| mature miRNA: TCTCTCAGTTGTGAAGTCAAT species: Papaver somniferum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|189446835|gb|FG601836.1|FG601836 PF_T3_30R_A03_06AUG2003_031 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequ TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): GCAAGAACTTCCTGTCTCTTCATTAAATCGATAATGGTAATGGGAGGTTGGCTTCCTATGGCTCCTCCAGTATCTCGTCCTGACGAAGAAGTGGTAGCAGCCCTGGTAACAATTGGAGGCATCATGCTCGAAGAAATATTAGGAGTAGTGGCGGCTCTGGATCTGGTAATAGGAGGCATCACGCCAGAGGGGATGCTTCCGGTGCTAATGGTGTTGGTGCTAGAGGATATAACACCATGGGATGTGTTGACTGCGCTTGCGGACAGTACATTGGTGTTGTCCATTCCCCTTTATCGATACGACCACATACTCTGTCTGCATCGTCGTTGGTGGAGACACATACCTGAGACAAGGATTCCATATTTTTTATGTCATCTCTGAAATTGGTGAATGTTTGCTGACTCTTGCTACAACCGGTTTGCCATACCTTCCATGGTGATTGGAGTTCGAGCATTGGCGGCTTTGGGAGTGTTTGGGATTGGTGATTGAAATGAATTCTGGTTAATGATTGAATTTAGACCTAAGATCCACCATCTTGAGTTTGAGAAGATTGGAATCAAAATTGAGAAATTTGCTTCGCAACCGAGAGATTAATCTCCCACTGTGGTCGCCAGTTGTTTTGGGGTAAAAACTGATTCGGCTGTTTTTGGTAAATTTGGGTGTGTTGATGAGAAACGAATTCAAACCCTAAACAAATGCATTGCACAGGAGTACTTTTAGATTCGAGATATCAATCTGTAAGACTCTGGCCTAAAC | |||||||||
gi|189458432|gb|FG613737.1|FG613737 stem_S102_A02.SEQ Opium poppy stem cDNA library Papaver somniferum cDNA, mRNA sequence TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): CGGTGCCAGGAGATGTGTTGATCGTGCTGGTAGGCGGTACATTGGTGTCGCCGGAAGGAATGTGGACACCAGGGGTGTTGTCAGCACCAGTAACATCGGAATTTGTCGCTGATCCAGACCTAAGATCCACCATCTTGAATTCTTTGATAAAATTGAAATGAAATTGAAAATTGATCTTGCAACCGAGAGATTAATCTCCCACTGTGGTCGCCAGTTGTTTGAGGGTTAAAACTGATTCTGCTGTTTTTGGTAAATTTGGGTGTGTTCATGAGAAACGAATTCAAACCCTAAACAAATGCACTGCACGGGAGTACTTTAGATTCGAGAGATAAATATATAAGTCTCTGGCCTAAACCAAGAAATGGCCGTTCCATATTCAATTCGGTCACAAGGTAAAGGAGAAGGGTTGATCTTAGGGAGGGAAGCGAAGAAGGTGTTTGAGATCAGAGTGTTGAATTATGAAGGTATGGTTGTTTATGACTTGTGTATCAGAAAAATGGTTTTTGGCTACTTGTGTTGATAACACTTGTTGTCCTCCTTCGAAATAGGTTGAAAACCTATTTATGCAAGTCATTCGAGCGCAACCCTGATCTCGTAGGAAGTGGAGAAAGTTAAGTAGTGGAGTAGTGGGGTCGTGTAAGAAGTGATGATCACGTGGTCACATCTTCGTCCACTTCTCGAATCATTTTCAACCGTCCAGCGTTTCCTGACACATTCTCATAATGGGCGTATTGCACGCCGCACGCCGTAAACCGCCAGATCAATATCTCAGCAAGTATCCCCCAGTTTGTGACATGTTTAATGTCTCGAGTGAATAGGTCAGTCGTGGGACTTGATGCTAAAATCAGCACATAGTGCTTTAGCCAAATAATGGATCATTAGCAAAACCGATATTTATAGGGCATTGCTTAATATCATGTATGTAAATATCGCTTTTCGATAGCCACTGAAGATAATCGAGTGGTAGAGCATCGTTGTTTTGAGCTCGATCGAATCATTCACGGATTGAGCGTCTTAAAGCAGCACGACCGACCACTTCGGTATCGTTTGAAACCTATTGTCGAGCTGTCTCTGGCTGATCATTCCGTGAGGAAATGGCCGGGGATCCATGCACTTTATAGTTTTAAAAAATTCACCCTCCACAGGATGGGCAGTTGGAGGCGGGTACTTATCTGGCGGGGTGTAG | |||||||||
gi|189449020|gb|FG604828.1|FG604828 PF_T3_70R_F07_03SEP2003_053 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequ TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): CTATAATCAATGAAAACACCTAACCCTTGTTTTTAATTGGTTACCACCAAACTAGCTGACTTCGCAACTGAAAGAAACATGTTATCTGATATGCACTACCTACAGCCATCAAGGTGGTTGTATTAATTAACTTAGTTTGGTTATATTACTCAAAAATTTCAACGAATAAAGCTAAAAATGATTGTGGAACTTAATAAACCATTACATGATGAAGGTTCAACTCTGCACGGCAAAATAATGCAGTGGGGGATATCAGATAATATAATATTTCAAATTAACAACCAACCTTGAGGGGAATGTACCGCCATCATTTTGCAAAGCCATCAGGGAGGTTTCTTGATCAGATGGTATAATATTGACGACGGATATTCAGGGCTCCGATTTGAATTTTATCCACTAGTTAGAAATTTCTCTTTTACTAGCTTAGTTCGCTAGTCAGTTGTTATATTTTTCGCTATAAGTTGTAATCAGACAGTAGTCTGACGAACAAATAATAAGAATGGCAAAAATCTTATTTATTTTGTCTTGCCTGCATGAACATAGGAAACTCAAAACTTTGAATAAACAAGAAGTAAAAATAAGACGTGATGTCCAATGCTTGATCCCTAAGGAGAATCGAATCATCAATTTTACCAAATCTTTTATGATATCAACTCAGCAATGTTATCAATTACTGTAACGGAAGAGTAAGATATAGAATATTATCTAAAAGGGTCGTGCCAACATGAACAAGGAAATTAGTCGTAATCATGAATCATATATGGTTGCATTTTTTCTTCTTAGGATGCATATAACTTGTCA | |||||||||
gi|189449833|gb|FG605030.1|FG605030 PF_T3_72R_H01_04SEP2003_001 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequ TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): GACCTTCTTCTGCCATCATATCTTCTTCTGTAAATGTAACATTATTTACAGATGTTTCCGATGCGCTTAGGACCTCTGGACGTGAAGGAGCCAGGTGTACGTCCAGGGCTATCTGGTTAATTGCAGCAAATGTCTCCGTCGGCTGATTCTTCGAGAGGCGTAAAAGTTCACACAAACTTTCCACTAGAGATACCGCTTCCTGATCCACTGGTCTCTGGTTCGTAGTAAAGATGTTGATTTGAGAGGGACCAGTCCCCAGTGTGGAATCCTCTGGAACCCTCATCTCTGATGTGATCTTGACGAGGAAGTCAAGTATCCCATTTATCACTTCCTTGATCATCTCCATGTTCTTCGTGTGAATCTCTTGTACCCGCGCTAGTTCACTCAACGTTGGAAGTCTCCTGATTATACTGTCAGGTACGCCGTTGGGAGGAGGGGTATCTCCGTTGAAGGAATCACCAGGATTTGAGGTCGTTGAGGCGGTCTTAAGACCAACCATTTGAAACCGATCGAATGGTATTGAAGAAATTGAGTTTACAACCGAGAGATTAATCTCCCACTGTGGTCGCCAATTGTTTATGGGTGAAAACTATTTCTGTCGGTTTTGGTAATTTGGGGTGTGTGGATGAGAAATGAATCTAAACCCTAAACAAATGCACTGCACGGGAGTGCTTTTGATTCGAGAAATCAATCTGTGCAAGTCCGACCTA | |||||||||
gi|189451346|gb|FG606718.1|FG606718 stem_S013_C05.SEQ Opium poppy stem cDNA library Papaver somniferum cDNA, mRNA sequence TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): GGCTGCACGGTGACACCTGAGATATCAACACCGAGAGTGTTGTCAACGCTAGTCCCGTCAGGATTGGTCGTTGATCCAGACCTAAAATCCGCCATTTTCGAAATCAGTAAAATTGAATTGGTATTGAAGAAGTTGACTTCACAACCGAGAGATTAATATCCCACTGTGGTCGCCAATTTTTTATGGGTGAAAATTGTTTCTGTGGTTTTTGGTAAATGTGGGTGTGTGGATGAGAAACGAATCTAAACCCTAAACAAATGCACTGCACGGGAGTGCTTTTGATTCGAGAAATCAATTTGTATAACTCTGGCCTAAACCAAGAAATGGTCGTTCCAGACTTGCTTCGGTCACAAAGTGAAGGAGATGGGGTTGATCTTAGGGAGGGAAGCGAAGAAGGTGTTGAGATTGTGAAGGTGTTGGTTGTGTATGACTTGTATCAGAAAGCTGAACTGGCTTGCAGAATGTAAGCTATCAGTTCTGGTGTTTGGATACGGCTGTATCAACACTTGGTTTCTGTTGTCTTGTCTTGTCGAAATAGGGAGGAGAACCTATTTATACAAGTCATTGAGACTTATTCACGTATCTCGTGGGAAGTGAAGAAAGTGGAATGATGGAGTAGTGGAGTTGCGGGTGTTAGTGTTACACGATCAGTCTTGCCCACTTCTCCCATCATCACTAACCGTCCATGACTTCCTGACATGTTCTTGTGATGGCGCGTTGTGCGCTGCACGCTGTAAACCGCCAGACCAATACCCCAGTATGAATCCCCCAGTTTGTGACATGATTGATGT | |||||||||
gi|189452170|gb|FG609459.1|FG609459 stem_S048_F02.SEQ Opium poppy stem cDNA library Papaver somniferum cDNA, mRNA sequence TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): CTGTTCAATGTTGGGATTCTTTAGGTTACACCACCAAATATACCGTTGGGAAAAGCGGCATCTTCATTGGAGGAACTTCGACCGGGATCTGAAGTTGTTGGGGCAGTCCTAAGACCAACCATTTTGAAATCAGCCAAATGGGATTGGGTATTGAAGAAATTGACTTCACAACCGAGAGATTAATCTCCCACTTTGGTCGTCAATTGTTTATGGGTGAAAACTGTTTCTGCTGGTTTTGGTAAATTTGGGTATGTGTGGATCAGAAATGAATCTAAACCCTAAACAAATGCACTGCACGGGAGTACTTTAGATTCGAGAGATCAATCTGTACAATTCTGGATAAACCAAGAAATGGTCGTTCCAGACTTGCTTCGGTCACAAAGTGAAGGAGATGGGGTTGATCTTAGGGAGGGAAGCGAAGAAGGTGTTGAGATTATGAAGGTGTTGGTTGTTTATGACTTGTATCAGAATGTTGAACTGGCTTGCAGAATGTAAGCTATCAGTTCTGGGTATTTTTTGGATACTGATGACAACACTTGGTTTTTTCTGTGTCGTTTGGAAATAGGTGAAGGACCTATTTATACAAGTCATTGAGCGCAACCCTCATCTCGTAGGAAGTGGAGGAGGTGAAGTGATGGAGTAGTGGGGTCGTGTATGGATAGTGATTGTCACACGATCACATCTTTGCCTACTTCCCTCATCACTGTTAACCGTCCACCTTTTCCTGACACGTTCTCGTAATGGCGCGTTGCACGCTGTAAACTGCCAGACCAATACCCCAGTAAGTATCCCCCAGTTTGTGACATGTTTGATGTCTCGAATGAGCGGATCGAGTCGTGGGACCCACCGCGGGAAATAACATACGGTGCTATTAAGTTAAATAACTAAGTTATTTAAAGAATTGATATTCATGAATATCGCGTATGCTCGATGCACGTAATGCATCGAAAACAATCATATGCATGAAGCATCGTTGTTTTAAAGCTTACTGATTAGTCGCGGATTTAAGCGTCTTAAAATAGTAGCATGTCCACCATCTTCGAGTGATCGTTTGGAGCGCATGGCAGGCCCCATCTGGTCGATCACTCCCTGGGGTAAAGTGGGGACGTCGACACTGGGGCCCTTCATAGTCGCCTACTTATCTAGTCGTTTGCTCAGCTGCAAGTGACGAAGATGATTTACGGCCATTTTTGCGGCTGTAAAAAATTTAGGTTTAAAAGC | |||||||||
gi|189448987|gb|FG604613.1|FG604613 PF_T3_68R_C10_03SEP2003_076 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequ TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): AGTGTCTTAAGAAAAGTGAGTACCTCTTTCTGAGTTCTAGCCATGCCTGTCTGCGCCTTAGCGAGGATTTCTTGTCTCTCCATTAAATCTACCATTGTAATAGAGGGTTGTCCCCCTCTGGCTCCTCCGGCCCCTCGTCCTGAGGGAGGAGTGGTAGTCACCCTGGTAACAGATGGAGGCGTCATACTCGAGGAAATTTCGGGATTTACAGCTGCTCTGGCTCTGGTGATATGAGGCGTCACACCTAATGGAATATCTCCTCCTGCTCCGCTGGTGCCGGTGGTAAAGGAAGCAATTCCACGAGATACATTGATTGTACTGGCAGGCTGCACGGTAACACCACTAATCGGGATATCGACGCCAAGAATGTTATCGACGTTAGCTCCGTTGGGATTGGTTGCTGATCCAGACCTAAGATCCACCATTGTTGAAATCAGAAAAATTGAATAGGTATTGAAGAAATTGACTTCACAACCGAGAGATTAATCTCCCATTGTGGTCGCCAATTGTTTATGGGTGAAAATTATTTCTGCTGATTTTGACAATTTTGGGGTGTGTGTGGATGAGAAATGAATCTAAACCTAAACAAATGCACTGCACGGGAGTGCTTTCTGATTCGAGAGATCAATCTGTAAAATTCTGGCCTAAACCAAGAAATGGTCGTTCCAGACTTGCTTCGGTCACAAAGTGAAGAAGATGGGGTTGATCTTAGAGAGGGAAGCGAA | |||||||||
gi|189452396|gb|FG611309.1|FG611309 stem_S071_C01.SEQ Opium poppy stem cDNA library Papaver somniferum cDNA, mRNA sequence TCTCTCAGTTGTGAAGTCAAT EST sequence (targeted fragment marked with yellow): GTCAATTGATGTACTTCCATAAGTTAATATTCTCATTCCACTAACAAAACTGTCCAATCATTCAAGATTCCAAGGATAAATAAAATTTTCGAAATATTAACTTGTACAACAGGGGAACCTTTACCTACTCTTATACTGGGTGGTATCTTACTATCTTACCAACCGCGCTACTGTTTCCATAAATATTATTTGGAATCATACATACGATTGATCGATGTGATATTTGAACGGGCTTCTCCTTCGTAGGCAACCACCACTTGACTGATTCTCTGTACAAATCACAACCGTGTCATCAATGTTAGATCAACTCAAATGAATACAACAGAAATTATATATTTGCAACAGCTAAGAAGAAGAGGAGTAAGATTTGAACGTAAGCTCCAGACCTTAAGTTCGAAAGAAGAGTCAAATATGCTTTACTAAACCCTAATACTATAATCAATGAAAACACCCAACCTTTGTTTTTAATTGGTTACCACCAAACTAAGCTGACTTCACAACTGAAAGAAACATGTTATCTAATATGCATTACCTACAACCATCAAGGTGGTTGTATTAACTTAGTTTTATAATATCACACAAAAATTTCAACGAATAAAGCTAAAATGATTGTGGAACTTAATCAACTATTACATGATGAAGGTTCAACTCTGCACGGCAAATAATGCAGTGGGGGATAGCAGATATTGTAATATTTCAAATTAACAACCTTGAGGGGAATGTATCGCCAACATTTTGCATAGCCATCAGGGAGGTTTCTTGATCAGATGATATAATATTGAGGACGGTTTTTCAGGGTTTGGTATTGTATTTTGTCAACCAGTTAGAAATGTCTCCTTTACTAGCTTTGTTCAAATGGAAACACCAAGTTGTTGTATTTTTCCCTGTAAGTTGTAATCAGACATTAGTCTGACAAGCAAAGAAAAGGATAAAGCTTATTTATTTTTATCGTGCCTGGATGAACATAAGAAACTCAAACTTGACGACAGATGTTAGGAATATATAGACGTGATGTCCATGCTTGACTCTAAGGAGCATCGACTCATCAATTTACGATCTTTTATGATTCACTTGGAGCATTTATGTATGGAAGAATAGAATGGATTTCATTTAATGAAGCCATTCAAGGTCGGGCCAACTGAGAGGAATCAGTCGTATCTTCATTAAGAAAAAGGTGGTCCCCACTAAATTCTTTTACCAAAAAGTTA | |||||||||