| mature miRNA: TTGACTAAGTTTATAGAAAAA species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|304488976|gb|HO289199.1|HO289199 CFBY783.b1 CFBY Panicum virgatum Dacotah normalized leaf Panicum virgatum cDNA clone CFBY783 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): AGTGCAGTTTGCACATGAAGCTTAAAAAGTTGTCGTCTCCCAGATGTTACCCTCCGGGCCAAAATACTCTGTTTTCTAAATGCGGGTCATACTTTTGTGCCAAGTCAAACTTCTCTAATTTTGACAGGGTATATAACAAAATGTATCAACATATGCGGCATCAATTTAGTTTCATTAAATTCACAATAAAATATGTGCTGATATCACATATATTTAGTATTATGGGTGTTAATATATTTTTATTTAAATTTGGTCAAAGTTATAAAAGTGTTAGGACTATATTTTGGACCGGAGCGAGTACTTGATTTGGATATGCAATTGCTTTGATGCGACCGTTGACCACTATGTCTTCTAAAAATACATGGTTTATAAATTTATGCCATTATTGAAGTACTTTTCAAATATGCTCATATGATTTCATGTTCCTAAGCTAAACATCTTAAAAGTTATTGATAGTCGAAGTTTACACAAGTTTAACTAGCTCTTGTGCAAAACAGCAATTAAGTATTTGTGAGCTGAGTATTACTACTGCTTGGTTTCTATTCGTTTGCTAGCTATGAAATTTCTCTATTTCAAATGGGCACGAGTTAACAAAATGCCATAAAAATAACTCGCTAGGGGTTGAGATGTACATTTAGCTTTTAGCTGTTGAAGTTGGTAAGAAACTAAGAATCCAACCCAATATTCCTTGTGCCCTAGCTAGCGTTTACTCGGGGACATGTTCAGTTAATTCATTACTACCGGGCCACTAACCGTTTGCTTGTGCATCACTATCACTGGCCTTATTCTTTGTTGG | |||||||||
gi|304530521|gb|HO328169.1|HO328169 CFHB6085.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB6085 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): AAAAAGTATCAATACTGTCTTCCATATCGTATTTAAGCTCTGATGTGTTATACGAGCAGCTTACAAATGTGGGGTTATTGCAGAAGCAAGCTTATTAGTTACTTTCAAAAGAAAACAAGTTGTGTCTCTTGTATACTAAGAGCATGCAAGCTCGTCTAGTCATTTTCAAAAGAAAAAAAAATGTGAGCAGCTTAGAAATGTGGGTATTGCAGAAACAAGCTTATTTGTTACTTTCAAAAGAAAACAAGTTGTGTCTTTTGTATACTAAAAACATGCAAACTCGTTTAGTCATTTTCGAAAGAAAAAAAAATGTGACTTCCCTTCCTACCATTTTAACCGATCTGACTGAATAAATACAATATCAAAACATATTTGATGATGGATCCAATGAAACAATTAATTTGATGTTGTAGGTATTGAACGTTTTCTATAAACTTAGTCAAAATTAGGAAAGTTTGACTAGGATGAAGTGAAAACGAAGTATGATGTAGAATGGAGTACAACCTACGGATATACAGATATTGCTTGTTTGTATACTGTTATTAATTGTTGCTACATGAATAAGCATTGGCTGAAGGGCAAGGC | |||||||||
gi|197972258|gb|FL714974.1|FL714974 CCGB2494.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB2494 5', m TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): ATGAAGGTGGCGGCCAGGGTTGCCGACATCTACCGCGTCCTCTACGGGGCCGCGCCCAACACGAAATCCGTCATGCTAGAGCTGTGGCGTGATCAGCATATCGAGTACCTGACACATGGGCTGAGGCATCTCGGGCCAGCCTTTCATGTTCTCGATGCCAATCGTCCATGGCTGTGCTACTGGATGGTTCATCCACTTGCTTTGTTGGATGAAGTACTTGATGATGATCTGGAGGATGATATCGTGGACTTCTTAGCTCGATGTCAGGATAAAGATGGTGGATATGGCGGTGGACCTGGGCAGGGCGTAGTTGTGGTGGACGGGAGGCCGGGGACTTGGCTCCCGGCGGCGGCGAGGACGCGACGCCATCCTGACGGCCGGCGTCGAGCAAGAGCAGGGGAGTGCGGTTACAGGGAAGGAGCGGGAGCCCTGAGATCCAAATGATCTCCAAGCTTAACCTCTATTCATTCTCCCAGTACATTAGTTATAGGTTACAGATTCAAACACAACACAAGCGCTAACTGGCACGACGTGCGTGGGCGCTTACAAATTCAAACACAACACAAATGCTAACTGACAAGTCGAGGACGCGTTCCTGGCTTCTCTTCTCAGCCACGATGGTGTCGTTCATACACGCTGCCGACCATAACATCATACTTATTTGGCATAAAAAATATTGGCAGCTTTTTGTGTAAACTTGGTCAAACTTAAAATAGTTTAACTTTGGACAAAACTAGAATGGCATTCTTTTGGGGCAGAGGGAGTACATTTTTAGGATGCTTTCATTAACCTTTTTACTACTGGGGTTT | |||||||||
gi|198003251|gb|FL746497.1|FL746497 CCGC2061.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): AATATATTTCTATACTACATCAATTTGAAGACACAAAAGTTTGTAACTTTTTAATAAATTTAGTCAAAATTAAAAGTATCTGACTTCTCGGAAAGCGAGATTTATATTCTTTT | |||||||||
gi|304512932|gb|HO312927.1|HO312927 CFHA2869.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2869 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CGTACGTTTCTCTATAGCAATTGGGAGCAAACGAAAGGGAGATGTTGATTGGATTCGCTCTCTCTCTTGAGAGGGAGATACGTGGATTCGTAAGATCTCAAATTTAAGCTCTTCAAACGTGGTGTAGCTTGCCGGACTCGTTGCCGAAGCTGAAGTCCACCTCGTAGAGAACCCAGGCCCATTTTCACGGTGACGTATGAAGCACACCTCGCACATCGGTAGTGTAGTAGTTTCGTTTTATTTTTTGTTTTTGAGAGGATAGAACATAGAAGTAATTCTTTCTACATCTTTTGGTCGATAGAGTAGTTCTCCGTTACTTGGAATTGGAGTAAACTTTTGGGCTTGGGTCTGGACTAAAAAGAACCCTGAGCCGGTGGTGTACAGTAACAAAAGTGAGTGCAGTTTGCACATGAAGCTTAAAAAGTTATCGTCTCCCAGATGTTACCCTCCGGGCCAAAATACTCTGTTTTCTAAATGCGGGTCATACTTTTGTGCCAAGTCAAACTTCTCTAATTTTGACAGGGTATATAACAAAATGTATCAACATATGCGGCATCAATTTAGTTTCATTAAATTCACAATAAAATATGTGCTGATATCACATATATTTAGTATTATGGGTGTTAATATATTTTTATTTAAATTTGGTCAAAGTTATAAAAGTGTT | |||||||||
gi|304473015|gb|HO270944.1|HO270944 CCTZ1303.g1 CCTZ Panicum virgatum Pathfinder normalized leaf Panicum virgatum cDNA clone CCT TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): AAAGTGAGTCTAAATCTTCTTCAAAACCCAATAACTGATAATTTGGGTTTTTTAGGAGTCTAATGTTTGCCAAATCGTTATGGAAAATGTGCACTTTGTTTCACTGTTTTCACTTTTACCACATGAGTTCTCTGGGCCTCATGTAAATGTGCTGCCTTTCTTCTATACTATTTTTATTTACTTTATTTTTGACCGAACACATCTATAGCAGATATCTATTTCACGGTGAAAAGGCGCAAGGAGCTACTTCCTCCGTTCCAAATTATAAGTAATTCCAAGAATTTTGGAGAGTCAAACCATCTCAAAGTTTGACTAAAATTATAAATAGAAACGCAAAAATTTATGACATCAAATAGGTATACTATGAAAATATAGCTAACAAAGAATCTAATAATACTTAATTGGTATCATAAATGTTATTATTTTGTTATATAAATTTAGTCAAATTAAAAAAACTGACTCTCCAAGACTCTTTGTGACTTATAATTTGGAACGAAGGGAGTATTGGCGTGGTTTTGGTGCCCACGGGTCACAGGAGAAACTTGTTATGGGGTGGTCAAAGGCGTGAAGAGCTGTCTGCACCAATTTGAATGGCAGCAATTTTGTTGTTCAAGACTCAAAAGAGTCTGGAGCAAAATTGAACATACAGGAGACGCGTTTGTACATTTTGATTTATGAACCTGAGCGCAGATTGAGCTAACAAAATTGAAAAGAAATGGTCCATTTCGTTCCGCCTTTTCC | |||||||||
gi|304527448|gb|HO321666.1|HO321666 CFHB2502.b1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB2502 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GATGTTCCACCAGCAATGGCTGTGCAGTGAACCGCGGAGGTGAACTTCTGGCAAATCTGACTGCAGGCACACCGTGGGAGGCTGTTGCTAAGGAGGTTGGTACCACTTTGGGTACTGACTCGGGCATTCTACGGGCACAGATCTCAAAGGATGTTGAGACACTTGCTGATGTAATTGCTTCATGGATATCTTCAAATTCTGGTCCTAGACTACTTCGTCCATGATCACTTATTTTGCGTACAGAAATGTCAATAGCACGGAAGAGCATCAAGTTTTTATTGATAAACTGTGAGTAATAAAAAAAAATTAGATTGGACTTCAGTGCGATATGTTAGTAGTACTTTAGATCCATGTTGTGGTTCAAAAAAAAATGAAGATGTTGTGTATTTAGATGGAGTATTTTTTTTTAAACTTAGTTATTTTTGTAGAATGAAACTTTATAAGAAATAGAATAAGGTGATAGCTTCTAGCTATGGTAAAACTGCTCACTTGTACACAAAGGGGTACTGCAATTCAACAAGGATCTGATTGGAACTT | |||||||||
gi|304526477|gb|HO324151.1|HO324151 CFHB3939.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB3939 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): ATTAACCTAATGATACTTATTTAACAATATAAATGTTAATAGTATTTTGTATAAATTTAGTCAAATTTGAAACTTACTCCTCCAGAAACGAGAGTTGCATTCTTTTTTGGATGGAGTGAGTACTTTTTCTACTTATTCGGTACAGCTGGCCATGTCAATGGATGGTCCAGTCGTTTCTTTGTTTCTTGTTAGCGTTTGGTTAAAGAGTGAGGTAGGATGGTTTCATTAGAATGATTCTAT | |||||||||
gi|198052329|gb|FL779773.1|FL779773 CCGF10316.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GCGACATACTGGAGCACTTTCGCACAGCCATGAGAAGTCTCTTCTGGCCCAAAAACAGCTGCAGCTGAGCATTTCCTTGCAGACATCTTTTACTTCCGAATATGCAGCTATACAGAACAGACTGCTGCTATAAACTACCTGGAAAAATTCCTCGGGGAGCATAAAGATGTGCGTATAGTTATTATTGATAGTGTCACTTTCCACTTTCGACAAGATTTTGATGATATGGCTCTGCGGACCAGAGTGCTTAGTGGATTGTCATTGAAGTTAATGAAGATTGCAAAGACATACAACTTGGTGGTAATTTGCCTATCATGTTTATGAAGGGCGTGCACTTGTGATGCAGCAACTACCGTCATGTTTCTTTTTTCCAAAAAACATATTTTGTACAGATTTTCAGTACTCCCTCCATCCCAAAACATAACTCGTTTTAGCTTTGCCCTAAGTCAAACTTCTTTAGCTTTGACCAAGTTTATAGAAAAATGCATAAATATCTTCGATATCAAATTAGTTTCAGTAGATAGACCATGAAATATATTTTCAAAGTGCACTATATTTGATATTATAGATGTTAATATATTTTTCTATAAACTTAGTCAAATTTAGACATGTTTGACTTGGACAAAGCTAAAACAACCCATAATTTGGAACGGAGGGAGGAAGGATTAAATGAGGCTATCAACCTATCATACTTATCATCTTATTTTATTGAGCAGGTTGTCTTGTTGAACCAAGTCACTACTAAATTTACAGAAGGATCATTTC | |||||||||
gi|304524573|gb|HO320791.1|HO320791 CFHB1988.b1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB1988 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GGGTCCAGGAGGAGTGGACTGTCCCCTCCAAGCATCAGATCTTTCTCCCATGGCCTCTTGGTCCATCAGCTCTGATGTTACGCAGGACACTAGCCAACCTTTACTCTGTAAGGGCATTTTCTGAATGTAATTGTCTGTCTGATTCTTGTGAATCTCATGTGTTTCAAGCAGACCCTAGATCGGTACAAGAGCAATGCCAGATCACATCAAGGTGAGACATTCTTTGAAGAATGCTTGCTCCTCCAAGTTTCCAGTAGTCGCCGTTTCAACTTTCATGTGCAACAGCCCAAGATTCCACGGAAAACCAAACTGCACTCCATGTTAATTCTTTTCAAATTGTAAGTCATTCCAACTTTCTTGAGAAGTCAAACTATTTTATGTTTGACCAAAATTATAAAAAAAATTACAAAGATTTATAGCACCAAATAGATATACTATTAAAATATGTTTAATGAAGAATCGAATGATACTAATTTGGTATCATAAATGTTTGTACTTTATTGTATAAATTTGGTCAAATTTGAAACGGTAATGCTACAGTATGGACATCCGGAATTTTAAAAAAAAATCAGACACTCTGATGTTGTTTC | |||||||||
gi|198307724|gb|FL976901.1|FL976901 CCHY13602.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY13602 3', mRNA TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GTGGTAAATTTCTGCTTTGTTCTTTAAACTTGGTCAAAAATAGAGATGTTTGACTTAGGACAGAGCTAAAGTGAACTATAAATTAGAATGAAGGGCGTTTGTCTTTAACATGATATTGTATGCTTTCCTGACAGAGAACAGGAAAAAAAAAGAAACAGTTGCCATAGCTTTGCTAAAGGGCAAAAGCTCCCACTCTCTTTCGTAATTACTGAAGGTACATATGAAAGTGCAGTATTGGGGACTTTGTTGTGTGCTTTCCTGACAGATCTGATTTTTTTTTAAATAGTTGCAATCTGTATCTTTAAATTTGTTTCCTTCTGTCTGTATTATCTGGTCTTTTCTTATTCAAAACTTATCATTCTGGAGGTTGTCTAACGCATCTGCAATAACATGATGCAGCATTTGCACCCAGGTTATCTTCCCACTGGTGGGTCGTTGCATCACTTCTATACTGGCCCCTATTGTAGAGATGAAATATTTCTCACCCAGGTGTTGAAGTTCATGCGGCAACAACTTGGATCACCATTTTCCAAATGATCCTCAGCATCAAGAACCCTGGATGGCAGTCTTTGGTTATCACCTAATGGATGTAAATATGTGTATAACGCAGCAGAGGGGTGTATTTGTGGTCAAAGCCGTAATGATGGTGGGCCCTTAGTTGCATTGCATCCCTTTTGTTGCTTTGTATAATCATGCGCAGATCAAATAAAGGTTTTGCGTTTTTGTTGAGAAATATTGTGCCGGACTGAGGTCTTCAATATTT | |||||||||
gi|304479798|gb|HO271775.1|HO271775 CCTZ1752.g1 CCTZ Panicum virgatum Pathfinder normalized leaf Panicum virgatum cDNA clone CCT TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CATATACCACATTAAAGAAGTAGCTATGAGTATATATCATGATTGGTCTATTGATGCTCATTTGAAATCGTAAATATTATTGTGCTTTTCTGTAAACTTGGTCGAACTTATAAAACTTGACTTGAGATGAACTCAGAATCTGACGGAGGGACTATGTATTTTAGCTTATCAGTGCAGTGTCCCGTACTCTGTGTCTGGAGCCTTTACATTACCTGAACTGTCCAATGCTTTTCTTGCTCTTTTTTTTTTTTGTATACTTTGCATCATGAGTTCATCATCCTAACCAACTGAACATTGTCCAGAGTGGACTATTCTGAAAGAAGGATTTTGAGAAGACTGAAGGCGGGACGGGGACTAAATAATGTATTGTCCAAGATCCATCAATACTCTCCTGTAAATGCATCGTTCTAGTTAGATGTTGATCTGTAAAATGAACTAGAGTCACCCTCCAAGGAGGCTAACATTATCCAGTCACCTAGTGCCATTGAAAACAGCCTACTATGTATTCATTATGACTTGATGCGTATTGTGCTGCTCAGGTAACCTAAACTATCTGTGTCAGGTTCCGCTAGGCCATTGCAAGTAGTCAAAGTACTCTCCTTGATGGGACATACATGCCCTTCTGCTGTCCGAATCTATGAGAAACTCGAGGCGGGCTTGCGTTTGACTGTATTTCGCATGATCCAAGTAAAATGGAGGCGAAGCTGGCCGTACGAACT | |||||||||
gi|59873176|gb|DN152325.1|DN152325 5231_B04_D07 Switchgrass callus cDNA library Panicum virgatum cDNA clone 5231_B04_D07 5', mRN TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTTGGCCGCCGCCAGGCACCTGATGCAAGCAGGCCACCGGCCCCCTCCCATCTTCGGCGGCAGTGTCTCTCCGAGCTCCGGCCCTCCGCCCCCCTCTCCGGCAAGCCCCTGCCAAAGCCATCATCTGTCTCCACACGGGCCGCGCGGTCGACAGGCACCCCTGTTCTGCGCATCCAAGGTAGCAGGGTCGCAGGGGGGCCGGTCAAGCTGCGAGGCAGCCGGCGGCTCCACCTCCGTTGTCCGCTCTGTGGCAGGTTGCAGCCCGCAAGGTAGCTGGCAATACCTATGTCAGTCGTCAGAACTAGCAACAGGGCGCCAGATGCAAGCAACAATGATGACATGAAGCTGAAACTGTGAAGCAAGTGCACAACAAGGCATATAAAATTCAAAGAAAAGAACAATATTAGTGGCTGATTCACCAGATATGTTTGTAACTTGTTACTTGTGATGTACTCCATATGTTTCAAATTATAAGTTATTTCAAAAATCTTGTAGAGTCAAATCATTTTAAAATTTGACCAAAATTATAGAGAGAAACACAAAAATTTATGACATCAAATATATATACTATAAAAATATAGTTAACAAAGAATTTAATGATACTTATTAGTATCATAAATGTTATTATCTTGTTATATAAATTTGGTCAAACTTGAAAAAATTTGACTCTCCATGATTTTTGAAATGACTTATAATTTTGAACGGAGGGAGTATATTGTATGGTGA | |||||||||
gi|198329284|gb|FL995724.1|FL995724 CCHY23822.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY23822 5', mRNA TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GGGCGTAACATCCTTCTCCCAACTCTCAGCCTAGAACTCGCCTTCGCTTCGCTCTTCTCCTCGAGTTCTTTCGAGCCGCTGGTCGTCCCGCGCTCGGCGCTGGAACTGGAAGGTGTTTGAATAACAGCTCGAAGGTTCAAAGGAACCTACGTTTGTTGTAAGATGTATAGGGCTAAGAGAGCTGCACTGTCACCAAAGGTGAAGCGCCGTGTTGGGAAGTATGAGCTCGGACGCACTATTGGGGAAGGAACCTTCGCAAAGGTCCGGTTCACGAAGAACACTGAAAACGGGGATCCTGTTGCTATCAAAATTCTTGACAAGGAGAAGGTTCAGAGGCACAGATTGGTTGAGCAGATTAAGCGTGAAATTTGTACTATGAAGTTAGTCAAGCATCCTAATGTTGTTCGACTGTTTGAGGTGATGGGAAGTAAAGCAAGAATTTTCATTGTTCTGGAATATGTTACTGGTGGAGAGCTTTTTGAAATCATTGCCACTAATGGAAGGTTGAAGGAGGACGAAGCACGGAAATATTTTCAGCAACTAATCAATGCAGTTGATTATTGCCACAGTAGGGGAGTGTACCACAGAGATTTGAAGTTAGAGAATTTGCTGCTTGATGCTGCTGGAAATCTCAAAGTATCTGACTTCGGTTTAAGTGCTTTAACTGAGCAATTTGAAAGCTGATGGTCTGCTTCATACTACATGTGGAACTCCCAACTATGTTGCTCCTGAGTGA | |||||||||
gi|169704169|gb|FE631676.1|FE631676 CBYY10342.b1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY10342 5', mR TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CAGGATTTGCGCCTGGTCCGACGGCGCGGCGCTGCTCGAGCGGTTCGGTTTTTAGGCCAGCGGTTTCTTTGTGTTCTTGGGTTGTTTGGGGGTGGTAATGGCATGGGATCTGGGGATTTGTTTGCTGTGGTCGTCGTTGAGATGAGGATGTGGGTGGAAAAAAAATTGAATCTGCGGAAAGGAAGTGTAGTGTAGTGGGTTAGAAAAGGTAAAGCTGTAATTATTGGTGCCCATCTGGAGCTGTTGGCGTCTTGCAATGGTGGGGAAGACACCGGCTTTTTGCTCGCCTCTGGAGAGTTGGCGAGCTCCTTTACCCCTTTTTCTGTGGCAAGTAATTATGGTTAGTCTTAATTTTTTATATTTTGGTTTCTCCCTGTAGTTGTTGAGCAAGTCTTGATTGCTTCTATTTTTAGGATGGACTCTTCCTGGTTTTGTGTACTAGCTATCAGAGATGTTTTTTTTTTTCAATTTAGTCAGTATACTTTGATTAGGAACCACTACACAGTTGCGATTTTTTCTGAAGTCAGATGGCTGTAGTGTTTAGGAGGGGTTTTGGATTGAGTGAAATGCAGTTTTTTTAACCTACCTGGTTGGTTCATTCCATTTCTCATACTTGCCGCTGGTGTTTTTCCAAGATTGGTGATGTAGAGTGCTCTTCCGAACTCCAATGGTTTCCTCCCACAGTGCAAGATGTGGAAATGTTCACAAATGCTCTTAT | |||||||||
gi|197998370|gb|FL739345.1|FL739345 CCGB16365.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB16365 5', TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CTTTTACATATATTGCACATGTATCTGTTCACGCCCAATCAAATTCCCTGCCTGTGAATAGAGGTCATGTAATATATTTTTAAATGTATTGATATTCTAGTAATTCTTGGTTGACTATTTTTTCTCATATGATAGCATTCTCAAATTTGGCAAATGAAAACTGTCTTCTGGCAAAAAAAAAGGGGAATCGTGGCCATGAAAACAAACAGCCTATCTGACCTATGGCCTAATTTGCTGGTAGCTTGTGGGTGAACATCTAGTCAAAAAAACTACTCCCTCTGTCCTGAAATGTAAGGCATTTTGGTTTGTCCTAAGTCAAACTGTTCTAAGTTTGACCAAGTTTATGGAAAAGAGTAATAATATTTTGAATACCAGATGAGAATAATTAGATCCATTATGAAATATATTTTCATAATTTACTTATTTGATGTGTTAGATCCTGATATTCTTCTCTATAAATTTGGTCAAACTTAGACTACTTTGACTTAGGACAAAGCAAAATGACTTGCATTTCAGGATGAAGTACTGACTTATCATGAGCTTTTAAATGAATGGGCATTTATTGTTTAGGTCATGGAGGATCGAGATGTTCACAGTATCAGGATGACAATGGATTGGTCCATGGTACTAAAAAATCGCCAGCACTGTAGAAAAATTTTCCTGTGGTGACAATGAACATTTTGTCTGAAATTATTGAAATTCCATAAATTTCCTTCTATTTGTTATTTTAAACCTGCAAGGATCACTAATGCCTATCACTGCTAAAAACCTTACTAAACATTGTGTGTGCTTGCTGTT | |||||||||
gi|197948344|gb|FL694933.1|FL694933 CCGA4049.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA4049 3', m TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): AGACATGATTTATTATCCTTTTGCGTCAAGCAGGGATGCATGAGCAGTGAAACTCATGTTGATTCTGTCTCTACCAGTTGCTTTTTGTGTACCCTTTGTCTGGCAAGAAGGGTCCGATGCTTAGGATTTGGAGTCTGCATAGACCTCATCTCGCAAACTGTGTAGTATGGTCAGTTAGTATTCTAAGCTACCAGCTAGGTTGTTTGGTAGCTATGGATACTTGTTGTTGCATGTTGATTTATAGATGCCTCAGATGTGCTGTAATATTGCTGCTCCAAATGCCGGATAGACACCTACTCCCTCCATCCTGAAATGTAAGTCATTTTGCTTTGTCCTAAGTCAAAGTAGTCTAAGTTTGACCAAATTTATAGAGAAGAATACTAACATCTAAGACATCAAATAAGTAAATTAAGAAAGTATATTTCATTGTTGATCTAATTATTCTTATTTGACATTCAAAATATTATTATTTTTTCTATAAACTTGGTCAAACATGGAACAATTTGATTTAAGACAAACCAAAATGACTTACATTTCAGGATAGAGGGAGTATATATATATCCTGATGGCAGGATAAATTTGTGCTTGGATTGAAACATGGTGATTGGATGTGTTGTGATGTTCACGATTGAGATGCCAGACAAACACCATAGGAGAGTCTGGTGATGCGGATGTCTTGTAATATTCACTATTCAATTGCCGGTCAGACACCTAATGGCTAGGATAGTTTGGTGCTCGGATGTGTTGTAATATTTATAATTCAAATGCCGGATAGACACCTATATTAATCTGTTGATGGTGTGCTTGCTTCT | |||||||||
gi|304527747|gb|HO327149.1|HO327149 CFHB5525.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB5525 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): AAGTCAAACTTCTTTAGCTTTGACCAAGTTTATAGAAAAATACATATATATCTTCAATATCAAACTAGTTTCAGTAGATAGACCCATGAAATATATTTTCATGGTGGCATTATATTTGATATTTTAGGTGTTAATATATTTTCTATAAACTTTGTCAAATTTAGACATGTTTGACTTGGACAAAGCTAATACAACCCCATTATTTGGAGCGGAGGGAGGAAGGATTTTAATGAGGCTATCAGACTTATCATCTTGTTTTGTTGAGCAGGTTGTCTTGTTGAACCAAGTCACTACTAAATTTACAGAAGGATCATTTCAATTGACTCTTGCTCTAGGTGACAGCTGGTCCCACTCGTGCACAAATCGACTGATTCTGTACTGGAATGGGAATGATCGGTATGCATACCTGGACAAATCTCCTTCACTTCCAGTAGCTTCAGCTCCATATGCAGTGACAGGCAAGGGGGTGAGGGATGCTGCGAGTTCAAATCACAAGAGAGTCCGAGTAACGTAGCGAACTTGGTGCCAACTCCTGTACCTCCAGTTCTCTACTATGCACTTGCTGCTAAATTAACTGCGTTCCTTCACCGTGGGTCTTTTGGACAAATTAGGTGATTGGTGGGTATTGGTAGAGAATCTCCTACCATTTTGAAAGTCTCGATTGCTTTTTGATGTAAACCAGAAATTGTAGGGAAGTAGATGCCGCAAAAGAGGGTTTAGTTGACCCATCGTCAAATCTCGTGTGTCTGAAACGCGACTACCAGCTCTTTCAGGTGGCTCGGACCTATTTGTTCGT | |||||||||
gi|198307723|gb|FL976900.1|FL976900 CCHY13602.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY13602 5', mRNA TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GTTGTAAATTTTCTGCTTTGTTCTTTAAACTTGGTCAAAAATAGAGATGTTTGACTTAGGACAGAGCTAAAGTGAACTATAAATTAGAATGAAGGGCGTTTGTCTTTAACATGATATTGTATGCTTTCCTGACAGAGAACAGGAAAAAAAAGAAACAGTTGCCATAGCTTTGCTAAAGGGCAAAAGCTCCCACTCTCTTTCGTAATTACTGAAGGTACATATGAAAGTGCAGTATTGGGGACTTTGTTGTGTGCTTTCCTGACAGATCTGATTTTTTTTTAAATAGTTGCAATCTGTATCTTTAAATTTGTTTCCTTCTGTCTGTATTATCTGGTCTTTTCTTATTCAAAACTTATCATTCTGGAGGTTGTCTAACGCATCTGCAATAACATGATGCAGCATTTGCACCCAGGTTATCTTCCCACTGGTGGGTCGTTGCATCACTTCTATACTGGCCCCTATTGTAGAGATGAAATATTTCTCACCCAGGTGTTGAAGTTCATGCGGCAACAACTTGGATCACCATTTTCCAAATGATCCTCAGCATCAAGAACCCTGGATGGCAGTCTTTGGTTATCACCTAATGGATGTAAATATGTGTATAACGCAGCAGAGGGGTGTATTTGTGGTCAAAGCCGTAATGATGGTGGGCCCTTAGTTGCATTGCATCCCTTTTGTTGCTTTGTATAATCATGCGCAGATCAAATAAAGGTTTTGCGTTTTTGTTGAG | |||||||||
gi|198341453|gb|GD009714.1|GD009714 CCHZ3184.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): ACCTGTGCTCACCGATTTTGAAGCACGGAACACGGAGGTCAGACCTGATCTATCACTCCTAGTTTTTCTCAGAACTTAGTCTATTGGAAGAGATCCACAATTGCACTGCTGCTACCTCTCATAGGATCTGAGACCTGCTGCTGCTTTCAGGCCA | |||||||||
gi|169695018|gb|FE620681.1|FE620681 CBYY3002.g1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY3002 3', mRNA TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): TCTTATCTGATTTTTTTAGGATCCGGTAGTAGATCTCAGCCTGGCAGCATTTTCAGATTGATGTTTGCTTTATACGTGGCAAGCCCATAGATGTAACAGATGCATCTTCATCACAGAACTAGCAACTGGGCGCCAGATGCAAGCAACAATGATGACATGAAGCTGAAACTGTGAAGCAAGTGCACAAGGCATAAAAAATTCAAAGAAACGAACAATATTAGTGGCTGATTCACCAGACATGTTTGTAACTTGTTACTTGTGATGTACTCACTCCGTTCCAAATTATAAGTCATTTCAAAAATTTTGGAAAGTCAAACCATTTCAAAATTTGACCAAAATTATAGAGAGAAATATAAATATTTATGACATCAATAGATATACTATAAAAATATAGCTAATAAAGAATTTAATAATACTTAATTAGTATCATAAATATTATTATCTTGTTATATAAATTTGGTCAAATTTGAAAAATTTTGACTCTCCAAGATTCTTGGAATGACTTATAATTTGAAACGGAGGGAGTATATTGTATCGTGATGATCTGTAATTTTTAGTATGTCTGAAATCTCAATGAAATAAGGTATGGATTAGTTTC | |||||||||
gi|197954535|gb|FL697588.1|FL697588 CCGA5376.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA5376 3', m TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): TTTCATGAAAAATAATCTATATACAAAAAACTATATACATATCAAGCAGAAACTTATCATACATCACTGCTTGTATTATCAATCATCAATTTTGTCAGTCATAGTAAGCTAATTTTGTTGGTGCACAAAAAACCTATTGGAAGAAGCATAATCTATATACAAAAAAACTACTGAATCTTATGAAAAATAAAGAGGAATAGCAAGTTCGACAAGATGATCCATTTAACAAACATGTTGGAAACAAAATGTACATAATACAATATTATAAAACAATTTTAACCATTTGTTAATATTCTATTTGCATGTAACCACTACTTTACATGTCATATTAGGGTTGCCCTAAGTCAATCATGATTAACTTTGACCAACTCTACAAAAAATATAGCAATAACTATACTACCTAGCATATGCACTGTTAACATATATGTCATGGTGGATTCAATGAAACAAAATGGTACTGTAAATGTTATTATTTCTTTCTATGAATTTGGTCAAGTTGACCAAGTTTGATTTAAGACAAACTTAATACGACATGTATGCAGTATTGTAGACACAACAAAAAAAGCCCAACTACACAAGCGAGTCACTTGAAACTTCCTGAGTTTTGTTATTTATAATGATACGGAAAATATAATTTGTATGAGTAGAAAAAGAATGTGTTGATGTTCCCATAAATTGACCTC | |||||||||
gi|169725223|gb|FE655567.1|FE655567 CBYZ12046.b1 CBYZ Panicum virgatum Kanlow 4 day old seedlings Panicum virgatum cDNA clone CB TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): GACCAAGTTTATAGGATCTAAAATTAGATGAACTAACAACAGCAATGCTATTCTACATCTAAGGTGTAGTGGTTATTCTACACCCAACGTTCAAATTATTGACCAAATGACCAGAAGTTACTGAATTAAATTGCCGTAAGACTATCAGTAATTGGGCGCAGTAGTTATTACTGAATTTGTTCAGTAATTCGTTAGGTGTAGCGACACCTAGGGTGTGGAATAGCACATGGAACAATAGATAATTCATGGTGGATTTAATGAAACTGATCTGGTGCAGTAGATGTTAGTGCTTTTTCTATAAACTTGGTCAAAATTTGAGAAGTTCGACTTAACAAAACTAAAATGATCTTACATTTTGGAAAGGAGTACCACTGAATTCTGTGTTTATATGCCTCACACTAATGTGCTTGCTAACCTTAGATTTCTCATCCATGTTACAAATTCATTGTTTTTGGTTTGCTCAGTAAAATAACAGTATATCTCTTTTTATGATACCTAAATCCATGCCATGACTGGTGACTGCTTTCTGCACGTACGAGCATTCATGTTTATCATATCCCTGACTTTGGTTCATAAGAATAGATTGTGCTCCTGGGATAAATATATGCTTGCCTCTTTTCTGTTCCCTTTATCTTCCAGGTGGAGGATTTGCAGCGACAACTCGAGTCTGCAACCAAGGAACAAGAAGCATTGATTGACATCTTCTCAGAAGAAAGAAATCGTCGGGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGGTG | |||||||||
gi|304525290|gb|HO326377.1|HO326377 CFHB5140.b1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB5140 TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CACATTCCTGGTGATTATGGTGCAGTCGACATAACATTATCACGTCTCCATTCTGCAGTTGAGGCAACTCTAGAGGTCCTCGTATCAGAAGTGCAAATCAGTTTCGATTTGTCGCTCAGTTGTTTAACAAGTGGGCTGAATAAGGGAATCTGGCTGTTTAATGGCACCATTGCTGAGTCACGCAGCTTGAAGAGGTCTGTGGTTGCTGTATTAAGGGAATCTTCGATAGATCTGAAGATCAAAATTGATGCACTGTCATCCAGTTCTGAACAACATTGCTGTTCCTTCCATGCAAAAACCCATGGCCATGATACTCAAGAAATAATGAGTGCTTTTGCTTTCATCTCGGTGAAGGTGACTTGGTCGACATTGCCTGATGGACTATGCCGATAACTCTTCTGTTCCTGTAACGAGTGGGTCGAAGAGACCAACAGTACGGTTTAAATTTAGGTGTGACAAACCTTGGATAAATTTAGGTGTGGCAAACCTTGGATAATGAACAATATATTGAAATAAGTTACTCTTTTACTCCCTTTGTCCTAAAAAAAGTGCAATTCTCATTTCTCGAGAAGTCAAATGATTTCAAGTTTGATCAAACTTATTAAAAAATTACTAACATCTATATCTTCAAATAGTTTTGTATAAATATATATTACATGATTAACCTAATGATACTTATTTAACAATATAAATGTTATAGTATTTTGTATAAATTTAGTCAAATTTGAAACTTACTCTCCAGAACGAGAGTTGCATTCTTTTTTGGATG | |||||||||
gi|198356473|gb|GD023918.1|GD023918 CCHZ11398.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CTAAACTGAATCGATGTTTTAGATGTTGGTGCATTTTTCTATAACTCAGTCAAAGTTAGAGAAGTTTACTTAGGACAAAACTAAAATGACCTACAATTTGAAATGGAGGGAGTAATAAACCCCTTTTTGAGTCTTGCCGTGATTTTGGTTCTGTCCAAACTGAAAATTTACTGAAGTTGCTAATATTGGCAATTGGTTAGTTACTTGAAGTGACCTGACTGCCTGAGGCCCTGAAGTTCCACTTGGAACTGAATTTAACCTATTTTCTTTCACCGCCGTTTGTAGTTCTTATGTTTATCTGACAGGTTACTGTTCGTTTTATTTTCAGTGACATCGATTTTGGTTATTTTTGTGAATATGTTCAAAAAATCACGTGATGAAAATGCTCGAAATGCTGAGGCTGAGAAAAAGAACTGGAAAAGGAAAAGGAAAAGGAAAAGGCAACTGTGTCTGCTAAATAAGGCTAGGAATGAGACTGCTGCTATGTCAAAGTTCCATCTTTGTGAAGTTGGACTGTTACGTGGACCTGCTGCTTAACTTGCAGCACTGCAGGACCTGCTTCAAAATATTCAGTATGTGAGAGGTGTGGTGTCAGGAATCTCGCTATCTGGTTGCCATACATTAAATGGTAGGCTCTTAACTACAGTGCTTACGTATCTATACTTACGTTTAGCAATCGCTGTTTGCATGAATCG | |||||||||
gi|197955297|gb|FL696101.1|FL696101 CCGA4632.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA4632 3', m TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): CTGTTACTCAGTAGTGGTACTACATGTGGCTGCTTTCTGGTAAAGGAACATAGCTAAATTTTGATGTTTTATGCATGCTTTATGGATTGATGCTATAAGTGTGATACCATTTTTTTTTTTTGAATTTGGTCAGGTCATGGAAATTCTCAGCCACATTAACAAAAGGGTGAAGCACAGACCTGAGATTCCACTGCCAATGCTGGATTTATGGAAGATTTATACAGAATCCGCTTCCTCAACAATTGTCCGAAACTTCTGTGTTGTATATATTGAGATGGCGTTTGAACGCCTGCCAACAGAGGAGAAAGGAAACATTGCGCCTGATTTCTTGACCAATATATCAAATGTTCCAGCTCAGAATCAAGGGATCATCTTGAGACTTGCGACAAAGGTTTGTCATGTCTCTACTGGAGTGATCACATTTTAACAAGCTGTGAAGTATTTTATCTCCCTTTTTGCCCTGGTGTGCGTACATTCTATAGCACTTGAGCATTTTTCCCTTCTGAATTTTCTTCTATTGTTGGCCAGGCTATCGGTGAATGTAACATACATAAGGTGGATGACGCTATTGCTTCAAAATATCAAGCAATAACTGAATCCAGTGACGGTCTAGTATTTGCTGACTTCTGCTTCCATACATTATTGTATCAAACACCACCTCAGGGGTATGTATTCCTTGCTAAATTGAGTAAAATGTACACAACAAATTTTGAGACTTGGATATTTGAATGCTGTC | |||||||||
gi|198017120|gb|FL756817.1|FL756817 CCGC7399.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat TTGACTAAGTTTATAGAAAAA EST sequence (targeted fragment marked with yellow): ACCCCTCCTAGCCCGCGTCGCCACGAGCTCGCCGCGCCGGCGAAGGAGGGGAGGGGCGACCTCGCCGGAGAAGAGGCCATGGGCCCGCCGCAGCCAGCCAGGGGCGGCCCTATCAACATCGAGGCGTGCGCGCGGCCGATCGCCGTCGACAACCGCATCAGCCTCCCCTACTACTTCCGCATCGCGGGCAGCCTCCTCCGACAGGCTAATATATATCGGAACGAGAAAAACATCCTCGACCTGTATGTAATCCTGCTGAGATACTCGAGTTTGTTGTGCGAGACGATACCGAAGCATCGCGATTTCCATGCCTTCAAGTTGAGAGAAAAGGCGTTTTTTGATAAACTTAGTGATGTTATCAAAGAGCTTGAGTCATTGAAGCCAGTTGTGCAGCGGCAGGTTGCCGAGCATAACAGAGGAGGTACTGTGGAATCTAATACTAATAGTCTAAATGGAACCTATGCTACAACTCATAGGATAGAGCAGCATACCCCAAGCTTGTATACTCCACAGACATTTGTACGTAGCGCTAATGGAGCACTGCAAAAGTCCTTCCAAATTGGGAGACAAGTGCCATCATTACCCAGTGTCCAAAAAGATAGGCAGATGCATAAACAATTTATGAACCTGCCTTATCCAAGTGAAGAAACACTAGCTAGACATTCCATATAGACCTAATGGTCTTCATGGCCGATGGAATGTGCCTATACAGGAATTAAGTTCAATATCCAAACAATTTTGAATTAACACAAGGTGATATGACAAGTTTAGTGCCATC | |||||||||