| mature miRNA: TTCCACGGCTTTCTTGAACTG species: Parthenium argentatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|294708936|gb|GW782909.1|GW782909 PBC051F05_07337 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg TTCCACGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAAACTGTCTGTTTCATAAACCCTAATTAGGGTTTCCATGAAAAAGATTTGTAGATCTGAAAAACATCCATAATAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGTTTTGATCTGTCAGATCTGTGTTTTTTTATATAATCTTTGCGGTTCAATAAAGCTGTGGGAAGATAGAGACAGTATCAAAACCAGTAGATGCAAAAAAGTTGCAGTATTTCTTTATTTTGATTTGGTTTTCTTGATCTTTAGTTTCTTATTCTTTTTTTTTTTTTTAGAACGGCTAACAAATAAATCTCGAGCACTCTCGGAGTACCCACTGACAAAGGAGTACTCCGAGAGTAACCCGAGTCTACCAGTAATTTCACGCCAGTTCCCGGGGAAAACCCGCCGCCCGAAGGCCCACTACGGTAAAACTCGGCCCACCAGCAGCATTTTGCTGCCGGCAGGACTCGAACTCCTCACCTCCATAAGGGAAGCAAGGAGGGTACCACTCCACCATAAGGGGATTGGTTTTAGTTTCTTATTCTGATTTAGTTTCTTGGTTAAAGGTTTTGGTTTTGATTTATTATTATGTGAGTTCTATGTGTTTCGTCAAAGAACCAGGGATGTTCGTCGGTTCGGTTTATACAAATTTTATGTAACTGAA | |||||||||
gi|294680282|gb|GW786068.1|GW786068 PBC087A08_10496 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg TTCCACGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTCTCCTAAAAAAAAAAAAAAATGAAGCTTGTTTCCATGGCTACACTATTTTTCTTCGCCCTCTTCACCCTCTCCTCAGCCGTCGATATGTCCATCATCGGTTACGACACTATTCACATGACCACCTCTAACACCAACTGGCGCACTGACGACGAAGTCAACGCTCTCTACGAAACATGGCTTGTGAAACACGGCAAAACATACAACGCTATTGGAGAGAAGGAAAAAAGGTTTCAGATCTTTAAAGATAATCTTAAATTTATCGATGAACATAACTCTGGTGACCACTCCTATAAGCTTGGATTGAACAAGTTTGCTGATCTGACTAACGAAGAGTACCGTGCAACTTATACTGGTGTTAAGATGATCGATGGTAAGAAGAAGTTGTCAACGGGTAAGAGTGATCGGTATGCTTTTCGGTCGGGTGAGTCGTTGCCGGATTCGGTTGATTGGAGAGATTCAGGTGCGGTAACTGAAGTTAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCATTTTCTGCAACTGGATCTGTGGAAGGAATCAACAAGATCGTGACAGGTGATCTGATTTCAGTTTCCGAACAGGAGCTTGTTGATTGCGATACGTCCTTCAATGAAGGATGCAATGGAGGCCTTATGGATTATGCTTTTGACTTC | |||||||||