| mature miRNA: TTGACAGAAGAGAGAGAGCAC species: Persea americana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|51362098|gb|CV002875.1|CV002875 pam01-18ms3-b02 Pam01 Persea americana cDNA clone pam01-18ms3-b02 5', mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGAAGAGAGAGGAGACAAGAACTAGTTTCGAGTTTTTTTTTTTTTTTTTGAAAAAAAATGCTCTTTCTGAAAATCTACATCAATAGTTTTACATGACATCTCAATGGTACACTCACCAACCTCAATATGAATATTTTACGATAATTTACATTTTTATCTCAATGATTACCTACTTCTCACTAGAAGCGACGGTGTGATACTCAAAGACTTGTTGGGAGCATGAGTTATAACTTCTTACTACAGTGAAAATCAGCTGCTGTCTGAAAATTTGAGCAGGAAATGCAATCCAATATATTAAGTAATCAAGCTTCATCTTTGTCAATTGCTTCTTCTCTTCTGTCAAGACTGCACTCAATAGACCCCCTGTCACCACTGCTGTAAGCCTCAAGTGATTCCTTTTTAAGATTTCCAAAGGATCTTAGCTCGTCTTTCGTTGCACTGCCACCATTATGAGAGAGTCCACCATTTGTTGCCTTATGTATAACGGTCTCCGCCTTATCTTCTTTCAAATCCCGTGTAGATTGAGTACCATCTGCTACAGTGGCTCCTGCATCGCTGGAATTATTGGTGATAATTACAGACTTTTCACTGGAATTA | |||||||||
gi|165962870|gb|FD506233.1|FD506233 Pam01b_73_D02_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lf7 TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTGGGAGCTGCAGGGTCCATCGAAGAGGACCCGTGGTCCTAGTAATGGTGCCAATTCTGCTATGTGTTCTGTCGATGGATGCAAATCAGATCTCAGTAACTCCAAGGATTATCACAGGCGTCACAAGGTCTGTGAGGTTCATGCAAAGACTCCAAAGGTGTTGGTGGCTGGTCAAGAGCAGAGGTTCTGCCAGCAGTGTAGTAGATTTCATTCGTTGGGGGAGTTTGATGAGGTGAAGAGAAGCTGCCGCAAACGTCTTGATGGTCACAACAGGCGCAGAAGGAAGCCTCAGCCAGAGTCGCTGTCCATGAACTCAGGGAGCTTGTTGTCTAATCGCCAAGGCAACCGGTTCTCTTCTATTACTCCACAGATGTTAAGTGCTGTGTCAGATCCCAACTGGGGTGGGTTCATCAAAGCAGAGGAAGATGTGCTTTTTGGACACCATCCATCTGCCTTCCCTGAAAAACAGCATGTGTTTACTGTTTCCTACTCCCGACCCTACAAAGGAGGGAAGCAATTCCCCTTCTTACAAGCCAATGATAGCACACTAAGAAACCCGACAATGCCTGAAACTTCTAGTTTCCTGCCACTCCTTACTACCATTGCATCTTCGGAAAGTGGCCATAAGATGTTTGCTGATGGGATGACCCGGGCCCTGAACTCCGAATGTGCTCTCTCTCTTCTGTCATCGCCAGCTTCGACTCTGGGCATCGGTGTAAGCCACAT | |||||||||
gi|165966098|gb|FD507398.1|FD507398 Pam01b_91_B01_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lfn TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AAGGAAACCACCTCTTGGATCTTTAACTTCACGTTATGGAAGGCTGCCGTCTTCTTTCAACGAAGACAGCAGCAGAGCTGGAAGTTTCCTGGACTTTGCTTACCCAAGATCAACAGGGAGAGAAGTATGGCCAACTGTGAGGGTTGGTGAGCGGGAATCAGGCAATCAATCTACTGCATCATCTGGAAAGCATCTTCCACATCTTTGGCAGGGTAGCATAGAGGCTTCTTCTGCCAATGTCTTTACACATGGAACCCATCAATATCTGCAGGGTTCGGCAGGCGGGACTCCCTTTCCCCCTTCAGAAACTCCCTCAAGCGAATGCTTTGCAGGAGTCTCCAACACTGGTTGTGCTCTCTCTCTTCTGTCATCGCAGCCATGGCCCCCCAGGAATCGAGCTTCGGGTATCACAGCCAATAACTTCATGGATGAGAAGGTGGCTCCAATGGATCAATCAAGTCATGGTGCCATTGCAAATAATCTAATGAGCAATTCATGGAGTTTCAAGAGCCAAGAAGCCAGCAGCAGCTCACATATTATCCCACATCAGTTGGGACAGGTACAGGTTCCGGAGTCTGTCACTAGTCAGTTCTCAGGTGAGCTTGATCCTCCTCGCCAAGAGAGCAAGCAATTTATGGACCTCAGGCAGTCCAGGGGCTATGGCTCCTCCAGCAATCAAATGCACTGGTCTCTTTGACTCTGCTCT | |||||||||
gi|42642222|gb|CK751799.1|CK751799 pam01-1ms2-f08 Pam01 Persea americana cDNA clone pam01-1ms2-f08 5', mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCAATTTCGAGCTTGCTCAAGCAAAAGGGTCTTGTCTAAGGTCTACGAGAGGAGAAGGCATTGATGGGCATCTGCATCTGCCTGGTGTAGAGCTTCCAAGCACCATCTCTACTCTTCGTTGTCATGACTTTGACAAGCTCTTGTCATTCAAGGGCGCCACTGCCGAGGGTCCTCAATCAAGGTCTAGAAGCCATCCATGATCACTTCTAACCTGGATGCAACACCGGACATTCGGCGTGCTCTCTCTCTTCTGTCAACTAGTAGTTGGGGCTCTCCTGATCAGGAACCTGCTTTCAACCATATCATGCATGCGAACCACACAAGTGCAGTCCAGCCGATGATGCACATGGTGCATCAAGGCTTGCCGCATGCTAGCTCAGAACTTTTGCAGGCTGAACACCCATCAGCTGAAAGCCCAGGTCCATCCACCTTCAATAACAGTAGCGGGCAGTTCCAAGAGTTTCAGCTGTTTAAAGAGCCACTGGAGTCTGCATTCTTTTACAACAATCATATGGATTGATTGCTGATATGGAGTGGCTTAAATCAGGCTAGAAACAGGGCTGCATTAACGAATTTCTCCCACTATGGTCGACTGCCAACTTCTACTGCGAATTCGGTGAAATGGGATGCACCA | |||||||||
gi|165959899|gb|FD503730.1|FD503730 Pam01b_33_E01_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lss TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGGGGCCGGAGAATTTGGTTCTTTCAATACATCATCGACCGTTGAAGGCGTACCCAGGGTCTCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCAGCTCAATCACAGAACTCATCCACTCCTCTTTCAGCAATTCCCATGGCCCGGCCTCTGATCGTCCAAGGTAGACAGACTCATTACAGTGTGGGATTTCCCGACAAGCTCCTGGTGGTAAGCTCCCAACCTGCAACAAGTGTGGCATCAAACCGGTTTTCTTCACCTGGGATGGAAGATGATCACATGGGAGCTGTGCTGGTTTCAGATGACAGCAATGTTGTTACCTTTGATGCCCAAGCAGAAAGTGATTTTCACCGCTCTAGGTTTCTGAATACAAAGGATTCTGTTCTCTGTCGTGAACATGATCATACTATAGATTTACTTCCGTTGTCATCACAGCTTCAAAGTGGAGAACTTCAGAGACATTCGACTCAAGTAAAGCAGGAAAGCGGGACCTTCTGCTACCTTCCTATTACTTAGGCTCCACAAAGTAGCATTTCTGTGGTATATTTCCATCTTTATAACAATTCTACCGTGGTAGCTGATATTGATTGACTGCTTCAGTATCTTCCTCACCTGCAAACCATTTCTTGCTCGTTGCACTATTAAATCTATGTCGTCAATTTCATTTCATTTTGGTAGAGATGGCAGAAATTCTGTTAAACTCTTAAGTTGAAATTTGCTTCATTTTGCATCAAAAAAAAAAAAAAAAA | |||||||||
gi|165963088|gb|FD503697.1|FD503697 Pam01b_32_H09_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lsv TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTCACAACAGGCGCAGAAGGAAGCCTCAGCCAGAGTCGCTGTCCATGAACTCAGGGAGCTTGTTGTCTAATCGCCAAGGCAACCGGTTCTCTTCTATTACTCCACAGATGTTAAGTGCTGTGTCAGATCCCAACTGGGGTGGGTTCATCAAAGCAGAGGAAGATGTGCTTTTTGGACACCATCCATCTGCCTTCCCTGAAAAACAGCATGTGTTTACTGTTTCCTACTCCCGACCCTACAAAGGAGGGAAGCAATTCCCCTTCTTACAAGCCAATGATAGCACACTAAGAAACCCGACAATGCCTGAAACTTCTAGTTTCCTGCCACTCCTTACTACCATTGCATCTTCGGAAAGTGGCCATAAGATGTTTGCTGATGGGATGACCCGGGCCCTGGACTCCGAATGTGCTCTCTCTCTTCTGTCATCGCCAGCTTCGACTCTTGGCATCGGTGTAAGCCACATGGTGCAGCAGACTGACCGGATCCCTATGGCGCAGCCTCTGGTTCAGGGGCTCCATTATGATAGTGTCGGCCGGTACTGCTCGCAAGCTTCAAACAATGTTTCAACAACTGGGTTTTCTTGTTCGGGAGTGGAGGATGAACAGCTGGGTACAGTTTTGGTGTCTAATGCCTCAGATGCGGGTTTCAATTGTCACGATATTCTTCAT | |||||||||
gi|74063226|gb|DT578448.1|DT578448 pam01-27ms1-a02 Pam01 Persea americana cDNA clone pam01-27ms1-a02 5', mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCGGGACTCCCTTTCCCCCTTCAGAAACTCCCTCGAGCGAATGCTTTGCAGGAGTCTCCAACACTGGTTGTGCTCTCTCTCTTCTGTCATCGCAGCCATGGCCCCCCAGGGGAATCGAGCTTCCGGGTATCACANGCCAATAACTTCATGNGATGAGAAGGTGGCTCCAATGGATCAATCAAGTCATGGTGCCATTGCAAATAATCTAATGAGCAATTCATGGAGTTTCAAGAGCCAAGAAGCCAGCAGCAGCTCACATATTATCCCACATCAGT | |||||||||
gi|165961152|gb|FD502922.1|FD502922 Pam01b_19_D01_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lpj TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATCTGCCGTAAGGCTAAAATATATTTTGTTGAGTTCTCCCTCTTTTGTTAAACAAAGACCCAAAATATGTGGTGAATATATTAATCATGATATTTTCAAAATATTGGCTTACTTGTGACTGTGGTGTTGTAGAATTGTCCAAAAATGCATGGCTGGTATTTAACCTGCATTTCTGAAATGTAGCTGTACTTCAAAGAATGAAATACTTTACAATTTCTACGAACACAACAAATTTTTTGTTTTGAAACTTTCCATACTTAAGTTAAGAAACTTATAATTTTATTTTTTCATTTTCTAAGAGCTAATTCTTGTGCAAAGTTAAAACACTGAAATTACTAAAAATTTTCTTCATATTTTTTGTAAGACTGCGCATCTTGGTGTTTCCATGTTGTTCAATACAAAAGAATAGTTTCAGGGTTGGATGCTAAATGGGTTACCTCCATTGAATTTGACAAGCCATCCAATCAAGAGAGTGGAAAAGTTGAACAATGAATATAATTGCTTTCTTTAATTGGACTACAAACATTCGATGAGGTGGACTTCACGCGGTTAGATGTTTTAGTCTCACGAGGATTCCATGTTTCAACCATTTGCAGCAACTCTTCTATAATTATCAGAGTTTTTCTTAGCCATCCCTAACACCCCACTTGCCAAAACAAAAATACATTAATTGCATTC | |||||||||
gi|165965100|gb|FD508668.1|FD508668 Pam01b_111_G09_C013.g1 Persea americana flower bud library Persea americana cDNA clone 122Lf TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTAATGAGTATCCTTCAATTCCTGCAAGCTCCCCATCTGTCTCTGGTCCTTCAGGAACTTCTTCCAATTCTCCAAATCAGGACAATGTTTCATCTGAGAAAGAAAAACTCACAGATGAGGGTGAGGCTGATTCTTCTGCTAGGGCACCAAATAATGATGCTTCTGTGCCATCTGTTCTCAATATGAAGATCGAGCCAGAGAAACCGGTTGTCCAGCAAGAGATAGTGGACTTGTACATGAAAAGCATGCAGCAATTTACGGAATCATTGGCAAAGATGAAGCTTCCGATGGATCTCGAGAACGGTAGTCCCAACGAGGAAACTGGCAGTTCAACTACAACCTCTGATCAGAAGCTACAAGCAGCAAAGGGCAATGGTTCCAGAGTGTTTTACGGAAGTAGAGCATTCTTCTGATCTTCTGAACTTCTGACTGCTTTCGAGGATATGCAGGTGACACTAGAAGTAGCACTGATNGGTAGTTGTTGCTTTAATAATAATAGGTGTTTGGCTTGTGTTGAATAGTTTAGGAGGAAGAAGACTATCTGTGTGTATTGAGTATTGACAGGCTTTTGTGCCATTAGAACTGCAATATCTCTGTGTTTTAGTCTTTTATCTTCTTCTGATTTCTTTTAAAAATGTTCTCTCTTCTTCTGTCAAAAAAAAAAAAAAAAA | |||||||||
gi|42644634|gb|CK754211.1|CK754211 pam01-7ms4-d01 Pam01 Persea americana cDNA clone pam01-7ms4-d01 5', mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CCAACACTGGTTGTGCTCTCTCTCTTCTGTCATCGCAGCCATGGCCCCCCAGGAATCGAGCTTCGGGTATCACAGCCAATAACTTCATGGATGAGAAGGTGGCTCCAATGGATCAATCAAGTCATGGTGCCATTGCAAATAATCTAATGAGCAATTCATGGAGTTTCAAGAGCCAAGAAGCCAGCAGCAGCTCACATATTATCCCACATCAGTTGGGACAGGTACAGGTTCCGGAGTCTGTCACTAGTCAGTTCTCAGGTGAGCTTGATCCTCCTCGCCAAGAGAGCAAGCAATTTATGGACCTCAGGCAGTCCAGGGGCTATGGCTCCTCCAGCAATCAAATGCACTGGTCTCTTTGAACTCTGCTCTAGAGTTCGGGAGGTGTGTGCTGTCCACATAGCTGTCTTCTCCATTTCTGCATGGATATCTTTTCCATTTTAATTTTCTTTCTAGTGACGGATAACAGTATCTTCCTACTTCTCCTTTGTGGGTATTTATGATGGGGACCCAGTATGAATCTCAAGGCTCTTCA | |||||||||