNA clone CFHC5979 TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): GCCTTAATGACCCTGACAGACCTATCGCTACCCTGCTTTTCTGTGGCCCAACAGGAGTTGGTAAAACGGAGCTTACCAAGGCTCTAGCAGCAAGTTATTTTGGATCGGAATCTGCTATGCTTAGATTAGACATGAGCGAGTATATGGAGAGGCACACTGTGAGCAAGCTCATAGGCTCTCCTCCAGGGTACATTGGCTATGGTGAAACTGGTACTTTGACAGAAGCAGTCAGGAGGAAACCATTTACTGTGGTATTGCTGGATGAGATAGAGAAAGCTCATCCTGATATTTTCAACATCCTTCTCCAAATCTTTGAGGATGGTCATCTGACAGACTCACAGGGCCGCAGGGTTTCCTTCAAGAATACATTGATTGTGATGACTTCAAATGTTGGTTCTACATCAATTTCAAAGGGAAGACGGAGCAGGTTTCTTGAAGGAAGATACTGAGTCCAGCTCGTATGTCGCAATGAAATCCCTAGTAATGGAAGAGCTGAAGGCATTTTTCCGACCAGAGTTGCTCAACAGAATCGATGAGATGGTTGTGTTCCGTCCTCTGGAGAAGACTCAGATGCTGGCCATTCTTGATATCATCCTGAAGGAAGTGAAGGGCAGGCTTTTGTCCCTTGGATAGGCTTGGAGGTTTCTGATGCAATGAAGGGTTTGATTTGCCAAGAAGGGTACGACAAGAGCTATGGGGCACGGCCGCTGCGGA | |||||||||
gi|198007449|gb|FL749786.1|FL749786 CCGC386.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatu TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): CCTCTGATGCATGAGTGGGAACCCTCCATTTCCAGTGGTGAGAGATATGCCCTCATGCCAAGCATGGCATACCCACCACCTGTGAGAGTGTATTTTGATCTATTGCTGAGATCCGTGACAGGCCAGGATTTATCCTATCTGCTTTTATAGCAGAAGTACACAGTTATTAGTATTTCCACTAGTATTTTAGGTACTTTGTGTAGATGTTGGCTCTTTTTGTTTTCAGTTTTTCCAATTGGGGAAAACCGTATTCATGAAGATGCTTTATTTGTCTTCTGGACATCTTGTAATTGCCTTTAGCTGCAGTAGTGTTGTGTCCACATCATGTTTGGTTTCTGATGGTCATTTGGTGTTCCAACAGCAGCAACAGCTGGACTTGCAAAGGTAGCTGGCAACCCAGATAATTACGCATGGCTGGAGGCCATAAACACTCCAGTTAATATTTACATGCGCACTGGCATGTATACTGGTCCACCTGTACAGGAACTTCAGACATAAGAAATCCAAGATGAACCAGATCATCAGGCAGTGCATTACCTGATAGTACACTTCAAATGTAATGCCTTGAGTGTTCTATTTTCATGGTCAGCTTTTCCCCTTTGTTCTCCTTTGTTCAGAAGCTGTTGGGCTTCAGTGAAGAGATAAGTTTTCACAGTAGTTTCTCAGGCAGTTTATTAGTGAGGGGTTCAGGTTCAGTGGCCAGAGCAGCTGTTCAGAGATTGTAGCTTAATTATGTTGTTCAACGCTGGTATGATTTTGAATGCAAAATTTGTTACTGGTGTTGCT | |||||||||
gi|198305925|gb|FL974454.1|FL974454 CCHY12255.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY12255 5', mRNA TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): TGGCTTGCGAGTAATGCCGCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCATGGATTGCGGTCATGACCCATGACCGTCATGGACTGATCATGGTCTTGCG | |||||||||
gi|304512157|gb|HO315188.1|HO315188 CFHA4122.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA4122 TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): GTTTCCTGTTGGTCATTTAAGATGTATTTGTGGTCATCTTTTTCAGGGGAGCCAATAAGGGACTTTTCAGATTAATTTTCCCTAGCAGATTAATTTGATACTTGCTCTGCATGGCTGCATACTGAATGATCTATGGTGAATGGGAGCACCTGTATCCATGTCCTACCAAATCTAATTTGAGATGCTGTACATGTCTGATTTCTGTGTAGTGCAACATTGGATCCATTTTGGTTCATTATCCATGTCCTGCTAACGATGTTCAACCCCACAATATTATTTGCTTCGTGTCAAGGAGCACCTGTGCACTAATGCCATATGGATGCCCAGTGTTTCACAAGATTTTAGGCAATTATTATTGTGATTACCATTTATCAAAAAAAACCTACTGTTTACCAGTAAAGATAACTTAGTAAGTTTATGAGCTAGTGGCTTGTTCTGTTCTTCTGTTTATGAGCTAATCGGCTTTTACTGTTTTCATAATCGGCTTTTACTGTTTCATGCACATATACATATCATATATTAATCAAAGTATCAGTGCCTTCTCATGATTACACAATAGAACTCATGCACATATACTGCAGCTATTTGTTTCTTTTTTATCTACAGGCTTACACAGCTTTGGAGAAAAACATGATATATTCCTTACTAAGAGTAGTGCTTTTGCTGGTTTGGAAATGGGAACGGTGGGTGATACTTCAATCTTATCCTCTAGGGAGTAATATCTTCAAACT | |||||||||
gi|198212841|gb|FL925129.1|FL925129 CCGP1423.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP1423 3', mRNA seq TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): GGATAACTGCAAGACTCTTCCTGATCCCTGCATCGATTGTGAATTCATGATCATCTTGATTGATCTGATCCCAGAAGAGAAGGGTCTACCATCGTATTTTGTTTAATAAGCTTAGCGTGTGGGATCATCTGTTGACAAGATATGAATCTATGATGTTCAGACAGACTAACATTCTATTCTCATGGTGTTCTTATTGGCACTTGAGGCAATTGGTACTGCCTAGAGTATCTTTCACCAATCCTGAGCTACCAATTCAGTGTTTGCATATGGTCATGTAAGAGTTATGAGGAAACGTCGAATCCGAGATAATGTGGAAATGAATCTGGCCAATATATATGTTTATACCTAGGATATATTTATTCTTCCATTACTGTTTTTTTCTTTTCTTCATACAGTCCAAATCAAGTGCGATGTAAGATGAACGAATTATTTACTGCACCTTTTTTTGAACTTGTTGAGTGCATTCACTATTTGTCC | |||||||||
gi|198344564|gb|GD011375.1|GD011375 CCHZ4275.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): TTCGTAGCTACTCTCATCTGCTTTCTCGTTCCTGGCGAGACTGGCTTGCGAGTAATGCAGCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCATGGATTGCGGTCATGACCCATGACCGTCATGGACTGATCATGGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGAGGCATGCAGAAGCAAACTGCTCCCTACCGATCAGAGATTACCACCGCACCGCCGGCCACGACGACCTCGCCGAATGTAGAAGCTTCACGAGGAGGCATGGCGTGCTTCGAAAGTTCTTCCAAGAAGTTGAAGGTAGCTGCACTGCTTCTCTTTGCGTGCTTCTGCCATCGGTTAAAATTTTGCTACTGAGTTTCGTGTGTTGTGTGCAGAAGTGAGAGTGCGTGTTTCGGGGAGATCCGAGTGCGATTGTTCTGTCGCTTGGACGCCCTTCACTCCGTGGAAAAAATGTTCATGCTTGCTCACTTGCTAAAAAAAATTGTTCATCGCTTCATCGTCGTCGTCTCGCGATTTACAGTCCATCCATACAAAAAGTTTTGTAAATATATTTTATTTAATACTCCATGCATGTATCCAAACATTCGATCTGGTGTTTTTGGGTGTAAAAACTTGGGATCTAAATAGGGCCAGTCAGTTTGCAGAGTACTAGTACATAAGAAGTAATTTATAAGAGTTTGAATATGAATGCAAATTTTCCGTAC | |||||||||
gi|197970077|gb|FL712260.1|FL712260 CCGA14608.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA14608 5', TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): AGGGGATGGAGGGTCCGCTGGCTGCGCTGGGCGTGTGACGATGCTCTTCGTGCAGTATTCCCGGCCAACATCTGCTTGATGAAATGCGATAACTTGAAGGCTCTTGCTGATCCCTGCATCGACTGTGAACTCATGATCATCTTGATTGATCTGATCCTGCAGAAGACAAGGGCGTACCACCATATTCTGTTTAATAAGCTTAGCATGTGGGATTATCTGTTGACAAGGTATGAATCTATGATGTTCAGACAGATTAACATTCCATCCTCACTGGTGTTCTTATTGGCATTTGAGGCAATTAGTTTGCTAAATATGTAATTGGTACTGCTGAGCTACCATTTCATTGTTTGCACATGGTCATGTAATAGTTATAATGCACCTTTTTTTTGTACATCGGTGCATATACTAGAGTAAAATGGTTCCTGGATAATGTGGAAAAGAATCTGGCCAATATATATATGTTTATATCTAGGATATATTTATTCTGGCTTTGTTTTCTGGATAATCCTCTCTTTGTTTTCTGACTTAGCGGGCATTGCTCTGTAGTATGTTGTTCAAGTAATAAAGGAATATAATTCACAAGGTGAAGAATTCTATCACAATGTACCCATTCAATTGCCCAATGCCCGTGTCATCTGTTTGTTGTCTTCTCAGTTAGTGGATATGTCTGTAAGACAACTAGCATCAAAGATGGTGTAAATCAGTTTGATCTTTGGCAGAGGAAGCAGTAGCTTGTTTTCAGGCATTGGTTGACTTTCTATGCTCCCTTATGAGCAGCAATGATGA | |||||||||
gi|198322091|gb|FL990657.1|FL990657 CCHY20883.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY20883 5', mRNA TTAGATGACCATCAGCAAACA EST sequence (targeted fragment marked with yellow): CTAGACTGGCTTGCGAGTAATGCAGCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCAAGGATTGCGGTCATGACCCATGACCGTCATGGACTGAACATGGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGAGGCATGCAGAAGCAAACTGCTCCCTACCGATCAGAGATTACCACCGCACCGCCGGCCACGACAACCTCGCCGAATGTAGAACCTTCACGAGGAGGCATGGCGTGCTTCGAAAGTTCTTCCAAGAAGTTGAAGAAGTGAGAGTGCGTGTTTCGTGGAGATCCGAGTGCGATTGTTCTGTCGCTTGGACGCCCTTCACTCCGTGGAAAAAATGTTCATGCTTGCTCAGTTGCTAAAAAAAAAATTGTTCATCGCTTCATCGTCGTCGTCTCTATTCGTCATCATCATTTGAGATATAGCTTCTGAATCCCCCAGTTACTCTCAGAGCTATTTGATTCTCCTACATGATTTGGTGACGAGCTGATCATGAGCAC | |||||||||