| mature miRNA: TTGACCAAGTTTATGGAAAAG species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198342901|gb|GD007190.1|GD007190 CCHZ1517.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CCCGGTTGAGAAAACCCTGGTTGACCCGGAGATGACCGAGGCCCCTCCTGCTTCTGCTTAAACCCGTCATTTAGAACCCCGTCGTCCAGGGAACCCCGAATTGTCAAAGCCCCTTTTTTATGAACTTGGACATGTTTGTCTCCCAATTTTAGATCCCTTTCGTGCCCCGGGGATTTTTTTGACTGATTTTGGGCAATTTTTAAATTCTTGCCCCCCCGGG | |||||||||
gi|59873176|gb|DN152325.1|DN152325 5231_B04_D07 Switchgrass callus cDNA library Panicum virgatum cDNA clone 5231_B04_D07 5', mRN TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTTGGCCGCCGCCAGGCACCTGATGCAAGCAGGCCACCGGCCCCCTCCCATCTTCGGCGGCAGTGTCTCTCCGAGCTCCGGCCCTCCGCCCCCCTCTCCGGCAAGCCCCTGCCAAAGCCATCATCTGTCTCCACACGGGCCGCGCGGTCGACAGGCACCCCTGTTCTGCGCATCCAAGGTAGCAGGGTCGCAGGGGGGCCGGTCAAGCTGCGAGGCAGCCGGCGGCTCCACCTCCGTTGTCCGCTCTGTGGCAGGTTGCAGCCCGCAAGGTAGCTGGCAATACCTATGTCAGTCGTCAGAACTAGCAACAGGGCGCCAGATGCAAGCAACAATGATGACATGAAGCTGAAACTGTGAAGCAAGTGCACAACAAGGCATATAAAATTCAAAGAAAAGAACAATATTAGTGGCTGATTCACCAGATATGTTTGTAACTTGTTACTTGTGATGTACTCCATATGTTTCAAATTATAAGTTATTTCAAAAATCTTGTAGAGTCAAATCATTTTAAAATTTGACCAAAATTATAGAGAGAAACACAAAAATTTATGACATCAAATATATATACTATAAAAATATAGTTAACAAAGAATTTAATGATACTTATTAGTATCATAAATGTTATTATCTTGTTATATAAATTTGGTCAAACTTGAAAAAATTTGACTCTCCATGATTTTTGAAATGACTTATAATTTTGAACGGAGGGAGTATATTGTATGGTGA | |||||||||
gi|197948344|gb|FL694933.1|FL694933 CCGA4049.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA4049 3', m TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): AGACATGATTTATTATCCTTTTGCGTCAAGCAGGGATGCATGAGCAGTGAAACTCATGTTGATTCTGTCTCTACCAGTTGCTTTTTGTGTACCCTTTGTCTGGCAAGAAGGGTCCGATGCTTAGGATTTGGAGTCTGCATAGACCTCATCTCGCAAACTGTGTAGTATGGTCAGTTAGTATTCTAAGCTACCAGCTAGGTTGTTTGGTAGCTATGGATACTTGTTGTTGCATGTTGATTTATAGATGCCTCAGATGTGCTGTAATATTGCTGCTCCAAATGCCGGATAGACACCTACTCCCTCCATCCTGAAATGTAAGTCATTTTGCTTTGTCCTAAGTCAAAGTAGTCTAAGTTTGACCAAATTTATAGAGAAGAATACTAACATCTAAGACATCAAATAAGTAAATTAAGAAAGTATATTTCATTGTTGATCTAATTATTCTTATTTGACATTCAAAATATTATTATTTTTTCTATAAACTTGGTCAAACATGGAACAATTTGATTTAAGACAAACCAAAATGACTTACATTTCAGGATAGAGGGAGTATATATATATCCTGATGGCAGGATAAATTTGTGCTTGGATTGAAACATGGTGATTGGATGTGTTGTGATGTTCACGATTGAGATGCCAGACAAACACCATAGGAGAGTCTGGTGATGCGGATGTCTTGTAATATTCACTATTCAATTGCCGGTCAGACACCTAATGGCTAGGATAGTTTGGTGCTCGGATGTGTTGTAATATTTATAATTCAAATGCCGGATAGACACCTATATTAATCTGTTGATGGTGTGCTTGCTTCT | |||||||||
gi|169725223|gb|FE655567.1|FE655567 CBYZ12046.b1 CBYZ Panicum virgatum Kanlow 4 day old seedlings Panicum virgatum cDNA clone CB TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): GACCAAGTTTATAGGATCTAAAATTAGATGAACTAACAACAGCAATGCTATTCTACATCTAAGGTGTAGTGGTTATTCTACACCCAACGTTCAAATTATTGACCAAATGACCAGAAGTTACTGAATTAAATTGCCGTAAGACTATCAGTAATTGGGCGCAGTAGTTATTACTGAATTTGTTCAGTAATTCGTTAGGTGTAGCGACACCTAGGGTGTGGAATAGCACATGGAACAATAGATAATTCATGGTGGATTTAATGAAACTGATCTGGTGCAGTAGATGTTAGTGCTTTTTCTATAAACTTGGTCAAAATTTGAGAAGTTCGACTTAACAAAACTAAAATGATCTTACATTTTGGAAAGGAGTACCACTGAATTCTGTGTTTATATGCCTCACACTAATGTGCTTGCTAACCTTAGATTTCTCATCCATGTTACAAATTCATTGTTTTTGGTTTGCTCAGTAAAATAACAGTATATCTCTTTTTATGATACCTAAATCCATGCCATGACTGGTGACTGCTTTCTGCACGTACGAGCATTCATGTTTATCATATCCCTGACTTTGGTTCATAAGAATAGATTGTGCTCCTGGGATAAATATATGCTTGCCTCTTTTCTGTTCCCTTTATCTTCCAGGTGGAGGATTTGCAGCGACAACTCGAGTCTGCAACCAAGGAACAAGAAGCATTGATTGACATCTTCTCAGAAGAAAGAAATCGTCGGGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGGTG | |||||||||
gi|198307724|gb|FL976901.1|FL976901 CCHY13602.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY13602 3', mRNA TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): GTGGTAAATTTCTGCTTTGTTCTTTAAACTTGGTCAAAAATAGAGATGTTTGACTTAGGACAGAGCTAAAGTGAACTATAAATTAGAATGAAGGGCGTTTGTCTTTAACATGATATTGTATGCTTTCCTGACAGAGAACAGGAAAAAAAAAGAAACAGTTGCCATAGCTTTGCTAAAGGGCAAAAGCTCCCACTCTCTTTCGTAATTACTGAAGGTACATATGAAAGTGCAGTATTGGGGACTTTGTTGTGTGCTTTCCTGACAGATCTGATTTTTTTTTAAATAGTTGCAATCTGTATCTTTAAATTTGTTTCCTTCTGTCTGTATTATCTGGTCTTTTCTTATTCAAAACTTATCATTCTGGAGGTTGTCTAACGCATCTGCAATAACATGATGCAGCATTTGCACCCAGGTTATCTTCCCACTGGTGGGTCGTTGCATCACTTCTATACTGGCCCCTATTGTAGAGATGAAATATTTCTCACCCAGGTGTTGAAGTTCATGCGGCAACAACTTGGATCACCATTTTCCAAATGATCCTCAGCATCAAGAACCCTGGATGGCAGTCTTTGGTTATCACCTAATGGATGTAAATATGTGTATAACGCAGCAGAGGGGTGTATTTGTGGTCAAAGCCGTAATGATGGTGGGCCCTTAGTTGCATTGCATCCCTTTTGTTGCTTTGTATAATCATGCGCAGATCAAATAAAGGTTTTGCGTTTTTGTTGAGAAATATTGTGCCGGACTGAGGTCTTCAATATTT | |||||||||
gi|304524573|gb|HO320791.1|HO320791 CFHB1988.b1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB1988 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): GGGTCCAGGAGGAGTGGACTGTCCCCTCCAAGCATCAGATCTTTCTCCCATGGCCTCTTGGTCCATCAGCTCTGATGTTACGCAGGACACTAGCCAACCTTTACTCTGTAAGGGCATTTTCTGAATGTAATTGTCTGTCTGATTCTTGTGAATCTCATGTGTTTCAAGCAGACCCTAGATCGGTACAAGAGCAATGCCAGATCACATCAAGGTGAGACATTCTTTGAAGAATGCTTGCTCCTCCAAGTTTCCAGTAGTCGCCGTTTCAACTTTCATGTGCAACAGCCCAAGATTCCACGGAAAACCAAACTGCACTCCATGTTAATTCTTTTCAAATTGTAAGTCATTCCAACTTTCTTGAGAAGTCAAACTATTTTATGTTTGACCAAAATTATAAAAAAAATTACAAAGATTTATAGCACCAAATAGATATACTATTAAAATATGTTTAATGAAGAATCGAATGATACTAATTTGGTATCATAAATGTTTGTACTTTATTGTATAAATTTGGTCAAATTTGAAACGGTAATGCTACAGTATGGACATCCGGAATTTTAAAAAAAAATCAGACACTCTGATGTTGTTTC | |||||||||
gi|304479798|gb|HO271775.1|HO271775 CCTZ1752.g1 CCTZ Panicum virgatum Pathfinder normalized leaf Panicum virgatum cDNA clone CCT TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CATATACCACATTAAAGAAGTAGCTATGAGTATATATCATGATTGGTCTATTGATGCTCATTTGAAATCGTAAATATTATTGTGCTTTTCTGTAAACTTGGTCGAACTTATAAAACTTGACTTGAGATGAACTCAGAATCTGACGGAGGGACTATGTATTTTAGCTTATCAGTGCAGTGTCCCGTACTCTGTGTCTGGAGCCTTTACATTACCTGAACTGTCCAATGCTTTTCTTGCTCTTTTTTTTTTTTGTATACTTTGCATCATGAGTTCATCATCCTAACCAACTGAACATTGTCCAGAGTGGACTATTCTGAAAGAAGGATTTTGAGAAGACTGAAGGCGGGACGGGGACTAAATAATGTATTGTCCAAGATCCATCAATACTCTCCTGTAAATGCATCGTTCTAGTTAGATGTTGATCTGTAAAATGAACTAGAGTCACCCTCCAAGGAGGCTAACATTATCCAGTCACCTAGTGCCATTGAAAACAGCCTACTATGTATTCATTATGACTTGATGCGTATTGTGCTGCTCAGGTAACCTAAACTATCTGTGTCAGGTTCCGCTAGGCCATTGCAAGTAGTCAAAGTACTCTCCTTGATGGGACATACATGCCCTTCTGCTGTCCGAATCTATGAGAAACTCGAGGCGGGCTTGCGTTTGACTGTATTTCGCATGATCCAAGTAAAATGGAGGCGAAGCTGGCCGTACGAACT | |||||||||
gi|197972258|gb|FL714974.1|FL714974 CCGB2494.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB2494 5', m TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): ATGAAGGTGGCGGCCAGGGTTGCCGACATCTACCGCGTCCTCTACGGGGCCGCGCCCAACACGAAATCCGTCATGCTAGAGCTGTGGCGTGATCAGCATATCGAGTACCTGACACATGGGCTGAGGCATCTCGGGCCAGCCTTTCATGTTCTCGATGCCAATCGTCCATGGCTGTGCTACTGGATGGTTCATCCACTTGCTTTGTTGGATGAAGTACTTGATGATGATCTGGAGGATGATATCGTGGACTTCTTAGCTCGATGTCAGGATAAAGATGGTGGATATGGCGGTGGACCTGGGCAGGGCGTAGTTGTGGTGGACGGGAGGCCGGGGACTTGGCTCCCGGCGGCGGCGAGGACGCGACGCCATCCTGACGGCCGGCGTCGAGCAAGAGCAGGGGAGTGCGGTTACAGGGAAGGAGCGGGAGCCCTGAGATCCAAATGATCTCCAAGCTTAACCTCTATTCATTCTCCCAGTACATTAGTTATAGGTTACAGATTCAAACACAACACAAGCGCTAACTGGCACGACGTGCGTGGGCGCTTACAAATTCAAACACAACACAAATGCTAACTGACAAGTCGAGGACGCGTTCCTGGCTTCTCTTCTCAGCCACGATGGTGTCGTTCATACACGCTGCCGACCATAACATCATACTTATTTGGCATAAAAAATATTGGCAGCTTTTTGTGTAAACTTGGTCAAACTTAAAATAGTTTAACTTTGGACAAAACTAGAATGGCATTCTTTTGGGGCAGAGGGAGTACATTTTTAGGATGCTTTCATTAACCTTTTTACTACTGGGGTTT | |||||||||
gi|198221307|gb|FL934972.1|FL934972 CCGP6978.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP6978 3', mRNA seq TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CCTACCTCTTCACCAAGAACAAGAAGCTGCAGCAGGACTTTGTGGCGAACGTCCCCCGCGGGAGGAATGCTTGTGAACGACGTCGCGCTGCATCTCACGAACCCGTACCTCCCCTTCGGCGGCGTGGGCGACAGCGGGACGGGCAGCTACCACGGCAAGTTCAGCTTCGACTGCTTCAGCCACAAGAAGGCGGTCCTGATCCGCGGCTTCGGCGGCGAGGCGGCGGCGAGGTACCCTCCCTACACGCCGGCGAAGCAGAAGATCCTGAGGGGCCTCATCAAGGGCAGCTTCATCGCCCTCGTCCTGGCGCTCCTGGGCTTCCCGAGGGAGAGGCGCTAGGCTAGACGACCCCCCTTCCAGTTCAGTTCGGTACAGGCTTTTGCTCGTGTTCGTCCGGTGCAGATATGCTTCATGATGGATTCAATGAAACAAATTTGATATTATAAGTATTATTATTTCTTTCTATAAATTTGGTTAAAATTTTCC | |||||||||
gi|304530521|gb|HO328169.1|HO328169 CFHB6085.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB6085 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): AAAAAGTATCAATACTGTCTTCCATATCGTATTTAAGCTCTGATGTGTTATACGAGCAGCTTACAAATGTGGGGTTATTGCAGAAGCAAGCTTATTAGTTACTTTCAAAAGAAAACAAGTTGTGTCTCTTGTATACTAAGAGCATGCAAGCTCGTCTAGTCATTTTCAAAAGAAAAAAAAATGTGAGCAGCTTAGAAATGTGGGTATTGCAGAAACAAGCTTATTTGTTACTTTCAAAAGAAAACAAGTTGTGTCTTTTGTATACTAAAAACATGCAAACTCGTTTAGTCATTTTCGAAAGAAAAAAAAATGTGACTTCCCTTCCTACCATTTTAACCGATCTGACTGAATAAATACAATATCAAAACATATTTGATGATGGATCCAATGAAACAATTAATTTGATGTTGTAGGTATTGAACGTTTTCTATAAACTTAGTCAAAATTAGGAAAGTTTGACTAGGATGAAGTGAAAACGAAGTATGATGTAGAATGGAGTACAACCTACGGATATACAGATATTGCTTGTTTGTATACTGTTATTAATTGTTGCTACATGAATAAGCATTGGCTGAAGGGCAAGGC | |||||||||
gi|304488976|gb|HO289199.1|HO289199 CFBY783.b1 CFBY Panicum virgatum Dacotah normalized leaf Panicum virgatum cDNA clone CFBY783 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): AGTGCAGTTTGCACATGAAGCTTAAAAAGTTGTCGTCTCCCAGATGTTACCCTCCGGGCCAAAATACTCTGTTTTCTAAATGCGGGTCATACTTTTGTGCCAAGTCAAACTTCTCTAATTTTGACAGGGTATATAACAAAATGTATCAACATATGCGGCATCAATTTAGTTTCATTAAATTCACAATAAAATATGTGCTGATATCACATATATTTAGTATTATGGGTGTTAATATATTTTTATTTAAATTTGGTCAAAGTTATAAAAGTGTTAGGACTATATTTTGGACCGGAGCGAGTACTTGATTTGGATATGCAATTGCTTTGATGCGACCGTTGACCACTATGTCTTCTAAAAATACATGGTTTATAAATTTATGCCATTATTGAAGTACTTTTCAAATATGCTCATATGATTTCATGTTCCTAAGCTAAACATCTTAAAAGTTATTGATAGTCGAAGTTTACACAAGTTTAACTAGCTCTTGTGCAAAACAGCAATTAAGTATTTGTGAGCTGAGTATTACTACTGCTTGGTTTCTATTCGTTTGCTAGCTATGAAATTTCTCTATTTCAAATGGGCACGAGTTAACAAAATGCCATAAAAATAACTCGCTAGGGGTTGAGATGTACATTTAGCTTTTAGCTGTTGAAGTTGGTAAGAAACTAAGAATCCAACCCAATATTCCTTGTGCCCTAGCTAGCGTTTACTCGGGGACATGTTCAGTTAATTCATTACTACCGGGCCACTAACCGTTTGCTTGTGCATCACTATCACTGGCCTTATTCTTTGTTGG | |||||||||
gi|304448879|gb|HO244602.1|HO244602 CCTW1342.b1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW1 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): TTAACTTGGAGGGACTTTTAGATGGTGCTAGCCGTGATGTTTGGGTCCCACTTGAAAAAGTAGATTCAGGAGAGATCAGGCTTGAAATGGAGCCTATAAAGAATGATCACAACAATACCATGCAGAGCTCAAGTAGTAAAGCTGGAGCTGGTTGGATTGAGCTGGTTGTAATTGAAGCCAGAGATCTTGTTGCTGCCGATCTGAGAGGCACTAGCGATCCTTATGTCAGGGTGCAATATGGGAACAAGAAGAAACGAACTAAGGTTAGATTACAAATTTATCTTGCTAAGTTTACATGAGATCTCTGCCTAATCGGAGCTGCTAGTCATACTGATTTTCCGAGCAACTTTGCCACACTGTGCTGGATTAGTAGTATCTGGCATTATTGGTGCTTATTGTTTACTTCAGATCGTAGAACACTGTTCTTAGCTACTCCCGGCTCCCGCCGTTCCAAGACGTGTTAGCTTTGTCCTAAGTCAAACTTCTATAACAAATTTACCGAAAAAGTATTAATGTCTAAAGTACCGAATAAATGTATTATCAAGCCATACACATATTTCATGGTGGATTTGTAACGAAACTAATTTGATGTTGTCGATGTTGGTGCATTTTTTCTATAAACTTGGTGAAAGTTCGAGAAGTTTGACTTGGGATAAAGCAAAAGCATCTTACATTTTGGGACAGAGGAAGTATAATGAAAGCACTTCCTTGGTAATGCAAGGACGCTTGTCACTTTTTAGTCAA | |||||||||
gi|198105851|gb|FL832764.1|FL832764 CCGH17522.g1 CCGH Panicum virgatum late flowering buds + seed development (L) Panicum virgat TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): ACGCCTCCTCCACTGCCAAGGCGGTGGAGCACGCGGCGGCGCCCGGAACGCGCCACGGACGACGTCGGCGGCGACATCGCCCGCGTGCCGCCGCAGGCGGCGGTGTTCTTCTGGAGGATGCGGTGCGCGTCGGCGGGAGCCTGCCGTTCCCGCGCGCAGCGCCCCACGGCGAGGCAGCGGCGGCGGATCAGCAGGCAGCCCCGCTGGAGCTGCGCACCGTCCGCGCCGTTCGCGCCGTCGAGGGGTCCAGCTTCGTGCTGTGCCGCGGCGGGGCGCCCGGCGGCTCCGCCGGCGGCGGCGCCGTGTACGGGTGCCGCGGGGTCGTCGGCCCGGCGAGGGCGTACGTGGTGGACGTTGCTGCCGGGGAGCGCGGGGACGCGGTGACCGCGAGTGTCGTGTGCCACGCCGACGACGGCGCGTCCAAGTCGAAGCTGGGGCACGCGGCGGCGGCGCTTCGCCTGCTCGACGGGAAGCCCGGCAGCGTGGCGGTCTGCTACGCCGTGCCCGACGCGCAGATACTCCTGGTTAAGAGCAACAAGGTCCCGTCCCCGGCGTAATACATGCTGGCGCTATGAACTTGTGATGCAGCAACGCTACTAGTACTACATCATTTGTAACGGTGTCGTGTTTGTTTTTCTTTTTGGCGAAGAGCACGTGTGTCAGTGTGCTTCTCCATTTACTTTTTTTTTTTAAATTTGGTCGAGTGTATGTGCTCTCTCTAGAGTGAGGAACGTCAGAATAAAGGCCGGGTCCATCTTCTTAT | |||||||||
gi|198144829|gb|FL863623.1|FL863623 CCGI8015.g1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI80 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): TTCCAATGGATGAGTCAATTCGTCTATGGAACTCAAATACTTTCAGGGATGACGCTCCTCCTTCCTCTGACTCCTCCGATTCAAAGGGCCCTCCCATTCCTGGTGTCCTAGAAGACACCAAGGAATTCATCCACCAGCTTCTCCGCGAGAAGGACGAAGCTCGGCAAAATTATTCCCAGGAGACCATCAGATGGCACAGTCTGATCGGAAGGTTGTCCGAGCCCAGCTCTCCGCCGCCGACTCCAGGGTTGCTTTCCTGGAGTCACAGGTCCAGGCCCTCCACGCTGCAGCCGCCACCGCAACTGGCTCAGTGAACGCACGCGGCGACACCACTGCCGCCCGCCTGCGGGACATCCCCCGCCACATCCGAGAGGTCGCCAGACACGGGGTCCGCCGGGGTGCTGCTGTGGCCCTCGCCACAGCCCAGTACCAGTTCGGCCACGACTTCCTGCAGGTGGAGCCGGTTAACCTCCCGTTGGGCAGCGAGGACTGGTGGGTGTTCGAGGAGCTCGCCGACGACATGGAGATGGCAGCCACAGCGATCTCCGAAGATATTAGTATAGAGGCGATCATCAGCAATGTCTTCGTCGATGACTAGATTTCTAGGAGTAGCATCTGGATTTTTAGGAGTAGCTTCTAATGTATCAGCCTGATCATCTGATCGGCCTTTTGTAAAAACATGGTCAATGAGTCAACTCTTTTTCTGTC | |||||||||
gi|198074652|gb|FL803350.1|FL803350 CCGG4571.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): GTCGCCTCGGGACGAGGCCGACACCGCTCCCGCTGCCAAGGCGGTGGAACACGCCTCCTCCACTGCCAAGGCGGTGGAGCACGCCGGCGGCGCCCGGAACGCCGCCACGGACGACGTCGGCGGCGACATCGCCCACGTGCCGCCGCAGGCGGCGGTGTTCTTCCTGGAGGATGCGGTGCGCGTCGGCGGGAGCCTGCCGTTCCCGCGCGCAGCGCCCCACGGCGAGGCGGCGGCGGCGGATCAGCAGGCAGCCCCGCTGGAGCTGCGCACCGTCCGCGCCGTTCGCGCCGTCGAGGGGTCCGGCTTCGTGCTGTGCCGCGGCGGGGCGCCCGGCGGCTCCGCCGGCGGCGGCGCCGTGTACGGGTGCCGCGGGGTCGTCGGCCCGGCGAGGGCGTACGTGGTGGACGTTGCTGCCGGGGAGCGCGGGGACGCGGTGACCGCGAGTGTCGTGTGCCACGCCGACGACGGCGCGTCCAAGTCGAAGCTGGGGCACGCGGCGGCGGCGCTCCGCCTGCTCGACGTGAAGCCCGGCGGCGTGGCGGTCTGCTACGCCGTGCCCAACGCGCAGATACTCCTGGTTAAGAGCAACAAGGTCCCGTCCCCGGCGTAATACATGCTGGCGCTATGAACTTGTGATGCAGCAACGCTACTAGTACTACATCATTTGTAACGGTGTCGTGTTTGTTTTTCTTTTTGGCGAAGAGCACGTGTGTCAGTGTGCTTCTCCATTTACTTTTTTTTTTTAAATTTGGTCGAGTGTATGTGCTCTCTCTAG | |||||||||
gi|198307723|gb|FL976900.1|FL976900 CCHY13602.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY13602 5', mRNA TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): GTTGTAAATTTTCTGCTTTGTTCTTTAAACTTGGTCAAAAATAGAGATGTTTGACTTAGGACAGAGCTAAAGTGAACTATAAATTAGAATGAAGGGCGTTTGTCTTTAACATGATATTGTATGCTTTCCTGACAGAGAACAGGAAAAAAAAGAAACAGTTGCCATAGCTTTGCTAAAGGGCAAAAGCTCCCACTCTCTTTCGTAATTACTGAAGGTACATATGAAAGTGCAGTATTGGGGACTTTGTTGTGTGCTTTCCTGACAGATCTGATTTTTTTTTAAATAGTTGCAATCTGTATCTTTAAATTTGTTTCCTTCTGTCTGTATTATCTGGTCTTTTCTTATTCAAAACTTATCATTCTGGAGGTTGTCTAACGCATCTGCAATAACATGATGCAGCATTTGCACCCAGGTTATCTTCCCACTGGTGGGTCGTTGCATCACTTCTATACTGGCCCCTATTGTAGAGATGAAATATTTCTCACCCAGGTGTTGAAGTTCATGCGGCAACAACTTGGATCACCATTTTCCAAATGATCCTCAGCATCAAGAACCCTGGATGGCAGTCTTTGGTTATCACCTAATGGATGTAAATATGTGTATAACGCAGCAGAGGGGTGTATTTGTGGTCAAAGCCGTAATGATGGTGGGCCCTTAGTTGCATTGCATCCCTTTTGTTGCTTTGTATAATCATGCGCAGATCAAATAAAGGTTTTGCGTTTTTGTTGAG | |||||||||
gi|197973801|gb|FL721329.1|FL721329 CCGB5885.g1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB5885 3', m TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): TGGATTTAAAGTCATTAGCTGTCCTTGGAGTCGCAGAAATGACAGATGAAGCTCAACACTATAACGTCCTCCTTGGTGTAAGAATCGCAATTCCTTCAAAGGTGACAACTGGCTCTTCAGAGGAACCAACATCGGCAAACTTCAGTATAGTCTCCCAAAGAATGTGAGCCGGAGGGCGATTCTCATCCCCGACAAATTGAGTATTTGAAGTAGGCACATGAAAACTTAAATCCATGAGCGAATCTTTCTCATTGGCCCCAGTAGTATCATCATGATGAAACTCTAAGAGAACATCTGTTTTTCCTTGCATCTGGGTTTGGGCAACATCTGGTAGAGACACTTCAAATGCTTGCTTTGAACCAACCATGAAGGTAAGCATGTTTTCATCTATATCAATCCCTCCCCAATTGTGACCACTAACAGAAAGCTGCTTTTCATCTGGTGTGACGCCCATATTCTTTTGTATGAAGTTGGTCAAACTGCTTACATCCTGTTCACGGAAGCCAATAAACCTGTAGAACAGGCCATCTTTAATCCTGACTCCAAGTTGATATGCTCTTGGGACTTTCATCCATCTAACTGAGGTTACATCAGCTTTGTCAATTTCAATGGTCTTTCCTCCACCTTGTCTCTTCCATGCAAGTCCACCAGAATGCACTTTAAATTGACCGGGGTTCGTGCCGCCGCGCCCTCCGAGGAGGATGTTGTTGAAGTGGTGGCCGTCCGTCATCTCCG | |||||||||
gi|198074653|gb|FL803351.1|FL803351 CCGG4571.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): ACGCGCCACGACGACGTCGGCGGCGACATCGCCCACGTGCCGCGCAGGCGGCGGTGTTCTTCCTGGAGGATGCGGTGCGCGTCGGCGGGAGCCTGCCGTTCCCGCGCGCAGCGCCCCACGGCGAGGCGGCGGCGGCGGATCAGCAGGCAGCCCCGCTGGAGCTGCGCACCGTCCGCGCCGTTCGCGCCGTCGAGGGGTCCAGCTTCGTGCTGTGCCGCGGCGGGGCGCCCGGCGGCTCCGCCGGCGGCGGCGCCGTGTACGGGTGCCGCGGGGTCGTCGGCCCGGCGAGGGCGTACGTGGTGGACGTTGCTGCCGGGGAGCGCGGGGACGCGGTGACCGCGAGTGTCGTGTGCCACGCCGACGACGGCGCGTCCAAGTCGAAGCTGGGGCACGCGGCGGCGGCGCTCCGCCTGCTCGACGTGAAGCCCGGCGGCGTGGCGGTCTGCTACGCCGTGCCCAACGCGCAGATACTCCTGGTTAAGAGCAACAAGGTCCCGTCCCCGGCGTAATACATGCTGGCGCTATGAACTTGTGATGCAGCAACGCTACTAGTACTACATCATTTGTAACGGTGTCGTGTTTGTTTTTCTTTTTGGCGAAGAGCACGTGTGTCAGTGTGCTTCTCCATTTACTTTTTTTTTTAAATTTGGTCGAGTGTATGTGCTCTCTCTAGAGTGAGGAACGTCAGAATAAAGGCCGGGTCCATCTTCTTATAAAATGCATAAATATTTTCAGAGGCGC | |||||||||
gi|169695018|gb|FE620681.1|FE620681 CBYY3002.g1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY3002 3', mRNA TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): TCTTATCTGATTTTTTTAGGATCCGGTAGTAGATCTCAGCCTGGCAGCATTTTCAGATTGATGTTTGCTTTATACGTGGCAAGCCCATAGATGTAACAGATGCATCTTCATCACAGAACTAGCAACTGGGCGCCAGATGCAAGCAACAATGATGACATGAAGCTGAAACTGTGAAGCAAGTGCACAAGGCATAAAAAATTCAAAGAAACGAACAATATTAGTGGCTGATTCACCAGACATGTTTGTAACTTGTTACTTGTGATGTACTCACTCCGTTCCAAATTATAAGTCATTTCAAAAATTTTGGAAAGTCAAACCATTTCAAAATTTGACCAAAATTATAGAGAGAAATATAAATATTTATGACATCAATAGATATACTATAAAAATATAGCTAATAAAGAATTTAATAATACTTAATTAGTATCATAAATATTATTATCTTGTTATATAAATTTGGTCAAATTTGAAAAATTTTGACTCTCCAAGATTCTTGGAATGACTTATAATTTGAAACGGAGGGAGTATATTGTATCGTGATGATCTGTAATTTTTAGTATGTCTGAAATCTCAATGAAATAAGGTATGGATTAGTTTC | |||||||||
gi|198157865|gb|FL871600.1|FL871600 CCGI12625.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI1 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CTTCACTTTACTCACACCTTTTCCATCATCTCTCGCGCTTGCAATTGACCTCCTCTATCTCCAATTGTCCAAGTTTGAAACCTCATACCCGCCCACTAATCCTATAACACAACATGCCCGGCTTCGCACAGGCCTCAGACCTCAATGCCTGGTCCGCGCTTCAGGACCACCACCAGAAGCTTGGCAAGGACATTGTCTTGAAGGAGTACTTTAAGAAGGACCCTCAACGATTCGAGAAGTTCAGCCGTACTTTCAAGAACGATGCCGAGAACTCCGAGATCCTGTTCGACTTTTCCAAGAACTTCGTCACTGAGGAGACACTGAAGCTTCTTGTCGAGCTCGCAAAAGAGGCTGGCCTCGAAAAGCTTCGCGATGACATGTTCGCTGGTGAGAAGATCAACTTCACTGAGAACCGTGCCGTCTACCATGTCGCACTCCGCAACACCTCCAACCAGAAGATGGAGGTTGATGGCAAGAGCGTCGTCGAGGACGTCAACTCAGTTCTTGACCACATGAAGGAGTTTAGCGAGCAGGTCCGAAGTGGCGAGTGGAAGGGATACACTGGCAAGAAGATCGACACCATCATCAACATTGGTATCGGTGGTTCTGACCTTGGCCCCGTCATGGTCTCAGAAGCCCTCAAGGCCTACTCTCAGCGCGATCTCAAGATCCACTTCGTTTCCAACATTGACGGAACTCACATCGCAGAAGCTCTCAAGGACTCCAACCCCGAGACCTCCCTCTTCCTCATCGCCTCCAGACCTTTACCACAGCCGAGACGTCACAA | |||||||||
gi|304512932|gb|HO312927.1|HO312927 CFHA2869.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2869 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CGTACGTTTCTCTATAGCAATTGGGAGCAAACGAAAGGGAGATGTTGATTGGATTCGCTCTCTCTCTTGAGAGGGAGATACGTGGATTCGTAAGATCTCAAATTTAAGCTCTTCAAACGTGGTGTAGCTTGCCGGACTCGTTGCCGAAGCTGAAGTCCACCTCGTAGAGAACCCAGGCCCATTTTCACGGTGACGTATGAAGCACACCTCGCACATCGGTAGTGTAGTAGTTTCGTTTTATTTTTTGTTTTTGAGAGGATAGAACATAGAAGTAATTCTTTCTACATCTTTTGGTCGATAGAGTAGTTCTCCGTTACTTGGAATTGGAGTAAACTTTTGGGCTTGGGTCTGGACTAAAAAGAACCCTGAGCCGGTGGTGTACAGTAACAAAAGTGAGTGCAGTTTGCACATGAAGCTTAAAAAGTTATCGTCTCCCAGATGTTACCCTCCGGGCCAAAATACTCTGTTTTCTAAATGCGGGTCATACTTTTGTGCCAAGTCAAACTTCTCTAATTTTGACAGGGTATATAACAAAATGTATCAACATATGCGGCATCAATTTAGTTTCATTAAATTCACAATAAAATATGTGCTGATATCACATATATTTAGTATTATGGGTGTTAATATATTTTTATTTAAATTTGGTCAAAGTTATAAAAGTGTT | |||||||||
gi|304527747|gb|HO327149.1|HO327149 CFHB5525.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB5525 TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): AAGTCAAACTTCTTTAGCTTTGACCAAGTTTATAGAAAAATACATATATATCTTCAATATCAAACTAGTTTCAGTAGATAGACCCATGAAATATATTTTCATGGTGGCATTATATTTGATATTTTAGGTGTTAATATATTTTCTATAAACTTTGTCAAATTTAGACATGTTTGACTTGGACAAAGCTAATACAACCCCATTATTTGGAGCGGAGGGAGGAAGGATTTTAATGAGGCTATCAGACTTATCATCTTGTTTTGTTGAGCAGGTTGTCTTGTTGAACCAAGTCACTACTAAATTTACAGAAGGATCATTTCAATTGACTCTTGCTCTAGGTGACAGCTGGTCCCACTCGTGCACAAATCGACTGATTCTGTACTGGAATGGGAATGATCGGTATGCATACCTGGACAAATCTCCTTCACTTCCAGTAGCTTCAGCTCCATATGCAGTGACAGGCAAGGGGGTGAGGGATGCTGCGAGTTCAAATCACAAGAGAGTCCGAGTAACGTAGCGAACTTGGTGCCAACTCCTGTACCTCCAGTTCTCTACTATGCACTTGCTGCTAAATTAACTGCGTTCCTTCACCGTGGGTCTTTTGGACAAATTAGGTGATTGGTGGGTATTGGTAGAGAATCTCCTACCATTTTGAAAGTCTCGATTGCTTTTTGATGTAAACCAGAAATTGTAGGGAAGTAGATGCCGCAAAAGAGGGTTTAGTTGACCCATCGTCAAATCTCGTGTGTCTGAAACGCGACTACCAGCTCTTTCAGGTGGCTCGGACCTATTTGTTCGT | |||||||||
gi|197954535|gb|FL697588.1|FL697588 CCGA5376.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA5376 3', m TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): TTTCATGAAAAATAATCTATATACAAAAAACTATATACATATCAAGCAGAAACTTATCATACATCACTGCTTGTATTATCAATCATCAATTTTGTCAGTCATAGTAAGCTAATTTTGTTGGTGCACAAAAAACCTATTGGAAGAAGCATAATCTATATACAAAAAAACTACTGAATCTTATGAAAAATAAAGAGGAATAGCAAGTTCGACAAGATGATCCATTTAACAAACATGTTGGAAACAAAATGTACATAATACAATATTATAAAACAATTTTAACCATTTGTTAATATTCTATTTGCATGTAACCACTACTTTACATGTCATATTAGGGTTGCCCTAAGTCAATCATGATTAACTTTGACCAACTCTACAAAAAATATAGCAATAACTATACTACCTAGCATATGCACTGTTAACATATATGTCATGGTGGATTCAATGAAACAAAATGGTACTGTAAATGTTATTATTTCTTTCTATGAATTTGGTCAAGTTGACCAAGTTTGATTTAAGACAAACTTAATACGACATGTATGCAGTATTGTAGACACAACAAAAAAAGCCCAACTACACAAGCGAGTCACTTGAAACTTCCTGAGTTTTGTTATTTATAATGATACGGAAAATATAATTTGTATGAGTAGAAAAAGAATGTGTTGATGTTCCCATAAATTGACCTC | |||||||||
gi|198052329|gb|FL779773.1|FL779773 CCGF10316.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): GCGACATACTGGAGCACTTTCGCACAGCCATGAGAAGTCTCTTCTGGCCCAAAAACAGCTGCAGCTGAGCATTTCCTTGCAGACATCTTTTACTTCCGAATATGCAGCTATACAGAACAGACTGCTGCTATAAACTACCTGGAAAAATTCCTCGGGGAGCATAAAGATGTGCGTATAGTTATTATTGATAGTGTCACTTTCCACTTTCGACAAGATTTTGATGATATGGCTCTGCGGACCAGAGTGCTTAGTGGATTGTCATTGAAGTTAATGAAGATTGCAAAGACATACAACTTGGTGGTAATTTGCCTATCATGTTTATGAAGGGCGTGCACTTGTGATGCAGCAACTACCGTCATGTTTCTTTTTTCCAAAAAACATATTTTGTACAGATTTTCAGTACTCCCTCCATCCCAAAACATAACTCGTTTTAGCTTTGCCCTAAGTCAAACTTCTTTAGCTTTGACCAAGTTTATAGAAAAATGCATAAATATCTTCGATATCAAATTAGTTTCAGTAGATAGACCATGAAATATATTTTCAAAGTGCACTATATTTGATATTATAGATGTTAATATATTTTTCTATAAACTTAGTCAAATTTAGACATGTTTGACTTGGACAAAGCTAAAACAACCCATAATTTGGAACGGAGGGAGGAAGGATTAAATGAGGCTATCAACCTATCATACTTATCATCTTATTTTATTGAGCAGGTTGTCTTGTTGAACCAAGTCACTACTAAATTTACAGAAGGATCATTTC | |||||||||
gi|197998370|gb|FL739345.1|FL739345 CCGB16365.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB16365 5', TTGACCAAGTTTATGGAAAAG EST sequence (targeted fragment marked with yellow): CTTTTACATATATTGCACATGTATCTGTTCACGCCCAATCAAATTCCCTGCCTGTGAATAGAGGTCATGTAATATATTTTTAAATGTATTGATATTCTAGTAATTCTTGGTTGACTATTTTTTCTCATATGATAGCATTCTCAAATTTGGCAAATGAAAACTGTCTTCTGGCAAAAAAAAAGGGGAATCGTGGCCATGAAAACAAACAGCCTATCTGACCTATGGCCTAATTTGCTGGTAGCTTGTGGGTGAACATCTAGTCAAAAAAACTACTCCCTCTGTCCTGAAATGTAAGGCATTTTGGTTTGTCCTAAGTCAAACTGTTCTAAGTTTGACCAAGTTTATGGAAAAGAGTAATAATATTTTGAATACCAGATGAGAATAATTAGATCCATTATGAAATATATTTTCATAATTTACTTATTTGATGTGTTAGATCCTGATATTCTTCTCTATAAATTTGGTCAAACTTAGACTACTTTGACTTAGGACAAAGCAAAATGACTTGCATTTCAGGATGAAGTACTGACTTATCATGAGCTTTTAAATGAATGGGCATTTATTGTTTAGGTCATGGAGGATCGAGATGTTCACAGTATCAGGATGACAATGGATTGGTCCATGGTACTAAAAAATCGCCAGCACTGTAGAAAAATTTTCCTGTGGTGACAATGAACATTTTGTCTGAAATTATTGAAATTCCATAAATTTCCTTCTATTTGTTATTTTAAACCTGCAAGGATCACTAATGCCTATCACTGCTAAAAACCTTACTAAACATTGTGTGTGCTTGCTGTT | |||||||||